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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0189700 |
| Transcript ID | LotjaGi1g1v0189700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase-associated protein LEO1; TAIR: AT5G61150.2 leo1-like family protein; Swiss-Prot: sp|Q9FNQ0|VIP4_ARATH Protein LEO1 homolog; TrEMBL-Plants: tr|A0A0L9TFD5|A0A0L9TFD5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0189700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37215190..37222643) extracted from Lotus japonicus Gifu genome v1.2.
ACCTATTTAAGCCAAAATAATATCACTCCGTGGCTGGCTCCCAGTGGGAAACAAACGCAAGTTTTCTACACAAAAAAATA TCAACTAGACAAAATAAAATATCAAAATCAAACTCAGGTTTTCTGTTTAACCGGTGCCGGTGAACAAGCTTTTCATACTC TCCACCGTGCTACGTTTCATTCTTCAATTCACACGCACACGCACACGCACACACAGAGAGATCAAAACGATGGGGGAAGA GAAGCGGCACCAGATGATGCAGAATCTCTTCGGCGACCAATCAGAGGAAGAGGAAGAACTCGATTCCGAACACGAATCGA ACCCCCAACTCGTACGATCGATTTCTCGATCCCAATTTTTCCTGCCCTAGCGAATTTTCAATTGTTGCTCGATTTTTCGA GTTTTTCATGCTTAATTTTTCGTTGTTTTTGGATTTTCAGGATGAGGGGGAGGGAGGGGTGGGGCAGGAAGGTGAAGGAG AAGGTGAGGTGGAGGGTCAGGGAGAGGTGGATGTAATGGAGAGCGAAGGGGAGGATGTTCGTGATGGCGGTGACCCTGGA GAGAGTGAAGGTGAGAGGGAGCAGAGTTCGCAAGAGGTGGAGGTGGAGGAGGAGGAGGAAGAGGAGGAGGTTGGGAATCA GAGGGAACAAGAGAGTGAGGGAAGGGATACAGATAGTGATGCCAAAGATGATGACTATAGTCAGCGAGTTGTTACGAGCA AGCGTAGGGATGTGGTTGAAAGTGGATCGGAGGAGAATCATTACCCTGAGAATGATGATGAGGAAGTCGACGTAGTCGCT AGAAGCCACAGGTATATTTATTATATATGCCCACCATTGTGTTTCTCAATTTTGATGCTTTTTGCTAGTGTAGTGCTTAA TTTCTTTGGTCTAGGGTAACTATTTTGGTATCTTAGGGCTGTTGCAACTTTTTTCTGGTACATCCGAAAGATAAATTGCA CCCTTCAGGGATTGATCCCTACCCACATATCCCCTAGCTCTTACCACTTGAGCTATCAGTCGGGGACAGGGCTGTTGCAA CTTTAAGCTGGGATGTGAAATTGTTTGATTTGATTGTACAAGTTGTGATCCCATTATCAATAGTATCCCTCATAATTTAG TTTTTGATTGAGCTCAATGGCGTAGTGTGATGTGATCCAGATAGCCGACCTCACTTAGTGGGATACAGCTTTTGTTGTTG TTGTTGTATACAAGTTGTGAAATCAGCCTCTTGAAAATGCAAGGTAAATAGACCCGCAATGAGTCCTACTCTCATTGGAC TTCGCCTTAGTGGGAGCTTGAGATCTCTAGTTGCTCTATCTTTTTATGATCAAGTTACCCTGGCTTATTGGAATACTGGT TTCTGGGTTAATGTGCTTTACTCTCATCTCAGTCCATGAAATATTCATAATTTCATTTTAGAAGTCAAAGAAGCCCTCTG TATGCTTGTAAGGCAGGGTGCGTTGCTGTCTATGCATATTTGCCTTGTGCAGAGAGTGCATTCAAAAGTGCCTTCAAATT AATTGCATCTGCGCTTGATTTCATAACTATTTTATAACATTGAATTACAAGTGCCACTATAGGGAAGTTCTATTTGGATA TGGCATGGGTTTTTTTTGGGGGGGGTGGGGGGGGGGTTGGTTGTTTTTGTTTGTAAAGGAAATGGGTCCTCTTTGCTTTC CCACCTTTAGAATTCATGATATTCACCTTTCTTCTGCTTCATCTGCCAATCTATGTTAATACTCTTGATTAATGATGCTA CACTGTCTGAGTATTTGAGAAGCAAACAGACTAAACGGAAAGGCTAAGGTTCTGTTTGTACATTTAAAATTTCATTATTT TACCAATGAATTTAAATGAGCATGTCATGATTGTTTTCATTAGCTTATCAGTGCATGTCATGTTTTACATTGTTGTACCT TAAAATAGAGGATCAACTTGAACAGAGAATTACTGATGACCTAAGCTTTAGTGTGCATAATTTTTGTAACTGTTCCATGA CATTGAGACCGAGATATTATCCCTTTTTTTCTTTGAAAAAATGTAGTGCGTCTCCCAGGGATGACAAAGATCAGACACAT GATTTGCATTCTGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAGGATATGGGGTATGCAGC TCAGAAAGACATTGAACAAGATTCAAATGTGAGTGTCATGCATCAGCAGTGACATATTTCATTTATCTTTAAATTGCCCA AATTTTATGTAAGTGATTCCCTCCTTAGAGATATCCTGTGGAGGAAGAAGGAAGTTATGGAAAGAGCCTAAGACCAGAGG ATATACTTGCTGATGAAGATCATCGATATGAATCAGAGGAAGAAAACACTGAGATGAAAACCAAAGAGAGGCCACTTGGC CCCCCATTGGAATTAGAGATTCCACTACAACCCCCTCCAGCTCTTCCAGAAAAGGTCTGCCTGCGTTTTGTATTATATCT TCAAATTTTGTTGAACACAGTTGCTGTCAAATACATTTAGTTACTATTCTTCTGCTTGTATAGTTTACATCTTTACAATC AAGAAGTTGGTGGGTGCAGAATGAATTTCTGGATTTTGAAATGTTTAAAGGAGCATATCTTTTAGGGCAACTTCTTGATT AATTTCCTGATGTCTTGGTTTGTGAGATGTTGCTAATGTGATAGGAATTTAACAATCTTGGATTATGATAACAAGGTTAC AATAAATACATTTTAATATGTGGTATTGCTTCAGAGGATCTTATCTACAAATGAAACACCTTTTACTGTATGATGTCCAT TCTGGTAAGATATGTTGAATTTCAATATTCAATTACACTTGCTATCTCTCTTTTTGTGGCAGATGAACATGATAAAAGTT TCCAATATTATGGGCGTTGACCCAAAACCATTTGATCCCAAGACATATGTGGAAGAGGATACCTTTGTTACTGATGAATC TGGAGCCAAGAAACGTATTCGCTTGGAGAACAATATTGTGCGCTGGAGGGATGTTAGAAATCCTGACGGCACAAAATCAG TAAGTAATTGTGTTATTGTAATTTCTTTGGCATGCTACCATGATCACCGATTGGGGTGAAGGACATTATATTCTTATGCA TGCCTTCATTTTACCTTCTTCTCATCCATGGTATCCTTTTCTATTACCTGTACAATTTTAGTTATGTTATAAAAAAAATT ATTTTGAATATCAAGCTTCATGCTCAGATGAATTCAAGATAATTAGGCCAAATGTATCTGAAGAGTTTGGAGTTTACAGT TTCTTTTGTATGTATGGCTTAAATTTTGTACATGCTTCACGCCATTTGATTTAGTTTTGATGCATATGGATGGACAAGGT TTTTATGCATTGTATTTGGTTGAAATTTTCTTAATGAAGTTTATGATATTTTAAGGATTTGGTGAAATTTGGCCTTCATA GTTCTTTCCTTATTTGCTGAGATTCTCCCAGTGATGTTGGTGGTTTCGATTATGACTAATTGAGATATTATACTTTACCA AATGAATAGGTGAAGTTAAAATGATTGATGTTTGATTGTTTAGTGACAACTGGCAAGTCTTCTGTGGACAAGGTTATGAA CCACATAAATCATTACTAGAATAGGACATGAAAGGTAGAAAAGTAAAATGTATGATTGTAACACAGGACAGAAGATCCTT CCTCCACGTATACATTTATATTTCAAAATTTATATGTATATAATAACACCAGCAATAACAATACCTTTGAAGTAGCGAGT AAAATTCAATTAAATTCTATTTTAAAATACATAATATGTTTGTGTTATTTGTATTTTTACCTTTCTCATGAGATGATTGA GACTTAGTTTTTTTATTTTCTGTCAAATTGGGAATTCGGGTTCTTTCATAGAAATAATGTAAGCTCTTGGTTGAGTTCTA TCATCTTATCACTCAGTTTTTTTTATCTCTCACCCTTCAGCCCATGGGGGTAGCCTGGAGGCAAAGTTCAGTAGAATGGG TGTTTGCAAGTTGCAGTTTAACCTGCTGTCCTCTTTGTTAGAGCTTCTATCCAATACTAAGCCTTGAGTTTTGGAACTGA ATGATTTTTCTTTTACCACGGACCTGGATGAATGACAAAAGCAGCCCAAGAAGAAGGCACTTCAAGAGATTTTACTGAGT TAGGTTCAGTCACAGCAGTCAAAGGATTATATTTTTCCTGGGCAGTTTTATAAATTTTCACAGTAGAGTAAACAGATTTT TTTTTTTGTAAGTTTTGGGTGGGTTACTTCTGGGTTTTACTGGGGTGCTATCTGGTAGATCAGGTAGAATCCTTAACTGC ATGATCCTACTGATTCTACAGACTGAAATGTGGTTCCATCACAGTCCAGCAAAATGAGGTTGTTGCGGGGCTTGCCTTGG GGTCGCTCCATCATTTTAGGCACATACAATTCTATGAGATCACTGATTTTTAAACCATACCTATGGGACTAGGTGTTGTA TAATCCAGTGAGATTTGAGTATGTGAAAATACTGTAACAAAGTCCAAACTGAATAGGACAAACCAATGAAGTTGTTTGCA ATAACTAGGAATAAAATGGTCCTCTTTTTACATACATCCTTTCACTCTATAGCATACACAACAACCAAATCGATTTCCAC TAGGTGGGTTGGCTATATGAATCCTTTCACTATATTGGTTTCAAATGTTTTCGGGCCCTAAATCATATATTGATTTGATA AAAAATAATATTGATTTGATTTAATATTATGGTGACAAAATATGCTTGTTCTCTATTTTCTTGTGCATTTGCAGAGTCGA ATAATATTTTTCTTAATGAAGGTGAACTTACAAGTAGCTTAAGCATGAAATTGAATCTAGCATGTATTGCTGCTAAAATG GTACAGAAAGATTGTCTTTTGAAAGTGTTATATGGAATCTTTTTACATTACTGAAAGAGTGTGGACAGCATGGCTGCATA TGTTCTTATGCATTGTAACTGTACTTTAACCTTTTACAGCCAAAATAATTTCATTGAGCTACATCACTAATTGTTAAGTA AAAAAATATTATTCATGATTAGGTTGAAAGCAATGCTCGCTTTGTGAGGTGGTCTGATGGAAGTGTGCAGTTATTAATTG GGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCTCATCTTTTCCTTAGACACGGAAAGGTGAAT TTTGTTGCTCTCATAGCTACCTCAATGAATTATTGTTTCCTCAATGGACTGTGTGTACATCTTTACAGGGAGTCCTCCAA TCACAAGGAAGACTATTGAGGAAAATGAGGTTTATGCCATCTTCCTTGACATCAAATTCTCATCGGCTGTTGACTGCTCT TGTTGACTCAAGGCATAAGAAGGTTTACAAGGTCAAAAACTGCATTACTGACATTGATCCTGAGAGGGAAAAAGAGGAAA AAGAGAAGGTATAATCAATCATGGAAAGTAGTCATGTGCTTGTATTGCGTCTCTTGAATACCATTATGCATTATCCAATT TCTGAATTGTTTTTACAGGCTGAAAGTCAAACAATCAGGGCTAACGTAATTCTTAACCGTAAGCGTGAAAAGTTGAGCCG GAAATATACTCCAGCAGTTGAGAGGAGACGTCAACTTTCTCCTGGATTTTTGGAGGATGCTTTGGATGAGGTATGATTTT AGGATTTGTTTCCTCTTCATGACATTGTTGTCCCTAATTGCTTAAGTGTTGCAACCTTATGTAAGCAATATGCATACTTA AACTGATCCCTTCTTCAATAATGTTCCCTTTCTTCAGGATGATGAAGCAGATTATTATGATTCTCGTCCTTCACAACGCC GCTTTGAGGAAGATTTGGAAGAGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGGTATTATTATTCAGTCTA TAGAAATTTGGACATTTGTTGATTATGTTTGCATGCATCATCAATGAGGGCTATTTTCTGGAATTAAGTCTCAGGTATCC AAAGATATCCCTCGTAAGTCATCCTTCCCACCAGCTAAATCCTCCAGGCACCCAATGAGTTATCCAGATGACGAGAGAGA GGAGTCTGAGTACGAAACTGATGACGAGGAAGACGAGAGGCCTCTTCCCCATAAGAGGGACGAGGATACTGAGCCAGAGT ATGAGGATGAGGACGAAGAACCCTATGAAGAAAGGGCACAAGTTAATGATGCATCAGATGAGGAGGAAGAAGAGGTACTG AACTACTGATTATGCTATGAAAAAATACCTGTCTCTAACTTTGGCCATAGATCAATAGATTATTTCTAATAAATTTCTGA ATGCTTATTTACGTGTTATTGGCCTTTGTTTGCAAGCTTGAGATTCTTCAACAGAGATTTGGATACTTTGTGCGTCTTTG ACTCTTAATTTTTATAGGAACTTTGAAGGAAAATACTAGTTTGGATTAGTTAATCATTGATGTTGCATCAATGTGTTGAG TATTGTGTTTTTTCTTTTTTCTATTTTGGGTTTTCTTGTGGTGATTTCTGCACTGAGTAGTTGTAGATGTCTGTTGGGTT GCAACCTATAGACCTGCGGTGATTGTAGAATATAAAGGTTGAAAATAAGGATGATAATATGATCAATTTCTGTGGCTTAT TTGGTATTTTCTTGCAGGAGCCAAAGCAAAAGAGTAAAGGCAGTGTCAAAAGGAAGGGATTTGAATCTGATGAGGACTCT CCTCCAAGGAAAACAACAGCCCATCGGCGTATGGCAGTTGTATATGACAGTGATGATGAATGAATTTCCTTAGGCCAGAT TTTCATAGTGAGTAGCAGTAACCTTGAATTTAATACATGAGTATGTTTTTTTTTATGTCCTCCTCTCAGCATCGTATTTT ACTGTTGTAAGGTTTACTTGACCTCTGAAGAGTAGGATTTCAGTATAAAATTTACTGTGTTGTTCGGGGGAATTGATTCG AGTTTTGATTGCTCTTTTGTTTTTGTTTTTAAAATTCAGGATGTTGCAACTGGAATTGGATATGCCCAACATTTGGATAC ATCATAAGCTGAGATGGATCTTTTTGTCTTTTTCCCCTTGGTTTTTCTTATATAAGATAAAACATAAATTGGTTCATCCT TATTCTTAACTATGAGCCAGGCACACGGATGTAGTTTTATTCTGAGGTCAGAATCTCTGTTGTTAACTTAACTGTCTTGC TAATTGTGATCAGAAGATCAGTGTACATAAGTTTGATTTCTGTATTTTCAATTCGGAACATTTACTATTTGTTTTGGGCT ACAAAAAATAAATTGACCAACATTAAAAATCCATTTCCTTAAAAGAGAACGAAAAGCAAAAGTTCTCATACAAGGTAGTC AAATCGAGATACGTATCGTGTATCGCTAGACCCTAATTCCGTGTCGCGTATCGTATCGTAATGTGTATCGTAAGATACAG ACACAAAAAAAATT
CDS sequence (LotjaGi1g1v0189700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGAGAAGCGGCACCAGATGATGCAGAATCTCTTCGGCGACCAATCAGAGGAAGAGGAAGAACTCGATTCCGA ACACGAATCGAACCCCCAACTCGATGAGGGGGAGGGAGGGGTGGGGCAGGAAGGTGAAGGAGAAGGTGAGGTGGAGGGTC AGGGAGAGGTGGATGTAATGGAGAGCGAAGGGGAGGATGTTCGTGATGGCGGTGACCCTGGAGAGAGTGAAGGTGAGAGG GAGCAGAGTTCGCAAGAGGTGGAGGTGGAGGAGGAGGAGGAAGAGGAGGAGGTTGGGAATCAGAGGGAACAAGAGAGTGA GGGAAGGGATACAGATAGTGATGCCAAAGATGATGACTATAGTCAGCGAGTTGTTACGAGCAAGCGTAGGGATGTGGTTG AAAGTGGATCGGAGGAGAATCATTACCCTGAGAATGATGATGAGGAAGTCGACGTAGTCGCTAGAAGCCACAGTGCGTCT CCCAGGGATGACAAAGATCAGACACATGATTTGCATTCTGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGA TGAAGAGGAGGATATGGGGTATGCAGCTCAGAAAGACATTGAACAAGATTCAAATAGATATCCTGTGGAGGAAGAAGGAA GTTATGGAAAGAGCCTAAGACCAGAGGATATACTTGCTGATGAAGATCATCGATATGAATCAGAGGAAGAAAACACTGAG ATGAAAACCAAAGAGAGGCCACTTGGCCCCCCATTGGAATTAGAGATTCCACTACAACCCCCTCCAGCTCTTCCAGAAAA GATGAACATGATAAAAGTTTCCAATATTATGGGCGTTGACCCAAAACCATTTGATCCCAAGACATATGTGGAAGAGGATA CCTTTGTTACTGATGAATCTGGAGCCAAGAAACGTATTCGCTTGGAGAACAATATTGTGCGCTGGAGGGATGTTAGAAAT CCTGACGGCACAAAATCAGTTGAAAGCAATGCTCGCTTTGTGAGGTGGTCTGATGGAAGTGTGCAGTTATTAATTGGGAA TGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCTCATCTTTTCCTTAGACACGGAAAGGGAGTCCTCC AATCACAAGGAAGACTATTGAGGAAAATGAGGTTTATGCCATCTTCCTTGACATCAAATTCTCATCGGCTGTTGACTGCT CTTGTTGACTCAAGGCATAAGAAGGTTTACAAGGTCAAAAACTGCATTACTGACATTGATCCTGAGAGGGAAAAAGAGGA AAAAGAGAAGGCTGAAAGTCAAACAATCAGGGCTAACGTAATTCTTAACCGTAAGCGTGAAAAGTTGAGCCGGAAATATA CTCCAGCAGTTGAGAGGAGACGTCAACTTTCTCCTGGATTTTTGGAGGATGCTTTGGATGAGGATGATGAAGCAGATTAT TATGATTCTCGTCCTTCACAACGCCGCTTTGAGGAAGATTTGGAAGAGGAAGCCCGAGCAGAGAAACGAATTATGAATGC TAAAAAGTCTCAGGTATCCAAAGATATCCCTCGTAAGTCATCCTTCCCACCAGCTAAATCCTCCAGGCACCCAATGAGTT ATCCAGATGACGAGAGAGAGGAGTCTGAGTACGAAACTGATGACGAGGAAGACGAGAGGCCTCTTCCCCATAAGAGGGAC GAGGATACTGAGCCAGAGTATGAGGATGAGGACGAAGAACCCTATGAAGAAAGGGCACAAGTTAATGATGCATCAGATGA GGAGGAAGAAGAGGAGCCAAAGCAAAAGAGTAAAGGCAGTGTCAAAAGGAAGGGATTTGAATCTGATGAGGACTCTCCTC CAAGGAAAACAACAGCCCATCGGCGTATGGCAGTTGTATATGACAGTGATGATGAATGA
Protein sequence (LotjaGi1g1v0189700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEKRHQMMQNLFGDQSEEEEELDSEHESNPQLDEGEGGVGQEGEGEGEVEGQGEVDVMESEGEDVRDGGDPGESEGER EQSSQEVEVEEEEEEEEVGNQREQESEGRDTDSDAKDDDYSQRVVTSKRRDVVESGSEENHYPENDDEEVDVVARSHSAS PRDDKDQTHDLHSAPEIRDVFGDFDDDEEEDMGYAAQKDIEQDSNRYPVEEEGSYGKSLRPEDILADEDHRYESEEENTE MKTKERPLGPPLELEIPLQPPPALPEKMNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRN PDGTKSVESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMPSSLTSNSHRLLTA LVDSRHKKVYKVKNCITDIDPEREKEEKEKAESQTIRANVILNRKREKLSRKYTPAVERRRQLSPGFLEDALDEDDEADY YDSRPSQRRFEEDLEEEARAEKRIMNAKKSQVSKDIPRKSSFPPAKSSRHPMSYPDDEREESEYETDDEEDERPLPHKRD EDTEPEYEDEDEEPYEERAQVNDASDEEEEEEPKQKSKGSVKRKGFESDEDSPPRKTTAHRRMAVVYDSDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 252 | 252 | - | – | |
| PANTHER | 3 | 612 | 610 | 7.8E-146 | ||
| MobiDBLite | 41 | 63 | 23 | - | – | |
| MobiDBLite | 64 | 83 | 20 | - | – | |
| Coils | 84 | 104 | 21 | - | – | |
| MobiDBLite | 84 | 101 | 18 | - | – | |
| MobiDBLite | 102 | 140 | 39 | - | – | |
| MobiDBLite | 147 | 180 | 34 | - | – | |
| MobiDBLite | 203 | 249 | 47 | - | – | |
| Pfam | 270 | 429 | 160 | 9.6E-47 | ||
| MobiDBLite | 461 | 632 | 172 | - | – | |
| MobiDBLite | 481 | 515 | 35 | - | – | |
| Coils | 491 | 511 | 21 | - | – | |
| MobiDBLite | 564 | 590 | 27 | - | – | |
| MobiDBLite | 591 | 632 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription elongation from RNA polymerase II promoter | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. | ||
| Biological process | Histone modification | The covalent alteration of one or more amino acid residues within a histone protein. | ||
| Cellular component | Cdc73/Paf1 complex | A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. |
Expression pattern of LotjaGi1g1v0189700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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