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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0189500 |
| Transcript ID | LotjaGi1g1v0189500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G18975.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975, chloroplastic; TrEMBL-Plants: tr|I1MEY8|I1MEY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0189500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37197701..37203852) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTTGTTGATTCCTCATTCACATAAGCTGAGACACGTTAAAAATTCCCCCGTCCACATGTATACGGATTGCTTGATCC ATCAAGCTGAGACACATTAAAATTGATTCTCCAATTTATATAGCCAAACAACAATTTCCCAAAACTTGTGAATTTGAATA AGGAACGCAAGACCCAGTAGTAGAAACAGGTACCCATCACTTGAAACTTGAAAGAGAGCCTAGAAGTAGAAGTATGATAA TCGATTCAGATTCTACATCTCCATGAACTAATAAGCCACCCCACTAAAACCCTAGCTGATGCCCCTAAACCCCAAATTTC AGTTAGCAAAGGGAGAAGAAAAACCAAAAATCTCAAAATGAAGGGTAGGAGATAAAGGATGCAGCTCCAGGAAGGGAGGA ACAACAGTCATGGCGGTGAGCGAACGACAAACAAGACGAGAGAACAAGGAACAGGATGAACTGGCCGCAACCACGACGAG GTCTTGTGGCGTCACATGGTGAGATGTTGCTCGGCCTCTTTGTCTCTCTAACCTTCCAAGATTTTTCTTAACTTTCTACC ATGGTCTGTTTTTTTTACTTTTAACTTGGGTTAAGTAACTTTATTCTGTTTAATTAAAAAAAATTGAAATAGTATACTAA ACAAACGACGTCAAAAAGAACAGTAGTGGCAACTTAAAAAAAGGGGTAGGGTGTAATTTTTATTCAACTTGGGAGTTTAG TGTTATATTAATAAACCTCTAGTTGGGTGTAATTTACTCTTTTGTTTAAATACTTTTCAAAATGTTCAAATATTTGGGCA TATTGCCAAGTGGGTTGATCACGTATATGTAAGCAACAAGAATAGATGTGTTGTTTTACTAGGTTGGGTGAGGGGATAAT CAGGTGCGGCGACTCCAAGTTGAGGAGCAATTAAGAATCCGATGAAAATAAATTGAGGGTTTTTGAGTTTTCACTTTCCA GGTTTCCTCTCAAATTTTCATGAAAAGAAAAACAAGGGAAAGAGGGGTCACGTGACAATTTTGAAGTTTCAATCTTAGCC TTGAATTTCTAATAAAATTAGGGTCAGAACTTACTCCTGGAGTCAAGATATTCCTCCTCTTAAATTATATGGATCTTATT TGTTATAAGAATATCCTTGAAGGATAGCTCAAGTGGTAAGAGCTAAGTACATAAGGGTTGGATGGGATGAAGGGTGAAGG GTCCCGGGTTCGAACCCGGAGGAGGAATTAATTTACTAATAAATCTAACAACTAACATTGGCCTATAAAAAAAATTGTTA TAAGAATTTTAAGGGTGAAGGGTCCCGGGTTCGAACCCGGAGGAGGAATTAATTTACTAATAAATCTAACAACTAACATT GGCCTATAAAAAAAATTGTTATAAGAATTTTAACTAAAGGTGTTGGATAGTGCTCCTCATTAAGTTATTTTAAAACAATC ATTGTACACTTTGTTTGGTAGAGGGAGGTTTGGATAGAGAGAGATGGAGAAGAGAGAGTTAGGGGGAAGTATGTGTGTTT GGTAGGTGAGAGGAGGGAGATAGAGGGGAGAAAAAGTGGTGGGTCCCACCACTTTTTTGGTCTCTCCAAATTGAAGAGAG ATTGAAGAGAGATGAGTGAAGCTTGATTTACACTATGTTTGGGGTCTCTCTCTTCTCTATCTCTCTTCTCTTTAAATCTA CTCTATTTCTCACCTATTTCTCTCTACTCAACTTCTCTCTTCTCTACTCTCTCTTTTCTATCTCTCTCTTCTCTACCAAA CAATTCAACGGGTGTAAGTCACAATGGAGAACTCGATTTTCTTAGAAAAACATTAGACCTTCACCGCATCCGGTTTGAAT TGTGAGAAAAATTTTAAATCATTACATTTTTTTTTTGACACCAGCTGTTATTATTATTAAACTCCAGGATTGGATATAAA AAAAGAAAAGAAAACAGTCCTGGAGTAGATTAATCCGAAATTGAAAATCGTTCTTCTGCCTTGGGTTCGGTATTGCGGAT TTCTCCCTCATCTCATCTCGTCCGTTCTTCACTCCCTACTGTGAGCGCTCTCCCTGTTCTCTCTCGTGCTTTCTGAAAAT GTAGCCTGTGCTGTTTTACTTATATGCCATTTCTACTCGCATCGCATGCTTAAATTATTTTTATTCAATTCAATTCCTTT CCTTTGAATGTTCAAGTTAAACAAGGGATTTCCATAACCTTTGAGGAAGGAGGGTATTGAATATTGATAGGCATATATAT ACATAAACCTGCTATTAGAAATGTGTATTATGTTCGTTCGGCACAATAATAAGAATTAAGAAGGAAGTAGCATAACGTAA CTGACTTTTAGTGAACTGAATGTAACTAACTTTTAGTTGGGTACTTACTTGCCAGTTATAAATAGAGGAGTCATAGCCTC TCTGCTAGGGAACTTTTGGAAATTAGGAATTGGTGTGGGCTAGTTTATTCGGTACAAGAATTCTGTACTGTCATTCTTGA GAAATAAAACATTTCTATCTCTCATTCCTGAATTATATCTATCGTTCCACTCAATTAGGCTTTTGACATGGCCTGATGCT TATCAACATTTTATACATGTATTGAATGATGCCAATACATGTGTTCTTAGTTCTTATACTTCTTATTTTACTCCAGTATA TAATCATGACCTACTGATGGAATAAGAATCATGGATACCTTGTAATAATTGTCATATCAACATGTCAAATTGCATATAGA ATGTCATTACTGAATAATTTTAACTTGCACTTCAAACTTATTTTCAAATTGTTTACATATTGATTTATTATTAAATTTAA TTTATTCATCTAAGTACAATTTCAACATATTTTTATGCTAACATGTGTTGGACAATGACAGTGAAAGGTTCAAAGCTTGT GAAAATGGAGGAGGACAGGGCCCAATAGTCACTGAGTTTCACCATCGTCCTCACTCCGTCCAACACAAACGGCAACAGCA TCTCCAAGTTTGATTTGCACGATGCTCATAACATTTGAAAGATCAATCCTGTTCCCACTTCTCCCATCACGGACATGCCA GGTAATGTTTATTTCATCAGCAAAAATATATGAAGCCATTAAAGTACAATTCATATCATCATTATCTTCTTTTGTTTTGA TTTAGGCTAACACGGATACAAAAACAGCTCTCCTGTGGGGTACTAAATTCTCGACAGCCACAATAACCATCTCACCCAAG GTAACAACAGCTTTGAAAAATAAAAAATAATTACATTTCTTCTATTTACGTTTGAAGAATTCAAACATTTTTCTTTTCAT AGCAGACACGTTGTATCTATTGCATGTTTGTCCAATCGAAATTGAGCCAAAATGTTGGTGATCCTGTGGAGAAGGAGAAG TAGGTTATTGATTCCATTTTCTCTGTCATTTGCTATGTGCTTCATCGTTTAATGGGAGCTTGGATTTGTGAATGATTACT CTTACCTGGGGTGCAGAAAAGGGATGAAGAAAGCGGGAAAGGTAGAGCACCACTTGTGGAAGAAACGAGATTCAGCTCAG TCTGGCCAAAAGGCACTCGCTCTTGTCAGAACTGTATGTTGTCCTACCCCTTGATTTTATGATTTTCTCTTGGTTCAGTA TATTCGTTTTGTCCAGGCCACCCCATGGATGAAATGAACCATTTATTAAGTGCTAACAAAGTAATTTAATACAACAGCAG AATTTTGTGTTGTTTTGTTTATTTTTATTTTATTTAATTTTTTGAACTTGTTGTATTGTGTTGACTTATGGTTGTGGATT GTTAATCTTGTAATGGCAGGTGTCTGAACTCCCTAATGAGAAAGAGGCTGTTTATGGGGCATTAGATAAATGGACGGCTT GGGAAACAGAGTTCCCATTAATTGCAGTAGTTAAGGCTTTGAAAATCTTAAGGAGAAAGCGTCAGTGGGTTCGTGTAATT CAAGTACGGAGACTGCTACTTTAGAGAATTATTGTTGCACTTGTTGCCAAGCGCTTTGTCAGCCTTTATGAATTTCAAGA GAATATATTGCAACTAATGATGTTCAGTTTGTTTGATGACTGATAAATTTTGTTTCCATAACATGTGCTAGAGCTTAAAT GTCTTTATTTATATCTCTCTGGACATTAAAATTGCTTACTGGTGAAAGGAGTGAGTTTTTAGTTTTAAGGAATACTGACA TTGCTCAATCATGCTTTAAGTTTAGCATATAGTTTGAGGTAATGGTTAAATGTTGTATGGTCTTTTAGCTCATCCAAATT TTCCCTCGCTTTTGAAGGTTGTATTTGTATTCAAGTTGCTTAAAGATATGAATCTTAGATATATGCACATATATTTCATA TCAGTACGTTTTCATTCATTTCTGTTTTCTTCATAATAATGTTTAGTCCCTCAATATTGACATTGTTTAATCCTTCTTGA GAATGCCAGAGAATTTTTCTTTAGGTCCACATAAATATGCAAGAACTCTGTCTGCATTTATGAGTGGCATCTCAAGATTG GCAAATTAAGCTCATGCATCTTCGAATTACATGAATTTATGGTGTGCCCTGGTCACTTTTAAGGAGTGGAGAAGAATCTA ACTGGTTATCAATCCTTGGTACTTCTCAGGTAGCAAAGTGGATGTTAAGCAAAGGTCAAGGAGCAACAATGGGAACATAT GACACCCTTCTTCTCGCATTTGATATGGACCAGAGGGTGGATGAGGCAGAATCATTGTGGAATATGATTATACATGCACA CATGCGCTCTGTCTCGAAGAGATTGTTTTCTAGGATGATTTCAGTGTATGATCATCATAATATGCCTGATAAGATTGTAG AGGTATCTTTTGCAGTACCATTAATCTCACTACACTACACCTCATCTTAAATTTATCTTGCAATTCTGAATCTACTCTAT TATGCCTTAACGTATTGATTTTTCGTCTGTATGTTCAGGTATTTGCCGACATGGAAGAGTTGCAGGTAAAACCTGATGAA GATACAGTTAGGAAAGTGGCAAGTGCCTTTAGAAATCTAGGCCAGGAAGAGAAACGGAAATTGGTTATAAAACGATATGG ACTTAAATGGAAGTACATTCACTTCAATGGTGAACGGGTGAGAGTTAGAAGAGAAACATGGGAAGATGATGAATCAACAA ATTGAAATATGTAAATGTGAATGAGGACCACACCTGTTGCTGAGTATAATGCATGACAGGATAACAATTTTTTTTTTCTA AAGCAGAACTTTATGTGATGAAAATAATAATTATGGAGCAACCCTCTCATATGAGTAAACTGTACAGCAAAATAGGCACA CCTAAACCATACCAAAATAAACCAAAAGAGGCAACCGACAAAACCTATACCCATTTCAATCGAAGGAAAAACAACAACGA AACGAAAAATGAAAAAAATACAACATAAACCACAAATAAATCACATACACCTCAAGGAGCCCCATACCTGTCAAATTGAG TACGTTTGAAATGATTCACGCATCCTTCAATGACCTCCTTGTCAATTCCATCCCAACGAAGACTCGACATCTTAGGAGTT CGCACAAACACAATCCTGAGGCTGCGAGCTCGTGAAATGTGGGTGGTTGATAAAGAATTGGGTCTTCGTTGGGATGGAAC TGATGAAGAGACCATTGAAGGCTATGTGAATCATCTCAAGCGTACTCATCCCGATAGGTATAAGGCTCCTTGAGGTGCAC TTCTTTTGTGGTTTAAGTTATGTTTTTTTTTCGTGTTTCGTTTTGTTGTTGTTTTCCTTCGATAGGAGTGGGTATAAGTT CTTTTGGTATGGTTTAGGTGTTGCCTATTTTGCTGCACAGTTTATCCATTTGAGAGGGTTGGTCTCATAATTATTATTTT CATGATAAAAAGTTCTGCTTTGGAAAAAAAATGAAAAAGTTTCATCTTGTCATGCATGACACTTAGCATGAGGATTGTGT GAGCTTGTGAGATGTGAGTGGTTTGTAAAGAGTTGGGGCTTCGTTGGGATGGAACTGACGAGGAGGTCATTGAGGGGTGT GTGAATCACCTCAAACGTACTCATCTCGATAGGTATTGTGCTCCTTGAGGTGTAGTTCAAGGAGTGAGCAATAATAAAAA TTAATCAAATTTTTACAAATTTATTAAAAGATATTATTCTTTCAAAATAATTTATATTTACATTATCAATTA
CDS sequence (LotjaGi1g1v0189500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCATAACATTTGAAAGATCAATCCTGTTCCCACTTCTCCCATCACGGACATGCCAGGCTAACACGGATACAAAAAC AGCTCTCCTGTGGGGTACTAAATTCTCGACAGCCACAATAACCATCTCACCCAAGACACGTTGTATCTATTGCATGTTTG TCCAATCGAAATTGAGCCAAAATGTTGGTGATCCTGTGGAGAAGGAGAAAAAAGGGATGAAGAAAGCGGGAAAGGTAGAG CACCACTTGTGGAAGAAACGAGATTCAGCTCAGTCTGGCCAAAAGGCACTCGCTCTTGTCAGAACTGTGTCTGAACTCCC TAATGAGAAAGAGGCTGTTTATGGGGCATTAGATAAATGGACGGCTTGGGAAACAGAGTTCCCATTAATTGCAGTAGTTA AGGCTTTGAAAATCTTAAGGAGAAAGCGTCAGTGGGTTCGTGTAATTCAAGTAGCAAAGTGGATGTTAAGCAAAGGTCAA GGAGCAACAATGGGAACATATGACACCCTTCTTCTCGCATTTGATATGGACCAGAGGGTGGATGAGGCAGAATCATTGTG GAATATGATTATACATGCACACATGCGCTCTGTCTCGAAGAGATTGTTTTCTAGGATGATTTCAGTGTATGATCATCATA ATATGCCTGATAAGATTGTAGAGGTATCTTTTGCAGTACCATTAATCTCACTACACTACACCTCATCTTAA
Protein sequence (LotjaGi1g1v0189500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLITFERSILFPLLPSRTCQANTDTKTALLWGTKFSTATITISPKTRCIYCMFVQSKLSQNVGDPVEKEKKGMKKAGKVE HHLWKKRDSAQSGQKALALVRTVSELPNEKEAVYGALDKWTAWETEFPLIAVVKALKILRRKRQWVRVIQVAKWMLSKGQ GATMGTYDTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHNMPDKIVEVSFAVPLISLHYTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 222 | 190 | 4.4E-95 | – | |
| PANTHER | 33 | 222 | 190 | 4.4E-95 | – | |
| Gene3D | 92 | 224 | 133 | 1.3E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0189500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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