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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005516
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.883s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063549.1
n.a. Uncharacterized protein TCM_014147 [Theobroma cacao] gi|508774721|gb|EOY21977.1| chr0 21630251 21632086 -
2 domain predictions
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Lj0g3v0111419.1
n.a. Remorin [Medicago truncatula] gi|357437795|ref|XP_003589173.1| chr0 48387917 48392937 +
2 domain predictions
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Lj0g3v0165929.1
n.a. F16A14.13 [Arabidopsis thaliana] gi|8778390|gb|AAF79398.1|AC068197_8 chr0 78813124 78815773 +
2 domain predictions
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Lj1g3v1650320.1
n.a. remorin [Glycine max] gi|83853834|gb|ABC47866.1| chr1 19839236 19843430 +
2 domain predictions
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Lj1g3v2628710.1
n.a. PREDICTED: remorin-like [Glycine max] gi|356532022|ref|XP_003534573.1| chr1 30732938 30737430 +
2 domain predictions
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Lj1g3v4264390.1
n.a. PREDICTED: remorin-like [Cicer arietinum] gi|502108893|ref|XP_004493513.1| chr1 50272738 50274875 +
2 domain predictions
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Lj1g3v4264400.1
n.a. PREDICTED: ras guanine nucleotide exchange factor P-like [Cicer arietinum] gi|502166052|ref|XP_004513774.1| chr1 50272738 50275323 +
2 domain predictions
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Lj2g3v1266110.1
n.a. Remorin family protein [Arabidopsis thaliana] gi|15222980|ref|NP_172845.1| chr2 20128186 20130311 +
2 domain predictions
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Lj2g3v1875620.1
n.a. Remorin-like protein [Medicago truncatula] gi|357482899|ref|XP_003611736.1| chr2 27944406 27947376 +
2 domain predictions
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Lj2g3v1879770.1
n.a. Remorin-like protein [Medicago truncatula] gi|357482899|ref|XP_003611736.1| chr2 28019568 28022993 -
2 domain predictions
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Lj2g3v2017500.1
n.a. PREDICTED: remorin-like isoform X1 [Cicer arietinum] gi|502159962|ref|XP_004511588.1| chr2 30855950 30858516 -
2 domain predictions
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Lj4g3v0166400.1
n.a. Remorin family protein isoform 1 [Theobroma cacao] gi|508709250|gb|EOY01147.1| chr4 2104122 2109786 -
2 domain predictions
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Lj4g3v2500600.1
n.a. PREDICTED: flocculation protein FLO11-like [Cicer arietinum] gi|502141560|ref|XP_004504545.1| chr4 33892834 33897846 +
2 domain predictions
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Lj4g3v2526060.1
n.a. Remorin family protein [Theobroma cacao] gi|508708943|gb|EOY00840.1| chr4 34088269 34091753 +
2 domain predictions
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Lj4g3v2928720.1
n.a. symbiotic remorin 1 [Medicago truncatula] gi|369795076|gb|AEX20500.1| chr4 38885586 38886808 -
2 domain predictions
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Lj5g3v2013850.1
n.a. Remorin [Medicago truncatula] gi|358348650|ref|XP_003638357.1| chr5 28383584 28386438 +
2 domain predictions
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LotjaGi1g1v0192300.1
n.a. Remorin family protein; TAIR: AT5G61280.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|G7IWD6|G7IWD6_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi1g1v0192300 LjG1.1_chr1 38014213 38016551 +
2 domain predictions
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LotjaGi1g1v0192300.2
n.a. Remorin family protein; TAIR: AT5G61280.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|G7IWD6|G7IWD6_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi1g1v0192300 LjG1.1_chr1 38014576 38016537 +
2 domain predictions
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LotjaGi1g1v0355700.1
n.a. Remorin; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|Q00M66|Q00M66_SOYBN Remorin; Found in the gene: LotjaGi1g1v0355700 LjG1.1_chr1 82719072 82723464 +
2 domain predictions
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LotjaGi1g1v0473100.1
n.a. Remorin; TAIR: AT3G61260.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|I3SFM9|I3SFM9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0473100 LjG1.1_chr1 98358130 98363784 +
2 domain predictions
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LotjaGi1g1v0720300.1
n.a. Remorin, putative; TAIR: AT2G41870.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A1J7HF58|A0A1J7HF58_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0720300 LjG1.1_chr1 129094533 129098565 -
2 domain predictions
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LotjaGi2g1v0297100.1
n.a. Remorin family protein; TAIR: AT1G13920.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|G7JXW7|G7JXW7_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi2g1v0297100 LjG1.1_chr2 77204078 77206532 +
2 domain predictions
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LotjaGi2g1v0402000.1
n.a. Remorin family protein; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A1J7G2M9|A0A1J7G2M9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0402000 LjG1.1_chr2 89928691 89943976 +
2 domain predictions
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LotjaGi2g1v0402000.2
n.a. Remorin family protein; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A1J7G2M9|A0A1J7G2M9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0402000 LjG1.1_chr2 89928691 89943976 +
2 domain predictions
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LotjaGi2g1v0402000.3
n.a. Remorin family protein; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A1J7G2M9|A0A1J7G2M9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0402000 LjG1.1_chr2 89928766 89932520 +
2 domain predictions
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LotjaGi2g1v0432700.1
n.a. Remorin; TAIR: AT5G23750.3 Remorin family protein; Swiss-Prot: sp|P93788|REMO_SOLTU Remorin; TrEMBL-Plants: tr|I3SR01|I3SR01_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0432700 LjG1.1_chr2 92952332 92955298 -
2 domain predictions
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LotjaGi3g1v0380700.1
n.a. Remorin family protein; TAIR: AT3G61260.1 Remorin family protein; Swiss-Prot: sp|P93788|REMO_SOLTU Remorin; TrEMBL-Plants: tr|I1KID4|I1KID4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0380700 LjG1.1_chr3 77330647 77334586 -
2 domain predictions
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LotjaGi3g1v0407800.1
n.a. Remorin family protein; TAIR: AT1G53860.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|G7L969|G7L969_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi3g1v0407800 LjG1.1_chr3 81129991 81133924 -
2 domain predictions
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LotjaGi3g1v0407800.2
n.a. Remorin family protein; TAIR: AT1G53860.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|K7MEL6|K7MEL6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0407800 LjG1.1_chr3 81129991 81133924 -
2 domain predictions
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LotjaGi4g1v0017500.1
n.a. Remorin family protein; TAIR: AT2G02170.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A0S3R0X6|A0A0S3R0X6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0017500 LjG1.1_chr4 2226974 2232806 -
2 domain predictions
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LotjaGi4g1v0088500.1
n.a. Remorin family protein; TAIR: AT1G69325.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|K7L3C1|K7L3C1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0088500 LjG1.1_chr4 11772135 11775185 +
2 domain predictions
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LotjaGi4g1v0088500.2
n.a. Remorin family protein; TAIR: AT1G69325.1 Remorin family protein; Swiss-Prot: sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr|G7JHG5|G7JHG5_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi4g1v0088500 LjG1.1_chr4 11772262 11775180 +
2 domain predictions
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LotjaGi4g1v0104900.1
n.a. Remorin family protein; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|K7KP85|K7KP85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0104900 LjG1.1_chr4 14601391 14604564 -
2 domain predictions
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LotjaGi4g1v0329200.1
n.a. Remorin; TAIR: AT1G67590.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A0S3R1H4|A0A0S3R1H4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0329200 LjG1.1_chr4 70793043 70796851 +
2 domain predictions
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LotjaGi4g1v0329200.2
n.a. Remorin; TAIR: AT1G67590.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|A0A0S3R1H4|A0A0S3R1H4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0329200 LjG1.1_chr4 70793353 70797003 +
2 domain predictions
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LotjaGi4g1v0362100.1
n.a. Remorin; TAIR: AT1G30320.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|I1KRX0|I1KRX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0362100 LjG1.1_chr4 74102223 74107422 +
2 domain predictions
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LotjaGi4g1v0362100.2
n.a. Remorin; TAIR: AT1G30320.1 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|I1KRX0|I1KRX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0362100 LjG1.1_chr4 74103266 74106869 +
2 domain predictions
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LotjaGi5g1v0027600.1
n.a. Remorin; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|V7CTZ3|V7CTZ3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027600 LjG1.1_chr5 4580330 4589750 -
2 domain predictions
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LotjaGi5g1v0027600.2
n.a. Remorin; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|V7CTZ3|V7CTZ3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027600 LjG1.1_chr5 4583982 4589732 -
2 domain predictions
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LotjaGi5g1v0301500.1
n.a. Remorin; TAIR: AT5G23750.2 Remorin family protein; Swiss-Prot: sp|P93788|REMO_SOLTU Remorin; TrEMBL-Plants: tr|I3T094|I3T094_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0301500 LjG1.1_chr5 61859160 61866203 +
2 domain predictions
 –