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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0189700 |
Transcript ID | LotjaGi1g1v0189700.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA polymerase-associated protein LEO1; TAIR: AT5G61150.2 leo1-like family protein; Swiss-Prot: sp|Q9FNQ0|VIP4_ARATH Protein LEO1 homolog; TrEMBL-Plants: tr|A0A0L9TFD5|A0A0L9TFD5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0189700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37215861..37222420) extracted from Lotus japonicus Gifu genome v1.2.
AAAACGATGGGGGAAGAGAAGCGGCACCAGATGATGCAGAATCTCTTCGGCGACCAATCAGAGGAAGAGGAAGAACTCGA TTCCGAACACGAATCGAACCCCCAACTCGTACGATCGATTTCTCGATCCCAATTTTTCCTGCCCTAGCGAATTTTCAATT GTTGCTCGATTTTTCGAGTTTTTCATGCTTAATTTTTCGTTGTTTTTGGATTTTCAGGATGAGGGGGAGGGAGGGGTGGG GCAGGAAGGTGAAGGAGAAGGTGAGGTGGAGGGTCAGGGAGAGGTGGATGTAATGGAGAGCGAAGGGGAGGATGTTCGTG ATGGCGGTGACCCTGGAGAGAGTGAAGGTGAGAGGGAGCAGAGTTCGCAAGAGGTGGAGGTGGAGGAGGAGGAGGAAGAG GAGGAGGTTGGGAATCAGAGGGAACAAGAGAGTGAGGGAAGGGATACAGATAGTGATGCCAAAGATGATGACTATAGTCA GCGAGTTGTTACGAGCAAGCGTAGGGATGTGGTTGAAAGTGGATCGGAGGAGAATCATTACCCTGAGAATGATGATGAGG AAGTCGACGTAGTCGCTAGAAGCCACAGGTATATTTATTATATATGCCCACCATTGTGTTTCTCAATTTTGATGCTTTTT GCTAGTGTAGTGCTTAATTTCTTTGGTCTAGGGTAACTATTTTGGTATCTTAGGGCTGTTGCAACTTTTTTCTGGTACAT CCGAAAGATAAATTGCACCCTTCAGGGATTGATCCCTACCCACATATCCCCTAGCTCTTACCACTTGAGCTATCAGTCGG GGACAGGGCTGTTGCAACTTTAAGCTGGGATGTGAAATTGTTTGATTTGATTGTACAAGTTGTGATCCCATTATCAATAG TATCCCTCATAATTTAGTTTTTGATTGAGCTCAATGGCGTAGTGTGATGTGATCCAGATAGCCGACCTCACTTAGTGGGA TACAGCTTTTGTTGTTGTTGTTGTATACAAGTTGTGAAATCAGCCTCTTGAAAATGCAAGGTAAATAGACCCGCAATGAG TCCTACTCTCATTGGACTTCGCCTTAGTGGGAGCTTGAGATCTCTAGTTGCTCTATCTTTTTATGATCAAGTTACCCTGG CTTATTGGAATACTGGTTTCTGGGTTAATGTGCTTTACTCTCATCTCAGTCCATGAAATATTCATAATTTCATTTTAGAA GTCAAAGAAGCCCTCTGTATGCTTGTAAGGCAGGGTGCGTTGCTGTCTATGCATATTTGCCTTGTGCAGAGAGTGCATTC AAAAGTGCCTTCAAATTAATTGCATCTGCGCTTGATTTCATAACTATTTTATAACATTGAATTACAAGTGCCACTATAGG GAAGTTCTATTTGGATATGGCATGGGTTTTTTTTGGGGGGGGTGGGGGGGGGGTTGGTTGTTTTTGTTTGTAAAGGAAAT GGGTCCTCTTTGCTTTCCCACCTTTAGAATTCATGATATTCACCTTTCTTCTGCTTCATCTGCCAATCTATGTTAATACT CTTGATTAATGATGCTACACTGTCTGAGTATTTGAGAAGCAAACAGACTAAACGGAAAGGCTAAGGTTCTGTTTGTACAT TTAAAATTTCATTATTTTACCAATGAATTTAAATGAGCATGTCATGATTGTTTTCATTAGCTTATCAGTGCATGTCATGT TTTACATTGTTGTACCTTAAAATAGAGGATCAACTTGAACAGAGAATTACTGATGACCTAAGCTTTAGTGTGCATAATTT TTGTAACTGTTCCATGACATTGAGACCGAGATATTATCCCTTTTTTTCTTTGAAAAAATGTAGTGCGTCTCCCAGGGATG ACAAAGATCAGACACATGATTTGCATTCTGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAG GATATGGGGTATGCAGCTCAGAAAGACATTGAACAAGATTCAAATGTGAGTGTCATGCATCAGCAGTGACATATTTCATT TATCTTTAAATTGCCCAAATTTTATGTAAGTGATTCCCTCCTTAGAGATATCCTGTGGAGGAAGAAGGAAGTTATGGAAA GAGCCTAAGACCAGAGGATATACTTGCTGATGAAGATCATCGATATGAATCAGAGGAAGAAAACACTGAGATGAAAACCA AAGAGAGGCCACTTGGCCCCCCATTGGAATTAGAGATTCCACTACAACCCCCTCCAGCTCTTCCAGAAAAGGTCTGCCTG CGTTTTGTATTATATCTTCAAATTTTGTTGAACACAGTTGCTGTCAAATACATTTAGTTACTATTCTTCTGCTTGTATAG TTTACATCTTTACAATCAAGAAGTTGGTGGGTGCAGAATGAATTTCTGGATTTTGAAATGTTTAAAGGAGCATATCTTTT AGGGCAACTTCTTGATTAATTTCCTGATGTCTTGGTTTGTGAGATGTTGCTAATGTGATAGGAATTTAACAATCTTGGAT TATGATAACAAGGTTACAATAAATACATTTTAATATGTGGTATTGCTTCAGAGGATCTTATCTACAAATGAAACACCTTT TACTGTATGATGTCCATTCTGGTAAGATATGTTGAATTTCAATATTCAATTACACTTGCTATCTCTCTTTTTGTGGCAGA TGAACATGATAAAAGTTTCCAATATTATGGGCGTTGACCCAAAACCATTTGATCCCAAGACATATGTGGAAGAGGATACC TTTGTTACTGATGAATCTGGAGCCAAGAAACGTATTCGCTTGGAGAACAATATTGTGCGCTGGAGGGATGTTAGAAATCC TGACGGCACAAAATCAGTAAGTAATTGTGTTATTGTAATTTCTTTGGCATGCTACCATGATCACCGATTGGGGTGAAGGA CATTATATTCTTATGCATGCCTTCATTTTACCTTCTTCTCATCCATGGTATCCTTTTCTATTACCTGTACAATTTTAGTT ATGTTATAAAAAAAATTATTTTGAATATCAAGCTTCATGCTCAGATGAATTCAAGATAATTAGGCCAAATGTATCTGAAG AGTTTGGAGTTTACAGTTTCTTTTGTATGTATGGCTTAAATTTTGTACATGCTTCACGCCATTTGATTTAGTTTTGATGC ATATGGATGGACAAGGTTTTTATGCATTGTATTTGGTTGAAATTTTCTTAATGAAGTTTATGATATTTTAAGGATTTGGT GAAATTTGGCCTTCATAGTTCTTTCCTTATTTGCTGAGATTCTCCCAGTGATGTTGGTGGTTTCGATTATGACTAATTGA GATATTATACTTTACCAAATGAATAGGTGAAGTTAAAATGATTGATGTTTGATTGTTTAGTGACAACTGGCAAGTCTTCT GTGGACAAGGTTATGAACCACATAAATCATTACTAGAATAGGACATGAAAGGTAGAAAAGTAAAATGTATGATTGTAACA CAGGACAGAAGATCCTTCCTCCACGTATACATTTATATTTCAAAATTTATATGTATATAATAACACCAGCAATAACAATA CCTTTGAAGTAGCGAGTAAAATTCAATTAAATTCTATTTTAAAATACATAATATGTTTGTGTTATTTGTATTTTTACCTT TCTCATGAGATGATTGAGACTTAGTTTTTTTATTTTCTGTCAAATTGGGAATTCGGGTTCTTTCATAGAAATAATGTAAG CTCTTGGTTGAGTTCTATCATCTTATCACTCAGTTTTTTTTATCTCTCACCCTTCAGCCCATGGGGGTAGCCTGGAGGCA AAGTTCAGTAGAATGGGTGTTTGCAAGTTGCAGTTTAACCTGCTGTCCTCTTTGTTAGAGCTTCTATCCAATACTAAGCC TTGAGTTTTGGAACTGAATGATTTTTCTTTTACCACGGACCTGGATGAATGACAAAAGCAGCCCAAGAAGAAGGCACTTC AAGAGATTTTACTGAGTTAGGTTCAGTCACAGCAGTCAAAGGATTATATTTTTCCTGGGCAGTTTTATAAATTTTCACAG TAGAGTAAACAGATTTTTTTTTTTGTAAGTTTTGGGTGGGTTACTTCTGGGTTTTACTGGGGTGCTATCTGGTAGATCAG GTAGAATCCTTAACTGCATGATCCTACTGATTCTACAGACTGAAATGTGGTTCCATCACAGTCCAGCAAAATGAGGTTGT TGCGGGGCTTGCCTTGGGGTCGCTCCATCATTTTAGGCACATACAATTCTATGAGATCACTGATTTTTAAACCATACCTA TGGGACTAGGTGTTGTATAATCCAGTGAGATTTGAGTATGTGAAAATACTGTAACAAAGTCCAAACTGAATAGGACAAAC CAATGAAGTTGTTTGCAATAACTAGGAATAAAATGGTCCTCTTTTTACATACATCCTTTCACTCTATAGCATACACAACA ACCAAATCGATTTCCACTAGGTGGGTTGGCTATATGAATCCTTTCACTATATTGGTTTCAAATGTTTTCGGGCCCTAAAT CATATATTGATTTGATAAAAAATAATATTGATTTGATTTAATATTATGGTGACAAAATATGCTTGTTCTCTATTTTCTTG TGCATTTGCAGAGTCGAATAATATTTTTCTTAATGAAGGTGAACTTACAAGTAGCTTAAGCATGAAATTGAATCTAGCAT GTATTGCTGCTAAAATGGTACAGAAAGATTGTCTTTTGAAAGTGTTATATGGAATCTTTTTACATTACTGAAAGAGTGTG GACAGCATGGCTGCATATGTTCTTATGCATTGTAACTGTACTTTAACCTTTTACAGCCAAAATAATTTCATTGAGCTACA TCACTAATTGTTAAGTAAAAAAATATTATTCATGATTAGGTTGAAAGCAATGCTCGCTTTGTGAGGTGGTCTGATGGAAG TGTGCAGTTATTAATTGGGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCTCATCTTTTCCTTA GACACGGAAAGGTGAATTTTGTTGCTCTCATAGCTACCTCAATGAATTATTGTTTCCTCAATGGACTGTGTGTACATCTT TACAGGGAGTCCTCCAATCACAAGGAAGACTATTGAGGAAAATGAGGTTTATGCCATCTTCCTTGACATCAAATTCTCAT CGGCTGTTGACTGCTCTTGTTGACTCAAGGCATAAGAAGGTTTACAAGGTCAAAAACTGCATTACTGACATTGATCCTGA GAGGGAAAAAGAGGAAAAAGAGAAGGTATAATCAATCATGGAAAGTAGTCATGTGCTTGTATTGCGTCTCTTGAATACCA TTATGCATTATCCAATTTCTGAATTGTTTTTACAGGCTGAAAGTCAAACAATCAGGGCTAACGTAATTCTTAACCGTAAG CGTGAAAAGTTGAGCCGGAAATATACTCCAGCAGTTGAGAGGAGACGTCAACTTTCTCCTGGATTTTTGGAGGATGCTTT GGATGAGGTATGATTTTAGGATTTGTTTCCTCTTCATGACATTGTTGTCCCTAATTGCTTAAGTGTTGCAACCTTATGTA AGCAATATGCATACTTAAACTGATCCCTTCTTCAATAATGTTCCCTTTCTTCAGGATGATGAAGCAGATTATTATGATTC TCGTCCTTCACAACGCCGCTTTGAGGAAGATTTGGAAGAGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGG TATTATTATTCAGTCTATAGAAATTTGGACATTTGTTGATTATGTTTGCATGCATCATCAATGAGGGCTATTTTCTGGAA TTAAGTCTCAGGTATCCAAAGATATCCCTCGTAAGTCATCCTTCCCACCAGCTAAATCCTCCAGGCACCCAATGAGTTAT CCAGATGACGAGAGAGAGGAGTCTGAGTACGAAACTGATGACGAGGAAGACGAGAGGCCTCTTCCCCATAAGAGGGACGA GGATACTGAGCCAGAGTATGAGGATGAGGACGAAGAACCCTATGAAGAAAGGGCACAAGTTAATGATGCATCAGATGAGG AGGAAGAAGAGGTACTGAACTACTGATTATGCTATGAAAAAATACCTGTCTCTAACTTTGGCCATAGATCAATAGATTAT TTCTAATAAATTTCTGAATGCTTATTTACGTGTTATTGGCCTTTGTTTGCAAGCTTGAGATTCTTCAACAGAGATTTGGA TACTTTGTGCGTCTTTGACTCTTAATTTTTATAGGAACTTTGAAGGAAAATACTAGTTTGGATTAGTTAATCATTGATGT TGCATCAATGTGTTGAGTATTGTGTTTTTTCTTTTTTCTATTTTGGGTTTTCTTGTGGTGATTTCTGCACTGAGTAGTTG TAGATGTCTGTTGGGTTGCAACCTATAGACCTGCGGTGATTGTAGAATATAAAGGTTGAAAATAAGGATGATAATATGAT CAATTTCTGTGGCTTATTTGGTATTTTCTTGCAGGAGCCAAAGCAAAAGAGTAAAGGCAGTGTCAAAAGGAAGGGATTTG AATCTGATGAGGACTCTCCTCCAAGGAAAACAACAGCCCATCGGCGTATGGCAGTTGTATATGACAGTGATGATGAATGA
CDS sequence (LotjaGi1g1v0189700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGAGAAGCGGCACCAGATGATGCAGAATCTCTTCGGCGACCAATCAGAGGAAGAGGAAGAACTCGATTCCGA ACACGAATCGAACCCCCAACTCGATGAGGGGGAGGGAGGGGTGGGGCAGGAAGGTGAAGGAGAAGGTGAGGTGGAGGGTC AGGGAGAGGTGGATGTAATGGAGAGCGAAGGGGAGGATGTTCGTGATGGCGGTGACCCTGGAGAGAGTGAAGGTGAGAGG GAGCAGAGTTCGCAAGAGGTGGAGGTGGAGGAGGAGGAGGAAGAGGAGGAGGTTGGGAATCAGAGGGAACAAGAGAGTGA GGGAAGGGATACAGATAGTGATGCCAAAGATGATGACTATAGTCAGCGAGTTGTTACGAGCAAGCGTAGGGATGTGGTTG AAAGTGGATCGGAGGAGAATCATTACCCTGAGAATGATGATGAGGAAGTCGACGTAGTCGCTAGAAGCCACAGTGCGTCT CCCAGGGATGACAAAGATCAGACACATGATTTGCATTCTGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGA TGAAGAGGAGGATATGGGGTATGCAGCTCAGAAAGACATTGAACAAGATTCAAATAGATATCCTGTGGAGGAAGAAGGAA GTTATGGAAAGAGCCTAAGACCAGAGGATATACTTGCTGATGAAGATCATCGATATGAATCAGAGGAAGAAAACACTGAG ATGAAAACCAAAGAGAGGCCACTTGGCCCCCCATTGGAATTAGAGATTCCACTACAACCCCCTCCAGCTCTTCCAGAAAA GATGAACATGATAAAAGTTTCCAATATTATGGGCGTTGACCCAAAACCATTTGATCCCAAGACATATGTGGAAGAGGATA CCTTTGTTACTGATGAATCTGGAGCCAAGAAACGTATTCGCTTGGAGAACAATATTGTGCGCTGGAGGGATGTTAGAAAT CCTGACGGCACAAAATCAGTTGAAAGCAATGCTCGCTTTGTGAGGTGGTCTGATGGAAGTGTGCAGTTATTAATTGGGAA TGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCTCATCTTTTCCTTAGACACGGAAAGGGAGTCCTCC AATCACAAGGAAGACTATTGAGGAAAATGAGGTTTATGCCATCTTCCTTGACATCAAATTCTCATCGGCTGTTGACTGCT CTTGTTGACTCAAGGCATAAGAAGGTTTACAAGGTCAAAAACTGCATTACTGACATTGATCCTGAGAGGGAAAAAGAGGA AAAAGAGAAGGCTGAAAGTCAAACAATCAGGGCTAACGTAATTCTTAACCGTAAGCGTGAAAAGTTGAGCCGGAAATATA CTCCAGCAGTTGAGAGGAGACGTCAACTTTCTCCTGGATTTTTGGAGGATGCTTTGGATGAGGATGATGAAGCAGATTAT TATGATTCTCGTCCTTCACAACGCCGCTTTGAGGAAGATTTGGAAGAGGAAGCCCGAGCAGAGAAACGAATTATGAATGC TAAAAAGTCTCAGGTATCCAAAGATATCCCTCGTAAGTCATCCTTCCCACCAGCTAAATCCTCCAGGCACCCAATGAGTT ATCCAGATGACGAGAGAGAGGAGTCTGAGTACGAAACTGATGACGAGGAAGACGAGAGGCCTCTTCCCCATAAGAGGGAC GAGGATACTGAGCCAGAGTATGAGGATGAGGACGAAGAACCCTATGAAGAAAGGGCACAAGTTAATGATGCATCAGATGA GGAGGAAGAAGAGGAGCCAAAGCAAAAGAGTAAAGGCAGTGTCAAAAGGAAGGGATTTGAATCTGATGAGGACTCTCCTC CAAGGAAAACAACAGCCCATCGGCGTATGGCAGTTGTATATGACAGTGATGATGAATGA
Protein sequence (LotjaGi1g1v0189700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEKRHQMMQNLFGDQSEEEEELDSEHESNPQLDEGEGGVGQEGEGEGEVEGQGEVDVMESEGEDVRDGGDPGESEGER EQSSQEVEVEEEEEEEEVGNQREQESEGRDTDSDAKDDDYSQRVVTSKRRDVVESGSEENHYPENDDEEVDVVARSHSAS PRDDKDQTHDLHSAPEIRDVFGDFDDDEEEDMGYAAQKDIEQDSNRYPVEEEGSYGKSLRPEDILADEDHRYESEEENTE MKTKERPLGPPLELEIPLQPPPALPEKMNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRN PDGTKSVESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMPSSLTSNSHRLLTA LVDSRHKKVYKVKNCITDIDPEREKEEKEKAESQTIRANVILNRKREKLSRKYTPAVERRRQLSPGFLEDALDEDDEADY YDSRPSQRRFEEDLEEEARAEKRIMNAKKSQVSKDIPRKSSFPPAKSSRHPMSYPDDEREESEYETDDEEDERPLPHKRD EDTEPEYEDEDEEPYEERAQVNDASDEEEEEEPKQKSKGSVKRKGFESDEDSPPRKTTAHRRMAVVYDSDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 252 | 252 | - | – | |
PANTHER | 3 | 612 | 610 | 7.8E-146 | ||
MobiDBLite | 41 | 63 | 23 | - | – | |
MobiDBLite | 64 | 83 | 20 | - | – | |
Coils | 84 | 104 | 21 | - | – | |
MobiDBLite | 84 | 101 | 18 | - | – | |
MobiDBLite | 102 | 140 | 39 | - | – | |
MobiDBLite | 147 | 180 | 34 | - | – | |
MobiDBLite | 203 | 249 | 47 | - | – | |
Pfam | 270 | 429 | 160 | 9.6E-47 | ||
MobiDBLite | 461 | 632 | 172 | - | – | |
MobiDBLite | 481 | 515 | 35 | - | – | |
Coils | 491 | 511 | 21 | - | – | |
MobiDBLite | 564 | 590 | 27 | - | – | |
MobiDBLite | 591 | 632 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Transcription elongation from RNA polymerase II promoter | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. | ||
Biological process | Histone modification | The covalent alteration of one or more amino acid residues within a histone protein. | ||
Cellular component | Cdc73/Paf1 complex | A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. |
Expression pattern of LotjaGi1g1v0189700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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