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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0189700 |
| Transcript ID | LotjaGi1g1v0189700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase-associated protein LEO1; TAIR: AT5G61150.2 leo1-like family protein; Swiss-Prot: sp|Q9FNQ0|VIP4_ARATH Protein LEO1 homolog; TrEMBL-Plants: tr|A0A0L9TFD5|A0A0L9TFD5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0189700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37215861..37222417) extracted from Lotus japonicus Gifu genome v1.2.
ACGATGGGGGAAGAGAAGCGGCACCAGATGATGCAGAATCTCTTCGGCGACCAATCAGAGGAAGAGGAAGAACTCGATTC CGAACACGAATCGAACCCCCAACTCGTACGATCGATTTCTCGATCCCAATTTTTCCTGCCCTAGCGAATTTTCAATTGTT GCTCGATTTTTCGAGTTTTTCATGCTTAATTTTTCGTTGTTTTTGGATTTTCAGGATGAGGGGGAGGGAGGGGTGGGGCA GGAAGGTGAAGGAGAAGGTGAGGTGGAGGGTCAGGGAGAGGTGGATGTAATGGAGAGCGAAGGGGAGGATGTTCGTGATG GCGGTGACCCTGGAGAGAGTGAAGGTGAGAGGGAGCAGAGTTCGCAAGAGGTGGAGGTGGAGGAGGAGGAGGAAGAGGAG GAGGTTGGGAATCAGAGGGAACAAGAGAGTGAGGGAAGGGATACAGATAGTGATGCCAAAGATGATGACTATAGTCAGCG AGTTGTTACGAGCAAGCGTAGGGATGTGGTTGAAAGTGGATCGGAGGAGAATCATTACCCTGAGAATGATGATGAGGAAG TCGACGTAGTCGCTAGAAGCCACAGGTATATTTATTATATATGCCCACCATTGTGTTTCTCAATTTTGATGCTTTTTGCT AGTGTAGTGCTTAATTTCTTTGGTCTAGGGTAACTATTTTGGTATCTTAGGGCTGTTGCAACTTTTTTCTGGTACATCCG AAAGATAAATTGCACCCTTCAGGGATTGATCCCTACCCACATATCCCCTAGCTCTTACCACTTGAGCTATCAGTCGGGGA CAGGGCTGTTGCAACTTTAAGCTGGGATGTGAAATTGTTTGATTTGATTGTACAAGTTGTGATCCCATTATCAATAGTAT CCCTCATAATTTAGTTTTTGATTGAGCTCAATGGCGTAGTGTGATGTGATCCAGATAGCCGACCTCACTTAGTGGGATAC AGCTTTTGTTGTTGTTGTTGTATACAAGTTGTGAAATCAGCCTCTTGAAAATGCAAGGTAAATAGACCCGCAATGAGTCC TACTCTCATTGGACTTCGCCTTAGTGGGAGCTTGAGATCTCTAGTTGCTCTATCTTTTTATGATCAAGTTACCCTGGCTT ATTGGAATACTGGTTTCTGGGTTAATGTGCTTTACTCTCATCTCAGTCCATGAAATATTCATAATTTCATTTTAGAAGTC AAAGAAGCCCTCTGTATGCTTGTAAGGCAGGGTGCGTTGCTGTCTATGCATATTTGCCTTGTGCAGAGAGTGCATTCAAA AGTGCCTTCAAATTAATTGCATCTGCGCTTGATTTCATAACTATTTTATAACATTGAATTACAAGTGCCACTATAGGGAA GTTCTATTTGGATATGGCATGGGTTTTTTTTGGGGGGGGTGGGGGGGGGGTTGGTTGTTTTTGTTTGTAAAGGAAATGGG TCCTCTTTGCTTTCCCACCTTTAGAATTCATGATATTCACCTTTCTTCTGCTTCATCTGCCAATCTATGTTAATACTCTT GATTAATGATGCTACACTGTCTGAGTATTTGAGAAGCAAACAGACTAAACGGAAAGGCTAAGGTTCTGTTTGTACATTTA AAATTTCATTATTTTACCAATGAATTTAAATGAGCATGTCATGATTGTTTTCATTAGCTTATCAGTGCATGTCATGTTTT ACATTGTTGTACCTTAAAATAGAGGATCAACTTGAACAGAGAATTACTGATGACCTAAGCTTTAGTGTGCATAATTTTTG TAACTGTTCCATGACATTGAGACCGAGATATTATCCCTTTTTTTCTTTGAAAAAATGTAGTGCGTCTCCCAGGGATGACA AAGATCAGACACATGATTTGCATTCTGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAGGAT ATGGGGTATGCAGCTCAGAAAGACATTGAACAAGATTCAAATGTGAGTGTCATGCATCAGCAGTGACATATTTCATTTAT CTTTAAATTGCCCAAATTTTATGTAAGTGATTCCCTCCTTAGAGATATCCTGTGGAGGAAGAAGGAAGTTATGGAAAGAG CCTAAGACCAGAGGATATACTTGCTGATGAAGATCATCGATATGAATCAGAGGAAGAAAACACTGAGATGAAAACCAAAG AGAGGCCACTTGGCCCCCCATTGGAATTAGAGATTCCACTACAACCCCCTCCAGCTCTTCCAGAAAAGGTCTGCCTGCGT TTTGTATTATATCTTCAAATTTTGTTGAACACAGTTGCTGTCAAATACATTTAGTTACTATTCTTCTGCTTGTATAGTTT ACATCTTTACAATCAAGAAGTTGGTGGGTGCAGAATGAATTTCTGGATTTTGAAATGTTTAAAGGAGCATATCTTTTAGG GCAACTTCTTGATTAATTTCCTGATGTCTTGGTTTGTGAGATGTTGCTAATGTGATAGGAATTTAACAATCTTGGATTAT GATAACAAGGTTACAATAAATACATTTTAATATGTGGTATTGCTTCAGAGGATCTTATCTACAAATGAAACACCTTTTAC TGTATGATGTCCATTCTGGTAAGATATGTTGAATTTCAATATTCAATTACACTTGCTATCTCTCTTTTTGTGGCAGATGA ACATGATAAAAGTTTCCAATATTATGGGCGTTGACCCAAAACCATTTGATCCCAAGACATATGTGGAAGAGGATACCTTT GTTACTGATGAATCTGGAGCCAAGAAACGTATTCGCTTGGAGAACAATATTGTGCGCTGGAGGGATGTTAGAAATCCTGA CGGCACAAAATCAGTAAGTAATTGTGTTATTGTAATTTCTTTGGCATGCTACCATGATCACCGATTGGGGTGAAGGACAT TATATTCTTATGCATGCCTTCATTTTACCTTCTTCTCATCCATGGTATCCTTTTCTATTACCTGTACAATTTTAGTTATG TTATAAAAAAAATTATTTTGAATATCAAGCTTCATGCTCAGATGAATTCAAGATAATTAGGCCAAATGTATCTGAAGAGT TTGGAGTTTACAGTTTCTTTTGTATGTATGGCTTAAATTTTGTACATGCTTCACGCCATTTGATTTAGTTTTGATGCATA TGGATGGACAAGGTTTTTATGCATTGTATTTGGTTGAAATTTTCTTAATGAAGTTTATGATATTTTAAGGATTTGGTGAA ATTTGGCCTTCATAGTTCTTTCCTTATTTGCTGAGATTCTCCCAGTGATGTTGGTGGTTTCGATTATGACTAATTGAGAT ATTATACTTTACCAAATGAATAGGTGAAGTTAAAATGATTGATGTTTGATTGTTTAGTGACAACTGGCAAGTCTTCTGTG GACAAGGTTATGAACCACATAAATCATTACTAGAATAGGACATGAAAGGTAGAAAAGTAAAATGTATGATTGTAACACAG GACAGAAGATCCTTCCTCCACGTATACATTTATATTTCAAAATTTATATGTATATAATAACACCAGCAATAACAATACCT TTGAAGTAGCGAGTAAAATTCAATTAAATTCTATTTTAAAATACATAATATGTTTGTGTTATTTGTATTTTTACCTTTCT CATGAGATGATTGAGACTTAGTTTTTTTATTTTCTGTCAAATTGGGAATTCGGGTTCTTTCATAGAAATAATGTAAGCTC TTGGTTGAGTTCTATCATCTTATCACTCAGTTTTTTTTATCTCTCACCCTTCAGCCCATGGGGGTAGCCTGGAGGCAAAG TTCAGTAGAATGGGTGTTTGCAAGTTGCAGTTTAACCTGCTGTCCTCTTTGTTAGAGCTTCTATCCAATACTAAGCCTTG AGTTTTGGAACTGAATGATTTTTCTTTTACCACGGACCTGGATGAATGACAAAAGCAGCCCAAGAAGAAGGCACTTCAAG AGATTTTACTGAGTTAGGTTCAGTCACAGCAGTCAAAGGATTATATTTTTCCTGGGCAGTTTTATAAATTTTCACAGTAG AGTAAACAGATTTTTTTTTTTGTAAGTTTTGGGTGGGTTACTTCTGGGTTTTACTGGGGTGCTATCTGGTAGATCAGGTA GAATCCTTAACTGCATGATCCTACTGATTCTACAGACTGAAATGTGGTTCCATCACAGTCCAGCAAAATGAGGTTGTTGC GGGGCTTGCCTTGGGGTCGCTCCATCATTTTAGGCACATACAATTCTATGAGATCACTGATTTTTAAACCATACCTATGG GACTAGGTGTTGTATAATCCAGTGAGATTTGAGTATGTGAAAATACTGTAACAAAGTCCAAACTGAATAGGACAAACCAA TGAAGTTGTTTGCAATAACTAGGAATAAAATGGTCCTCTTTTTACATACATCCTTTCACTCTATAGCATACACAACAACC AAATCGATTTCCACTAGGTGGGTTGGCTATATGAATCCTTTCACTATATTGGTTTCAAATGTTTTCGGGCCCTAAATCAT ATATTGATTTGATAAAAAATAATATTGATTTGATTTAATATTATGGTGACAAAATATGCTTGTTCTCTATTTTCTTGTGC ATTTGCAGAGTCGAATAATATTTTTCTTAATGAAGGTGAACTTACAAGTAGCTTAAGCATGAAATTGAATCTAGCATGTA TTGCTGCTAAAATGGTACAGAAAGATTGTCTTTTGAAAGTGTTATATGGAATCTTTTTACATTACTGAAAGAGTGTGGAC AGCATGGCTGCATATGTTCTTATGCATTGTAACTGTACTTTAACCTTTTACAGCCAAAATAATTTCATTGAGCTACATCA CTAATTGTTAAGTAAAAAAATATTATTCATGATTAGGTTGAAAGCAATGCTCGCTTTGTGAGGTGGTCTGATGGAAGTGT GCAGTTATTAATTGGGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCTCATCTTTTCCTTAGAC ACGGAAAGGTGAATTTTGTTGCTCTCATAGCTACCTCAATGAATTATTGTTTCCTCAATGGACTGTGTGTACATCTTTAC AGGGAGTCCTCCAATCACAAGGAAGACTATTGAGGAAAATGAGGTTTATGCCATCTTCCTTGACATCAAATTCTCATCGG CTGTTGACTGCTCTTGTTGACTCAAGGCATAAGAAGGTTTACAAGGTCAAAAACTGCATTACTGACATTGATCCTGAGAG GGAAAAAGAGGAAAAAGAGAAGGTATAATCAATCATGGAAAGTAGTCATGTGCTTGTATTGCGTCTCTTGAATACCATTA TGCATTATCCAATTTCTGAATTGTTTTTACAGGCTGAAAGTCAAACAATCAGGGCTAACGTAATTCTTAACCGTAAGCGT GAAAAGTTGAGCCGGAAATATACTCCAGCAGTTGAGAGGAGACGTCAACTTTCTCCTGGATTTTTGGAGGATGCTTTGGA TGAGGTATGATTTTAGGATTTGTTTCCTCTTCATGACATTGTTGTCCCTAATTGCTTAAGTGTTGCAACCTTATGTAAGC AATATGCATACTTAAACTGATCCCTTCTTCAATAATGTTCCCTTTCTTCAGGATGATGAAGCAGATTATTATGATTCTCG TCCTTCACAACGCCGCTTTGAGGAAGATTTGGAAGAGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGGTAT TATTATTCAGTCTATAGAAATTTGGACATTTGTTGATTATGTTTGCATGCATCATCAATGAGGGCTATTTTCTGGAATTA AGTCTCAGGTATCCAAAGATATCCCTCGTAAGTCATCCTTCCCACCAGCTAAATCCTCCAGGCACCCAATGAGTTATCCA GATGACGAGAGAGAGGAGTCTGAGTACGAAACTGATGACGAGGAAGACGAGAGGCCTCTTCCCCATAAGAGGGACGAGGA TACTGAGCCAGAGTATGAGGATGAGGACGAAGAACCCTATGAAGAAAGGGCACAAGTTAATGATGCATCAGATGAGGAGG AAGAAGAGGTACTGAACTACTGATTATGCTATGAAAAAATACCTGTCTCTAACTTTGGCCATAGATCAATAGATTATTTC TAATAAATTTCTGAATGCTTATTTACGTGTTATTGGCCTTTGTTTGCAAGCTTGAGATTCTTCAACAGAGATTTGGATAC TTTGTGCGTCTTTGACTCTTAATTTTTATAGGAACTTTGAAGGAAAATACTAGTTTGGATTAGTTAATCATTGATGTTGC ATCAATGTGTTGAGTATTGTGTTTTTTCTTTTTTCTATTTTGGGTTTTCTTGTGGTGATTTCTGCACTGAGTAGTTGTAG ATGTCTGTTGGGTTGCAACCTATAGACCTGCGGTGATTGTAGAATATAAAGGTTGAAAATAAGGATGATAATATGATCAA TTTCTGTGGCTTATTTGGTATTTTCTTGCAGGAGCCAAAGCAAAAGAGTAAAGGCAGTGTCAAAAGGAAGGGATTTGAAT CTGATGAGGACTCTCCTCCAAGGAAAACAACAGCCCATCGGCGTATGGCAGTTGTATATGACAGTGATGATGAATGA
CDS sequence (LotjaGi1g1v0189700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGTGATGGTGGAGGTGGAGGAGGAGGAGGAAGAGGAGGAGGTTGGGAATCAGAGGGAACAAGAGAGTGAGGGAAG GGATACAGATAGTGATGCCAAAGATGATGACTATAGTCAGCGAGTTGTTACGAGCAAGCGTAGGGATGTGGTTGAAAGTG GATCGGAGGAGAATCATTACCCTGAGAATGATGATGAGGAAGTCGACGTAGTCGCTAGAAGCCACAGTGCGTCTCCCAGG GATGACAAAGATCAGACACATGATTTGCATTCTGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGA GGAGGATATGGGGTATGCAGCTCAGAAAGACATTGAACAAGATTCAAATAGATATCCTGTGGAGGAAGAAGGAAGTTATG GAAAGAGCCTAAGACCAGAGGATATACTTGCTGATGAAGATCATCGATATGAATCAGAGGAAGAAAACACTGAGATGAAA ACCAAAGAGAGGCCACTTGGCCCCCCATTGGAATTAGAGATTCCACTACAACCCCCTCCAGCTCTTCCAGAAAAGATGAA CATGATAAAAGTTTCCAATATTATGGGCGTTGACCCAAAACCATTTGATCCCAAGACATATGTGGAAGAGGATACCTTTG TTACTGATGAATCTGGAGCCAAGAAACGTATTCGCTTGGAGAACAATATTGTGCGCTGGAGGGATGTTAGAAATCCTGAC GGCACAAAATCAGTTGAAAGCAATGCTCGCTTTGTGAGGTGGTCTGATGGAAGTGTGCAGTTATTAATTGGGAATGAAGT TCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCTCATCTTTTCCTTAGACACGGAAAGGGAGTCCTCCAATCAC AAGGAAGACTATTGAGGAAAATGAGGTTTATGCCATCTTCCTTGACATCAAATTCTCATCGGCTGTTGACTGCTCTTGTT GACTCAAGGCATAAGAAGGTTTACAAGGTCAAAAACTGCATTACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGA GAAGGCTGAAAGTCAAACAATCAGGGCTAACGTAATTCTTAACCGTAAGCGTGAAAAGTTGAGCCGGAAATATACTCCAG CAGTTGAGAGGAGACGTCAACTTTCTCCTGGATTTTTGGAGGATGCTTTGGATGAGGATGATGAAGCAGATTATTATGAT TCTCGTCCTTCACAACGCCGCTTTGAGGAAGATTTGGAAGAGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAA GTCTCAGGTATCCAAAGATATCCCTCGTAAGTCATCCTTCCCACCAGCTAAATCCTCCAGGCACCCAATGAGTTATCCAG ATGACGAGAGAGAGGAGTCTGAGTACGAAACTGATGACGAGGAAGACGAGAGGCCTCTTCCCCATAAGAGGGACGAGGAT ACTGAGCCAGAGTATGAGGATGAGGACGAAGAACCCTATGAAGAAAGGGCACAAGTTAATGATGCATCAGATGAGGAGGA AGAAGAGGAGCCAAAGCAAAAGAGTAAAGGCAGTGTCAAAAGGAAGGGATTTGAATCTGATGAGGACTCTCCTCCAAGGA AAACAACAGCCCATCGGCGTATGGCAGTTGTATATGACAGTGATGATGAATGA
Protein sequence (LotjaGi1g1v0189700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVMVEVEEEEEEEEVGNQREQESEGRDTDSDAKDDDYSQRVVTSKRRDVVESGSEENHYPENDDEEVDVVARSHSASPR DDKDQTHDLHSAPEIRDVFGDFDDDEEEDMGYAAQKDIEQDSNRYPVEEEGSYGKSLRPEDILADEDHRYESEEENTEMK TKERPLGPPLELEIPLQPPPALPEKMNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRNPD GTKSVESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMPSSLTSNSHRLLTALV DSRHKKVYKVKNCITDIDPEREKEEKEKAESQTIRANVILNRKREKLSRKYTPAVERRRQLSPGFLEDALDEDDEADYYD SRPSQRRFEEDLEEEARAEKRIMNAKKSQVSKDIPRKSSFPPAKSSRHPMSYPDDEREESEYETDDEEDERPLPHKRDED TEPEYEDEDEEPYEERAQVNDASDEEEEEEPKQKSKGSVKRKGFESDEDSPPRKTTAHRRMAVVYDSDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 170 | 170 | - | – | |
| MobiDBLite | 1 | 19 | 19 | - | – | |
| PANTHER | 8 | 530 | 523 | 9.6E-151 | ||
| MobiDBLite | 20 | 58 | 39 | - | – | |
| MobiDBLite | 65 | 98 | 34 | - | – | |
| MobiDBLite | 121 | 167 | 47 | - | – | |
| Pfam | 188 | 347 | 160 | 7.4E-47 | ||
| MobiDBLite | 379 | 550 | 172 | - | – | |
| MobiDBLite | 399 | 433 | 35 | - | – | |
| Coils | 409 | 429 | 21 | - | – | |
| MobiDBLite | 482 | 508 | 27 | - | – | |
| MobiDBLite | 509 | 550 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription elongation from RNA polymerase II promoter | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. | ||
| Biological process | Histone modification | The covalent alteration of one or more amino acid residues within a histone protein. | ||
| Cellular component | Cdc73/Paf1 complex | A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. |
Expression pattern of LotjaGi1g1v0189700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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