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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0192300 |
| Transcript ID | LotjaGi1g1v0192300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remorin family protein; TAIR: AT5G61280.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|G7IWD6|G7IWD6_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi1g1v0192300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38014576..38016537) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGAACTATTCTCAGTTCATCTTCATTCACATCATCAGAATCAAACTTGGAAATTAGAAGTTTCAACTTTCAGTACAT ATTTCATTTTCACAAAAATGGAAAATAGGCTCTCCCAAAAAAGGTACATAGTTTCAAAGCTGAAAATATGTGATGCCATT GAAATTGGTCTTATTTGAGATTTTCTGCATGTCATAGTATATTTTTGGTAACTACTGATAAGAAAAATTGTTGTTTTATA CCAGAGTGTCATTTTCTGATCCACAATCAATGAAATACACACGAGATGATGAGCATGTAACTGCAGTTGCAGCTGCTGCA TTTGCCATTCATTCATTAGAGGAAGCAAGGTTGCTTAATCTGCAGAAAAATCTGCAAAAAATGAGAGAGGGTCCCAAAAT TTCAAAGAATCTTACTGTGAGAGGAGAAGAGGAGAACACATCAAGGAAGCTGAGTAATGGTTAGTGTGTTTGGATCAACT TGTTTTTTCTCAGAATCAATTCTAGCCCTCTAAAGCTACTTACCGAAACTAATCAATTGTAGAAGGATTCTCAAACTCAT GCTATTGCTCATTGCTTAAGTTTTAGTAACCAACTATATATTATGAAGAAATGTTATGTTGTGTGTTGTGCCAGGGGAAA CTTCAATGAAAAGGTCATTTGGAGAAGACCCTCCAAGGAAAACAGAAAGTGCTATTCCTGAAAGACGTCCAAGTAGTATA TCCTCAGCAGCAGGGTATCAAAGGAAGAAAGGGATTCCAATACAAAACAAAAATGACATGGCAAAAGCAGAAGCTTGGGA AAAGGCCAAGATAGAAAGGATTCAAAAGCGGTAACCGAAATTCTAGTCTTCACACCTTTAGTGATTTTGTTTAAGATTTT CTTGTTAACAAATTACTTTCCTATTAATAAATCAAATCAATTACTGCATGTTTGAAAATCATTTCTGCAATTGATTCAAA AGTTAGAATTAGTTCTAGGGAAAATATTTTGTAAGTAGCTTTTGGATTTCAGAATTGATTTAAAGAAATGAGTATATGAT CCAAACATGCTATAATGTTTTTAAATAGTTTGGAGAAGCTTTTGAAAAAATTTAGAATCTAAAACATTTGGACACCGGTT GACACTAGTGCTAAAAGAAAATGGCACTTCCAGAAAAAGAAAAAGAAAAGTAAATGAAGCTTTTCTTCTGAATTATATAA AAGTTCATTCATGTTCCACATAATTGGTATCCGAACACAAATTGAAGTTATAATGATTAACTTTTGATAAGAAGAACTTA TACAGATGAGATTGTTATTGGAGAAAGATCAATTTTTAAACAAGCTTAAAATTATTTCTTTGTAATAATTGTTCAAGAAA AGTTACTCTTGTCATTGCAAGAAAAATTCAGGTATGGGAAGTTAAAGTCCAATATCCTTTCTTGGGAGAGTGAGAAAAAG ATTGAAGCCAAAGTACACATGGAAAAGAAGAAGGTTTTCCTCTTAATTCTTGGATTTCAATTTCTAAAATTCATAAACAT GTTCTCATTACTGGTTGAACTATACAGAAGGAATTGGAGCACAGAAGAGAAATGGAAATACTACATTACAAGAATAAGAT AGCAAGGATAGATATGGTAAAAAAAGGAGCAATAACACAGTTGGAAGACCACAGAAGAAAAGAAGAGTCCAAGGTCAGAG AAAAAGCAAACAAAGTCAGAAAAACAGGAAAGGCCCCCATCAAATGTTTCTGCTTCAAATCTTTCTAGGATCAAGTCATG GAGCTGGAACCCAAGAATTAGAAATGGTTCAAAAAACTTCCACCCCAACCAAGCTTCTGAAATCTAATGATAGCATACAT AACTAAGATTAATTGTACATAGATGATGCGATCCTACCTTGCTGCCCAAATTGTTCATAATGTATTATAATTGTTCAAAT TTCATATTTAATGTCATCATGGTAACAAACTCAATGTTCTGG
CDS sequence (LotjaGi1g1v0192300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATACACACGAGATGATGAGCATGTAACTGCAGTTGCAGCTGCTGCATTTGCCATTCATTCATTAGAGGAAGCAAG GTTGCTTAATCTGCAGAAAAATCTGCAAAAAATGAGAGAGGGTCCCAAAATTTCAAAGAATCTTACTGTGAGAGGAGAAG AGGAGAACACATCAAGGAAGCTGAGTAATGGGGAAACTTCAATGAAAAGGTCATTTGGAGAAGACCCTCCAAGGAAAACA GAAAGTGCTATTCCTGAAAGACGTCCAAGTAGTATATCCTCAGCAGCAGGGTATCAAAGGAAGAAAGGGATTCCAATACA AAACAAAAATGACATGGCAAAAGCAGAAGCTTGGGAAAAGGCCAAGATAGAAAGGATTCAAAAGCGGTATGGGAAGTTAA AGTCCAATATCCTTTCTTGGGAGAGTGAGAAAAAGATTGAAGCCAAAGTACACATGGAAAAGAAGAAGAAGGAATTGGAG CACAGAAGAGAAATGGAAATACTACATTACAAGAATAAGATAGCAAGGATAGATATGGTAAAAAAAGGAGCAATAACACA GTTGGAAGACCACAGAAGAAAAGAAGAGTCCAAGGTCAGAGAAAAAGCAAACAAAGTCAGAAAAACAGGAAAGGCCCCCA TCAAATGTTTCTGCTTCAAATCTTTCTAG
Protein sequence (LotjaGi1g1v0192300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYTRDDEHVTAVAAAAFAIHSLEEARLLNLQKNLQKMREGPKISKNLTVRGEEENTSRKLSNGETSMKRSFGEDPPRKT ESAIPERRPSSISSAAGYQRKKGIPIQNKNDMAKAEAWEKAKIERIQKRYGKLKSNILSWESEKKIEAKVHMEKKKKELE HRREMEILHYKNKIARIDMVKKGAITQLEDHRRKEESKVREKANKVRKTGKAPIKCFCFKSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 217 | 216 | 6.0E-64 | – | |
| PANTHER | 2 | 217 | 216 | 6.0E-64 | – | |
| MobiDBLite | 40 | 97 | 58 | - | – | |
| MobiDBLite | 44 | 60 | 17 | - | – | |
| MobiDBLite | 71 | 85 | 15 | - | – | |
| Pfam | 112 | 213 | 102 | 7.2E-20 | ||
| Coils | 123 | 143 | 21 | - | – | |
| Coils | 185 | 205 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0192300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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