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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0191000 |
| Transcript ID | LotjaGi1g1v0191000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNAP25 like protein SNAP33; TAIR: AT5G61210.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 33; Swiss-Prot: sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33; TrEMBL-Plants: tr|I3SGH9|I3SGH9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0191000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37653825..37656661) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAGAGTGAGTCAAATTACCAAAAGTCTATGGCGAATTTAAATTTTCTCTTGTTCTGGCTGCGCATGTTGCTGTGACT TTTCTTAACGCGATTTTGTGCATTTCCATTTCCATTTCCATTTCCAAAGTTGAAACTATCAAACTTCAAACCAACCAAGC CTCTTAAATTTGTGTCCTTTCTCTTCTTCTTCCTTCAATTCAATACATTCATAATCACACCAGGTACTATCTCTCTTCCT TGTTATCATCTTCATCTAATTCTCAGCTTTTCACTTCAAATTTCACTTTTTTTCATCTGGGTTTTTGCTATCCTTGTTGA TCTCTTGTTATCTATATTTAACTGTATAAATTTTGTCTCTTTTGAGTTGGTTTTGTATGTTGACCACTTCAAAATTCAAT TTTGATGAAAAGGGGTTTGCTTTTTTGATAAGAACTTTGATTTGATATCTGGGTTTTTTGCCAACAGTGATTGAGTATCT TGATTCCTTGGCTTGTCTTTTCAGGTGGGAGTATACACAAGATCATTGTTTTTTTAAGGTAGAGACTAGAGAGAGAGAGA GAGAGAGAGATAATGGTTGGTTCAAAGAAATCACCTTTGAAATATGCTAAGCCTAGCTCAGTTGACCCTGTCTCTAAGCA TAAAAACCCCTTTGATTCTGATGAAGAGACAAAAGATAACAAAAAACATGTTTCTGGACATGGTCTAGTTTCAAGAGAGA GTAACACCAACCCCTTTGATGATGATTATGCCAGTGGCCACTCTTCATCATCTTCTTATGCTGTTTCATCAGCCAATAAT CCAAACAGGTACAAGAATGGTTTCCGCGATTCTGGGGGGTTGGAGAGTCAATCAGTGCAGGAGTTGGAGAACTATGCCGT GTACAAATCTGAAGAGACTACAAAGTCAGTAAACAACTGTTTGAAGATAGCTGAGGAAATAAGAGAGGATGCTACCAATA CATTAGTGATGCTGCATCAGCAAGGCGAGCAGATTACAAGGAGTCACGATGTTGCTGCTGATATTGATCATGATCTAAGT CGGGTATAGATCTTGTTATTCCCGTGTTAGTTATGTTCCATTTGGATACACATCAAAGAGCGCTTATTGAAGCTTCTCTA TTAAAGAAAGCACTAGATAAGCTCCAATAAGTGATTTTTGGTCTTATCCAAACGAGCTTTTAGTGCTATTGTGTCAGGGT CTCCTTTATGGGCATTTTCTTCATGCTGTTTTCAATTGATATTGTGGACCAAATTTTAACTGTCTATTGCTGTTTACAGG GAGAAAAGCTTTTGGGAAGTCTTGGAGGCATGTTCTCCAGAACTTGGAAACCAAAGAAGACAGGCACAATAACTGGCCCT GTTATTTTTGGAGGTTAGTATTTTTTTCTCTCTATGACCTTTTTGATTTTAATAGCTTTGGGATGCATGATAATGATATT ATGTGCATCATGATAACAGCTGATCCAGTCAGAAGAAATGGCAACCACTCGGAGCAGAGAGAGAAGTTAGGATTGACTTC TTCAGCTCCTAAAGGGCAGTCAAAGCCGCGGAAATCACTTTCTGAGCCAACAAATGCATTTGAAAAAGTTGAGGTTTGTA TCAACTTGATGAAGATTAATTGTTGTCTGAAGTCATGAACATAACAATGATTCTGTCTCTTAATGCTTTAACATCTGATA TATATCTGAATAAATGCATGTTTGGAAACTCGTTTGGAGCCAAAATCATGGTAGATTGAAACAAAAGCTGAGGGAAGTTG CTTCTATCGACCCTAAATTTTGGCTTCATTGTGGTTTTAAAACGAGTTTCCAAACATGCACAAAGCACCAAGTAGTTTTC TACTATTGTTCGGGCTCTAATGAGTAATGGCCATTATAATTTTGCAACTCTCCTCATATTTCTCTCATTAACCACCTATA CTTTCGACTGACCATTAGCCTGACCTGGATACTGTAATTATAATTTGTGATACTCTCCTTTGCATTTGATTGATATACTT ACTATTGTTAAATTTAGCTACTGAACAGAATGTTCTGAAACAGGTTGAAAAAGGGAAGCAAGATGATGCATTGTCAGATA TTAGTGATCTCTTAGGAGAATTGAAGGGCATGGCCATGGACATGGGATCTGAAATTGACAGGCAAGTTGATCAGATTCTG TGTTTTCGCCAATTTACCTTCGTTAGTTTAACTAACTGATATTAATGATTGCTCAGGATGTACTAGTTGTGTAATTAAGT AGAAGTATTTCACTTTATTAAGGATATCATTATTTATAGTTGCTTTTGGCATCGTTGCAGGCATATCAACGCCATGGATG GTTTTGACAAAGATGTTGAGAAGCTGAGTATCCGTATGAATGGTGCTAATCAACGCGGTCGTCATTTACTTGGAAAAGCA CACAGATCATGAGATTTGATTCCAACTTTTGCTATTTCATTCCTTCCCCCTGCACACACATGCTTGTTTATTAAATTGAG GGGGCATTGAGCTTTCTGGAAAACTAGCTTCAGATATTATAATGTACCAGCTTGTGAATTTTGTTTCTGAAATATAGTAT TGATTTGAGATTGTTTATGAGCAAATTATCAGAATGCATGAGATATCGGGTTATGGACCACAATTACAACAACGTAGGAA TAGCGAGCAGAAAAATTAGAAACTTATGTGGAGGCGTGAAGATTTTATGAAAGCATGTACATATGGTAAAAAGCAATTTG ATTCCTTGATGTTTTTAAAGCACTCTATTTTGGTCCTTTAAAAATTAACATGGTCTTGTTTTAGTTCTCAATTTTTGTCT TCTTGGTTCTAATATGAATTGATATGTTCGACATTTT
CDS sequence (LotjaGi1g1v0191000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTTCAAAGAAATCACCTTTGAAATATGCTAAGCCTAGCTCAGTTGACCCTGTCTCTAAGCATAAAAACCCCTT TGATTCTGATGAAGAGACAAAAGATAACAAAAAACATGTTTCTGGACATGGTCTAGTTTCAAGAGAGAGTAACACCAACC CCTTTGATGATGATTATGCCAGTGGCCACTCTTCATCATCTTCTTATGCTGTTTCATCAGCCAATAATCCAAACAGGTAC AAGAATGGTTTCCGCGATTCTGGGGGGTTGGAGAGTCAATCAGTGCAGGAGTTGGAGAACTATGCCGTGTACAAATCTGA AGAGACTACAAAGTCAGTAAACAACTGTTTGAAGATAGCTGAGGAAATAAGAGAGGATGCTACCAATACATTAGTGATGC TGCATCAGCAAGGCGAGCAGATTACAAGGAGTCACGATGTTGCTGCTGATATTGATCATGATCTAAGTCGGGGAGAAAAG CTTTTGGGAAGTCTTGGAGGCATGTTCTCCAGAACTTGGAAACCAAAGAAGACAGGCACAATAACTGGCCCTGTTATTTT TGGAGCTGATCCAGTCAGAAGAAATGGCAACCACTCGGAGCAGAGAGAGAAGTTAGGATTGACTTCTTCAGCTCCTAAAG GGCAGTCAAAGCCGCGGAAATCACTTTCTGAGCCAACAAATGCATTTGAAAAAGTTGAGGTTGAAAAAGGGAAGCAAGAT GATGCATTGTCAGATATTAGTGATCTCTTAGGAGAATTGAAGGGCATGGCCATGGACATGGGATCTGAAATTGACAGGCA TATCAACGCCATGGATGGTTTTGACAAAGATGTTGAGAAGCTGAGTATCCGTATGAATGGTGCTAATCAACGCGGTCGTC ATTTACTTGGAAAAGCACACAGATCATGA
Protein sequence (LotjaGi1g1v0191000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGSKKSPLKYAKPSSVDPVSKHKNPFDSDEETKDNKKHVSGHGLVSRESNTNPFDDDYASGHSSSSSYAVSSANNPNRY KNGFRDSGGLESQSVQELENYAVYKSEETTKSVNNCLKIAEEIREDATNTLVMLHQQGEQITRSHDVAADIDHDLSRGEK LLGSLGGMFSRTWKPKKTGTITGPVIFGADPVRRNGNHSEQREKLGLTSSAPKGQSKPRKSLSEPTNAFEKVEVEKGKQD DALSDISDLLGELKGMAMDMGSEIDRHINAMDGFDKDVEKLSIRMNGANQRGRHLLGKAHRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 4.3E-158 | – | |
| MobiDBLite | 1 | 91 | 91 | - | – | |
| PANTHER | 1 | 298 | 298 | 4.3E-158 | – | |
| MobiDBLite | 23 | 44 | 22 | - | – | |
| MobiDBLite | 45 | 91 | 47 | - | – | |
| Gene3D | 89 | 167 | 79 | 1.7E-22 | – | |
| SUPERFAMILY | 93 | 163 | 71 | 6.11E-19 | – | |
| SMART | 98 | 165 | 68 | 0.74 | ||
| CDD | 100 | 164 | 65 | 1.46471E-22 | – | |
| MobiDBLite | 184 | 227 | 44 | - | – | |
| MobiDBLite | 202 | 223 | 22 | - | – | |
| SMART | 228 | 295 | 68 | 0.32 | ||
| Gene3D | 230 | 297 | 68 | 7.2E-17 | – | |
| ProSiteProfiles | 233 | 295 | 63 | 12.396 | ||
| SUPERFAMILY | 235 | 295 | 61 | 1.78E-11 | – | |
| CDD | 238 | 294 | 57 | 3.78349E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0191000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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