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LotjaGi1g1v0186200.1

Overview

Field Value
Gene ID LotjaGi1g1v0186200
Transcript ID LotjaGi1g1v0186200.1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT5G62610.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LV17|BH079_ARATH Transcription factor bHLH79; TrEMBL-Plants: tr|I3SI98|I3SI98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0186200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:36420109..36426079) extracted from Lotus japonicus Gifu genome v1.2.

ACGGGAATTGAGTTTGGTGCCCCACCCCTTAGGCTTTGCACCCCACTTTATTAAATACGGAATTTAAAGTTCCGTATCAA TACGGAAAATAGAATTCCGTATCTGTTTTAGTATATAATGAGTGGTTGAAAATGTGACACGCATGCTTAAATACAGTGCG GAATTTTAAGTTCCGTATTCAATAGGGAGAATACAGAATTTTAAATTCCGTATTTGATAAAGTGGGGTGCCAAGCCCCAT AGGTGGGGTGCCAAACCAACTCCCCTCATTCACTCTCTCTCTTCCTTTAATGTCATGTCAACCAATCTCATCCATTTTGC TGCTAATTATTAAACCCAACCTCACTCTCTAGTCACTTCTTTCCCTTCACTACTTCTTCTACTGAGTTCTGAAGCACAAC CAAAACGGTGACGTTTTCGAATGATCCCAAATGGACCCTCCTCTCATCAACGACTCCACATTCTCCTCCGCTTTCGCTCT CGCCGAGATTTGGCCCCGACCAGGCGGAGGAGATGAAAATTCCACCGTCACCCAACTCACCGCCGCCCGAAATCACGGCA ACGGCAAGAAGAACAACAACAACCACTCCACCACCTCCGAGGACGATTGCTCCAAGGTACTCACTCACTTCTCTCCACCA CTCAAAATCTCTTGGTCTCTTCAATTTCACACTCCAATTTGCACTTTCCTCCACAATGTTTGGAAAATTTGCATACCTAA CTAATCTTCACTTTTAATTGCATTTTTTTTTTGTAACTGTTATAATTTAAGAATAAAATTATAGTTAGTCTCTTTATTGT TTTGTGAAATTGTGAAGTGGATAAAATTTTGATGGGGTGGGTGAAATTTTGAACAGAATGATTCTGGCTTGCATACCTAA TTAATCTTCACATTCAATTGCATTTTTTTTTTGTGACTGTTATAATTTAAGATTAGAATTAAAGTTAGTCTCTTTATTGG TTAGTGAATTTGTTAAGTGGATAAAATTTTGATGGGGTGGGTGAAATTTTGAACAGAATGATTCAGGCAATAAAAGGATA AGATTAGGAGGAGGAGGATCTACTGTTGAGAATGGTGGAGGTTTGAAAGCTGCAGAAGCTAGTTCAGTGGCTGGAAGCAA CAACTCTGATGAACAAAGCACTAAACCTTCAGAATCAGAGCCACCTAAGCAAGACTATATTCATGTTAGAGCAAGAAGGG GGCAAGCTACTGATAGCCACAGCATAGCAGAGAGAGTAATTCACTTCTCCCTATGTCTTTCTATTTCCTATCTCTTGTTA GTTGTAAGCTTTGCTTGAGTTGGATGCTTTCTTGATCCAGAAACCAATGAATGAAAGTGTTGGATTTTTTAGACATTTCT ATTTCAGTTAACTATTTAATTTGGGGGATTTTGAATCTAACAACACCTGTTTTGGCAGGCTAGAAGGGAAAAGATCAGTG AGAGGATGAAAATTCTTCAGGATTTGGTCCCCGGGTGTAACAAGGTGAACTTACTATTCTGTTTTTTCAGTGAAACAATG GCTTTAGTGTTTTCCTTTGTCAATTCCTTTTTTTCCTTTCTGTTCAGATGATTGGTAAAGCACTTGTTCTGGATGAGATA ATTAATTACATCCAGTCGCTACAGCATCAGGTTGAGGTGAATATCTTCATCTTTCTCTTTCTATCGTGTATTCCTACTCG ATGATGTTTTTCTTTTTAAACCAATGAATCTAATGTAGTGGAAAATAAATTGAGTTTTGCAGTTCCTATCGATGAAGCTT GAAGCAGTTAATTCAAGAGCCAACATGAACCCAACAAATGAAGGGTTTCCTTCAAAAGATGTAAGTCTATCAACTTTTAA GTTAATAATATTTATTTCTAATATTAAATCCATTTCCATTTATGTTACTTAAAATTTAACTTTCATGTGAAATTGTATAT GCTGGTTACGGACAATTTTTAACTACTACAGAAGAAAGTTACACTTACCTGAATCCTACGTCTCAAAAATTGTTAACTAA AATGATTCATGAATTGTTTTATTGTAAACAATTCTTCTTGACTTCTTTTAGCTGAAAGAACTAATAGAATAAAGTGAGTT GTAATGTAAGTATATGGGTCCATTTGTGACATCGTTCTCACTGGTCAGTTGACAAAGCTCAATAGAAGTCAATGTGGTAT GAAGCAAGTAGGGAGGAAGTGGAGATTCAGTGTGGAACATGGAAAGGAATAGATCAGAAGGAGAAACAGAACAGTGATGT TCAATTCATTCTCAAATTAAAGTCTTAGCATTCAGAAGTTGGTCCACAACAATCCTGAAATAATGTCCACCAGCTCCATT ACCAAGCAATCTAATGGCCTAGTAGTAGGTATCATCTCTTCCTTACAATAACTGAAGGCTTATCAGTCGTAGGGGACGAT TGAAATAACACTCAATATCCCTGGTTGTCTCTGATGTGATCATGTGACATCCATTCAGATGGAATAACATTCTCAATCAT CTGATATTCGGATCAAGACCACTTCAAAATTCCCAAATTAGCTCAGTTACAAATTGAACATATTTGGAGGGGATGTATCA TGTAACCACAATTTCCATGAGATATAGAGTTCAATCCAACTTTTCATTGTGATCATATGAATCATAGGAATAATAACAAT GGCAGTGTGAGTTGGCGTGACATCTTTGATTGGGAAGTCAGAGGGTTGTCGTGCGTTTCGGGTCTCGCCTGATGAGGAGT TGATGTTCACTGCTTGAGGGAGGGTCTATGATCTGGGTTCTAGATTTCCAGATGAAGTTCTTTTTCCAGGGATTACACCT CCTGGTGTGTGGCTTGACGTCGAAGAGGCTAAGGACGGAGGAATGTTAGGGGATGTTATTTTACCTTTATTCAATAAATT TTGGGATTTCTGGAAATAGTTCATTGGCATTTAATGTAAAAGCTTTTTGGTCTTCTGGGGAGATGGTTGTTGCGGTTACA AAACTCAATCAGGCTTTTGAGCTGTGCTCCATTATTGCTGGTTTGTTTGAGCTCTTTGGTGTTTTTGAGGGCGCTCAGCT GTGTTTTTTCAGCTCCTTGGATCTTCCTTCGCGTATCCTATGGAGATCCTTCTCCATTCCCCTTTTATCCCTGTATCATC TGTTTTGGAGCTCCCTGTATAGGTGAAGCTACTGGTCCTTTGTCCCCTTCTTGGTGGAATGCTGGTCTTTGATTTCAAGC AGCTAGCATGGAGCGGTGGTTGGATCAGTTTCAGCGTACCCGATGTACATGGATGAGGCTTTTAGGGTGGGGTCTATCCC CTCTGAGGACCTTAGGTCGTCCCAAGAAGAAGGGTCATGTCATGCACAAAGAAGGTTCTTTGAGGCCTCGTGGGCTATCA AAGAAGCAAAAGAGGAGGTGGCCTTCCCGGTCTGAGGTGGTCTCCTCTGCTGGTGCTGAGCTTCTGTTTGTGCCGGAGGA GGGGGAACAGTCTGTTTGACGTTTCTACTCCTTTAGAGGTGTCAGCTCCTACGCCCTCAGGTGCGTGTTCTTCTGGCGGG TATTTTACCAGAGCTAAGAAGTCGCGGTTACTCGGAAAAGTCTTGGGTCTTGAATACGACGGGAGTGACTTAGAAGCTAT TCGTGGGTTGGAGGAAGAACTTAGAGAGATGTTCTCTCCTTAGCCATGGTGGTTTTGATCATGGTGTTTGTTACCTAGCT TTTTGGAGTTCTTTTTTGTGCAGCTTTTGTAGGTCGGTTTTTTGGGTCTTGTCGTTGGGCTTTTGGTGGGCTTTTTTTTG CTCTTTGGAGGTTTTGTGTCCCTCTTTTTGGTTGGCTTTTCCTCCCTTTCTTTTCTCTTGAGAAGGGTGTTCTCAAATTT TTTCTGATGATCTATGATTTCAAAAAAAAGGGACCTAGAAATGTTTGGCCTTATAATGGTAGGACTCGTAGCTTGATTTC AAATTCATGTTCCCATAATAGTTTGTAATTTATTGAAGCTTTATCCCCACACCATTCACTTTGACCATCACTTTAATGTT GATAGGTCATTAGATAGATACAAACACTTAAGAAATCCAAAATTGCAAGAAGCCATCAAATCAATGTTCATAACATTGAA CAGCCTCACACAAGCTTGAAGAAGTAAAAGTAATCTTGCACTTTAGTTACAGAGGACCAAAAACCTGGGAGATGGTACCC TAGACCAGTGACGGATCCAGGAATTTTGTGTCGTGCGGGCAAATACACATACAAATTTCAAGCTGTAAAATTACAGTATA TTACTCCCTCCGTCTCATATTATGAGTCTAAGTCACTCACTAATATCTAGAAGCTCTGAGAAATAAAATAAAAATATCAA AATAATAGAACCTAATTGTGCAGTTTCACGATTTACAAGCATTAAATGAAAATCACAGTCTCACACTCACTTGTATAGGT TTTTCTCCAACTTGGACAGTAGACATTCATCTTATAAAATGGAAAAAGAAAGCAAAAGTTGATCTATCAGTGACATTTAA AATAAAATTATCCAACTATGGGGGCAACTATTAAGTGTGTGGGGGCAATATAATATTTTATATTATAATATATATAGATA GTATGAAGTAAAATGCAAAATAAGGTGGGGGCAAATGACCCCATTCCCTCCAACCTGGGTCCGTCCCTGCCCTAGACTGC TTGAAGGTGTGCTTACTTCCTTATTTTCACCAAGCTGTTGTGATCGGTGAGGTGTGCCCTTGAGATTGCCTAGGAAGAAA CTTAGTTTACATGAAAGATAGCCCGATGGTGATTTTATCATATAACCGATTTCATCCTCCTTAAGCCCTGTCTTTATTAG ATTTGCAAATCATCCGGTTTTTTTCGAGTCTATGGACATGTTTGAGTCTTAAAAATTGGCTCGATCAAGAATTAGCTGAG GGACAAGCGAAACCCGTACCAATTCCCCACATAAAGCCCCCTAAATGAATTGTAGTTACACTAGGAGCATCAGTCTCGTT ATATCATGGTTTTAATCAATTGATATATTGTTTCAGGTTGTTACCCAGCCATTTGACATTGCTGGAGTGATATATGAATC ACACGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATTGGTGGGGGTTTTGAAGGAGCAA CATAATACTTGGCTTGGAAGTCTCATTGGAAATGAGTGATCGATCATTCAGTGGGATTGATTACATTATTTTCTTTATTA ACAACCTAGTCAATTATTGCAGATTGTAGGTTTGTATGTCCTTTGTTATAGTATAATATCATTTATTTATAGGAAGTGCA TCTGATCGCATGCGCTTCATTATATTAGCAAGTAGCAACTAGAAAAGAAAATCTGGTTTTCATTTTTAAACTCTTGTGCA ATAGGATTCATCTCCCCTGATTTGTTTTGTATAACAATGTGTAGCAGGTGTGTATTTGTGTTTAAGACTTGAGACATTTT CAAATTTTATTAACAGAAACAGATGGAGAGAACTAGTATTTTGAAGGACACTTGCATCTTATGCAGTGCTTGTTGATAGT AACCACAAACCCATTTTTACAGTGACTGTTCACATTTTTATTAATTACATATATGCTTTCCTATACAGGAATTTTATGCA GAGCCATGCTTCTGATACTTGACTCAATGTGGCATCATGAGTTTGAGTAATTAAAAATTTGGGAGCACAATGAATTTTAG TGTTAGATTAGTCAAAGCATGATAAAAGATAATGATGATGGCGGACATAGTCAAAACCTGATAATGATGGTGATGACTGA TGATGATAGTAATAATTTCTATAATAATGAATTTTTCAGTAACTCAAATTTGGTGGAGGTTATTGTTATTTGTTAATACC TGGCTATGACAACACCTGATTTTGTTGTTACCCTTTGATGTTTCATTATGGTCACTACTCTTCACTAATACTAATACTAA ATGAATAGTTTTCAGCCAATGTTTCCAAACGTGGATAAGAGAGCAGTTAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0186200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACCCTCCTCTCATCAACGACTCCACATTCTCCTCCGCTTTCGCTCTCGCCGAGATTTGGCCCCGACCAGGCGGAGG AGATGAAAATTCCACCGTCACCCAACTCACCGCCGCCCGAAATCACGGCAACGGCAAGAAGAACAACAACAACCACTCCA CCACCTCCGAGGACGATTGCTCCAAGAATGATTCAGGCAATAAAAGGATAAGATTAGGAGGAGGAGGATCTACTGTTGAG AATGGTGGAGGTTTGAAAGCTGCAGAAGCTAGTTCAGTGGCTGGAAGCAACAACTCTGATGAACAAAGCACTAAACCTTC AGAATCAGAGCCACCTAAGCAAGACTATATTCATGTTAGAGCAAGAAGGGGGCAAGCTACTGATAGCCACAGCATAGCAG AGAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCCGGGTGTAACAAGATGATTGGT AAAGCACTTGTTCTGGATGAGATAATTAATTACATCCAGTCGCTACAGCATCAGGTTGAGTTCCTATCGATGAAGCTTGA AGCAGTTAATTCAAGAGCCAACATGAACCCAACAAATGAAGGGTTTCCTTCAAAAGATGTTGTTACCCAGCCATTTGACA TTGCTGGAGTGATATATGAATCACACGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATT GGTGGGGGTTTTGAAGGAGCAACATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0186200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDPPLINDSTFSSAFALAEIWPRPGGGDENSTVTQLTAARNHGNGKKNNNNHSTTSEDDCSKNDSGNKRIRLGGGGSTVE NGGGLKAAEASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIG KALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANMNPTNEGFPSKDVVTQPFDIAGVIYESHAARGYAQGSHPGWLHMQI GGGFEGAT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12565:SF324
1 248 248 3.5E-104 –
PANTHER
PTHR12565
1 248 248 3.5E-104
IPR024097
MobiDBLite
mobidb-lite
20 113 94 - –
MobiDBLite
mobidb-lite
28 56 29 - –
MobiDBLite
mobidb-lite
91 105 15 - –
Gene3D
G3DSA:4.10.280.10
122 197 76 1.2E-15
IPR036638
CDD
cd00083
123 180 58 5.12607E-11
IPR011598
SUPERFAMILY
SSF47459
123 194 72 1.02E-17
IPR036638
ProSiteProfiles
PS50888
125 175 51 15.758
IPR011598
Pfam
PF00010
129 176 48 6.0E-9
IPR011598
SMART
SM00353
131 181 51 5.9E-10
IPR011598
Coils
Coil
172 192 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0186200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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