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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0191000 |
| Transcript ID | LotjaGi1g1v0191000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNAP25 like protein SNAP33; TAIR: AT5G61210.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 33; Swiss-Prot: sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33; TrEMBL-Plants: tr|I3SGH9|I3SGH9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0191000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37653817..37656830) extracted from Lotus japonicus Gifu genome v1.2.
TAATAAGGGGAGAGAGTGAGTCAAATTACCAAAAGTCTATGGCGAATTTAAATTTTCTCTTGTTCTGGCTGCGCATGTTG CTGTGACTTTTCTTAACGCGATTTTGTGCATTTCCATTTCCATTTCCATTTCCAAAGTTGAAACTATCAAACTTCAAACC AACCAAGCCTCTTAAATTTGTGTCCTTTCTCTTCTTCTTCCTTCAATTCAATACATTCATAATCACACCAGGTACTATCT CTCTTCCTTGTTATCATCTTCATCTAATTCTCAGCTTTTCACTTCAAATTTCACTTTTTTTCATCTGGGTTTTTGCTATC CTTGTTGATCTCTTGTTATCTATATTTAACTGTATAAATTTTGTCTCTTTTGAGTTGGTTTTGTATGTTGACCACTTCAA AATTCAATTTTGATGAAAAGGGGTTTGCTTTTTTGATAAGAACTTTGATTTGATATCTGGGTTTTTTGCCAACAGTGATT GAGTATCTTGATTCCTTGGCTTGTCTTTTCAGGTGGGAGTATACACAAGATCATTGTTTTTTTAAGGTAGAGACTAGAGA GAGAGAGAGAGAGAGAGATAATGGTTGGTTCAAAGAAATCACCTTTGAAATATGCTAAGCCTAGCTCAGTTGACCCTGTC TCTAAGCATAAAAACCCCTTTGATTCTGATGAAGAGACAAAAGATAACAAAAAACATGTTTCTGGACATGGTCTAGTTTC AAGAGAGAGTAACACCAACCCCTTTGATGATGATTATGCCAGTGGCCACTCTTCATCATCTTCTTATGCTGTTTCATCAG CCAATAATCCAAACAGGTACAAGAATGGTTTCCGCGATTCTGGGGGGTTGGAGAGTCAATCAGTGCAGGAGTTGGAGAAC TATGCCGTGTACAAATCTGAAGAGACTACAAAGTCAGTAAACAACTGTTTGAAGATAGCTGAGGAAATAAGAGAGGATGC TACCAATACATTAGTGATGCTGCATCAGCAAGGCGAGCAGATTACAAGGAGTCACGATGTTGCTGCTGATATTGATCATG ATCTAAGTCGGGTATAGATCTTGTTATTCCCGTGTTAGTTATGTTCCATTTGGATACACATCAAAGAGCGCTTATTGAAG CTTCTCTATTAAAGAAAGCACTAGATAAGCTCCAATAAGTGATTTTTGGTCTTATCCAAACGAGCTTTTAGTGCTATTGT GTCAGGGTCTCCTTTATGGGCATTTTCTTCATGCTGTTTTCAATTGATATTGTGGACCAAATTTTAACTGTCTATTGCTG TTTACAGGGAGAAAAGCTTTTGGGAAGTCTTGGAGGCATGTTCTCCAGAACTTGGAAACCAAAGAAGACAGGCACAATAA CTGGCCCTGTTATTTTTGGAGGTTAGTATTTTTTTCTCTCTATGACCTTTTTGATTTTAATAGCTTTGGGATGCATGATA ATGATATTATGTGCATCATGATAACAGCTGATCCAGTCAGAAGAAATGGCAACCACTCGGAGCAGAGAGAGAAGTTAGGA TTGACTTCTTCAGCTCCTAAAGGGCAGTCAAAGCCGCGGAAATCACTTTCTGAGCCAACAAATGCATTTGAAAAAGTTGA GGTTTGTATCAACTTGATGAAGATTAATTGTTGTCTGAAGTCATGAACATAACAATGATTCTGTCTCTTAATGCTTTAAC ATCTGATATATATCTGAATAAATGCATGTTTGGAAACTCGTTTGGAGCCAAAATCATGGTAGATTGAAACAAAAGCTGAG GGAAGTTGCTTCTATCGACCCTAAATTTTGGCTTCATTGTGGTTTTAAAACGAGTTTCCAAACATGCACAAAGCACCAAG TAGTTTTCTACTATTGTTCGGGCTCTAATGAGTAATGGCCATTATAATTTTGCAACTCTCCTCATATTTCTCTCATTAAC CACCTATACTTTCGACTGACCATTAGCCTGACCTGGATACTGTAATTATAATTTGTGATACTCTCCTTTGCATTTGATTG ATATACTTACTATTGTTAAATTTAGCTACTGAACAGAATGTTCTGAAACAGGTTGAAAAAGGGAAGCAAGATGATGCATT GTCAGATATTAGTGATCTCTTAGGAGAATTGAAGGGCATGGCCATGGACATGGGATCTGAAATTGACAGGCAAGTTGATC AGATTCTGTGTTTTCGCCAATTTACCTTCGTTAGTTTAACTAACTGATATTAATGATTGCTCAGGATGTACTAGTTGTGT AATTAAGTAGAAGTATTTCACTTTATTAAGGATATCATTATTTATAGTTGCTTTTGGCATCGTTGCAGGCATATCAACGC CATGGATGGTTTTGACAAAGATGTTGAGAAGCTGAGTATCCGTATGAATGGTGCTAATCAACGCGGTCGTCATTTACTTG GAAAAGCACACAGATCATGAGATTTGATTCCAACTTTTGCTATTTCATTCCTTCCCCCTGCACACACATGCTTGTTTATT AAATTGAGGGGGCATTGAGCTTTCTGGAAAACTAGCTTCAGATATTATAATGTACCAGCTTGTGAATTTTGTTTCTGAAA TATAGTATTGATTTGAGATTGTTTATGAGCAAATTATCAGAATGCATGAGATATCGGGTTATGGACCACAATTACAACAA CGTAGGAATAGCGAGCAGAAAAATTAGAAACTTATGTGGAGGCGTGAAGATTTTATGAAAGCATGTACATATGGTAAAAA GCAATTTGATTCCTTGATGTTTTTAAAGCACTCTATTTTGGTCCTTTAAAAATTAACATGGTCTTGTTTTAGTTCTCAAT TTTTGTCTTCTTGGTTCTAATATGAATTGATATGTTCGACATTTTACAGGACAAGTGCTGTAGCATAAATGTTAGTACTT ATACCACATTTTTATATGGATTAATTTACCATTTTGTTATCTTATAAGTCTATCTTGTTCAGTTAACAAATTATCACATC ATTCTTTTAATTGACTTGTGAATCCTTGAACAATAATCATTTAAACTATGTTGA
CDS sequence (LotjaGi1g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTTCAAAGAAATCACCTTTGAAATATGCTAAGCCTAGCTCAGTTGACCCTGTCTCTAAGCATAAAAACCCCTT TGATTCTGATGAAGAGACAAAAGATAACAAAAAACATGTTTCTGGACATGGTCTAGTTTCAAGAGAGAGTAACACCAACC CCTTTGATGATGATTATGCCAGTGGCCACTCTTCATCATCTTCTTATGCTGTTTCATCAGCCAATAATCCAAACAGGTAC AAGAATGGTTTCCGCGATTCTGGGGGGTTGGAGAGTCAATCAGTGCAGGAGTTGGAGAACTATGCCGTGTACAAATCTGA AGAGACTACAAAGTCAGTAAACAACTGTTTGAAGATAGCTGAGGAAATAAGAGAGGATGCTACCAATACATTAGTGATGC TGCATCAGCAAGGCGAGCAGATTACAAGGAGTCACGATGTTGCTGCTGATATTGATCATGATCTAAGTCGGGGAGAAAAG CTTTTGGGAAGTCTTGGAGGCATGTTCTCCAGAACTTGGAAACCAAAGAAGACAGGCACAATAACTGGCCCTGTTATTTT TGGAGCTGATCCAGTCAGAAGAAATGGCAACCACTCGGAGCAGAGAGAGAAGTTAGGATTGACTTCTTCAGCTCCTAAAG GGCAGTCAAAGCCGCGGAAATCACTTTCTGAGCCAACAAATGCATTTGAAAAAGTTGAGGTTGAAAAAGGGAAGCAAGAT GATGCATTGTCAGATATTAGTGATCTCTTAGGAGAATTGAAGGGCATGGCCATGGACATGGGATCTGAAATTGACAGGCA AGTTGATCAGATTCTGTGTTTTCGCCAATTTACCTTCGTTAGTTTAACTAACTGA
Protein sequence (LotjaGi1g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGSKKSPLKYAKPSSVDPVSKHKNPFDSDEETKDNKKHVSGHGLVSRESNTNPFDDDYASGHSSSSSYAVSSANNPNRY KNGFRDSGGLESQSVQELENYAVYKSEETTKSVNNCLKIAEEIREDATNTLVMLHQQGEQITRSHDVAADIDHDLSRGEK LLGSLGGMFSRTWKPKKTGTITGPVIFGADPVRRNGNHSEQREKLGLTSSAPKGQSKPRKSLSEPTNAFEKVEVEKGKQD DALSDISDLLGELKGMAMDMGSEIDRQVDQILCFRQFTFVSLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 5.3E-143 | – | |
| PANTHER | 1 | 274 | 274 | 5.3E-143 | – | |
| MobiDBLite | 1 | 91 | 91 | - | – | |
| MobiDBLite | 23 | 44 | 22 | - | – | |
| MobiDBLite | 45 | 91 | 47 | - | – | |
| Gene3D | 89 | 167 | 79 | 1.6E-22 | – | |
| SUPERFAMILY | 93 | 163 | 71 | 3.14E-19 | – | |
| CDD | 100 | 164 | 65 | 5.20746E-23 | – | |
| MobiDBLite | 184 | 227 | 44 | - | – | |
| MobiDBLite | 202 | 223 | 22 | - | – | |
| Gene3D | 230 | 273 | 44 | 1.5E-10 | – | |
| ProSiteProfiles | 233 | 271 | 39 | 9.245 | ||
| SUPERFAMILY | 235 | 271 | 37 | 6.98E-7 | – | |
| CDD | 238 | 271 | 34 | 2.97357E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0191000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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