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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0191300 |
| Transcript ID | LotjaGi1g1v0191300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02550.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q98TW1|NCOA2_DANRE Nuclear receptor coactivator 2; TrEMBL-Plants: tr|K7LCA7|K7LCA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0191300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:37675934..37677037) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGGAAAATGGCGGAAGCTAGTAATGAGGATAAGAAAGATGATAGCAGAGCTTACTTTACTTGGAACTTGGAGATG GACCGTGCACTTGCTGATATACTTAGAGATCAAAGAAGCATGGGAAACAAGAGTGGTGGTGCATGGAAAGCAGTGGCATA TAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGCAACTTATTGGAGAGAATGTTAAAAACCGCATCAAGCTGT GGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTTTTGATTGGGATGGAACCAAATATATGATTTCT GTTACAAATGAAGATGCATGGAATGAGTATGTCAAGGTAATCCTTTTTAATGTTATTACTATTTAATTAAATTAGTGTTT GTGTTAGTATTAATATGCTGCCTATTTTCTTTGTAGTCACATAATGATGCTAAGAGGTTTAGATTTAAGGTGATTGCTAA TTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAATTGGAGCGGAGACATCCTTGGATGCAGATGACA TCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGTGGATATTGATGCTGATGAACAAAGCTCTACAACAAGGAAA AGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAGAAGAATGGGATAATTACTTCAATGAATAAAGTGGCTGA GTCATTGAGTGAATTTGTGCAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGATGTGATGGATGAGC TAAAGAACATTCCGGACCTTAATGCCACTCAATGGATAAAGGCAGTGGATTGGCTTTCAGAAAATCCAAATAAGTTGGAG ATTTTGAAAGCTCTTCCCATGGAGAGAAAGAAAGATTACATCATAGCTTTTATGCACTGATTCGTGATTTGCTATAGTTT ATGGACTCATTTGTAGTGTTTCCAACTTTTCATTATGCCACTGTTGAGACTTTGTTTTATTTATTTTTCATTTGGATTGA TGTTAGCACTTGTTATAAACACAATTTGAAATTTAAATAATAGAAAATGTGATATCTCGATGAA
CDS sequence (LotjaGi1g1v0191300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGCTAGTAATGAGGATAAGAAAGATGATAGCAGAGCTTACTTTACTTGGAACTTGGAGATGGACCGTGCACT TGCTGATATACTTAGAGATCAAAGAAGCATGGGAAACAAGAGTGGTGGTGCATGGAAAGCAGTGGCATATAACACTGCGG CTCAAATGTTGTCTTCACGCTTCAATTTGCAACTTATTGGAGAGAATGTTAAAAACCGCATCAAGCTGTGGAGATCATGG TATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTTTTGATTGGGATGGAACCAAATATATGATTTCTGTTACAAATGA AGATGCATGGAATGAGTATGTCAAGTCACATAATGATGCTAAGAGGTTTAGATTTAAGGTGATTGCTAATTGGGATGACA TTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAATTGGAGCGGAGACATCCTTGGATGCAGATGACATCATGAGCAAA GAAGCAAATGAGGATGGAGCTTATATTGTGGATATTGATGCTGATGAACAAAGCTCTACAACAAGGAAAAGCAAACAACC AATGGAATTCAAAAAGGGAAAAAGTGGAGAGAAGAATGGGATAATTACTTCAATGAATAAAGTGGCTGAGTCATTGAGTG AATTTGTGCAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGATGTGATGGATGAGCTAAAGAACATT CCGGACCTTAATGCCACTCAATGGATAAAGGCAGTGGATTGGCTTTCAGAAAATCCAAATAAGTTGGAGATTTTGAAAGC TCTTCCCATGGAGAGAAAGAAAGATTACATCATAGCTTTTATGCACTGA
Protein sequence (LotjaGi1g1v0191300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEASNEDKKDDSRAYFTWNLEMDRALADILRDQRSMGNKSGGAWKAVAYNTAAQMLSSRFNLQLIGENVKNRIKLWRSW YGIVSDILSQSGFDWDGTKYMISVTNEDAWNEYVKSHNDAKRFRFKVIANWDDIVDLCAKDRATGIGAETSLDADDIMSK EANEDGAYIVDIDADEQSSTTRKSKQPMEFKKGKSGEKNGIITSMNKVAESLSEFVQATRKGVKNVQEVVHDVMDELKNI PDLNATQWIKAVDWLSENPNKLEILKALPMERKKDYIIAFMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 18 | 113 | 96 | 6.4E-15 | ||
| PANTHER | 23 | 277 | 255 | 1.3E-102 | – | |
| PANTHER | 23 | 277 | 255 | 1.3E-102 | – | |
| MobiDBLite | 176 | 196 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0191300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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