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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0193300 |
| Transcript ID | LotjaGi1g1v0193300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|G7IZB8|G7IZB8_MEDTR Ninja-family protein AFP1; Found in the gene: LotjaGi1g1v0193300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38246236..38252409) extracted from Lotus japonicus Gifu genome v1.2.
TCGCTCTATGTCTTCCTCTTTTCTCTATAACCCTTCTTTCTTGTTCTCACTCTCTTCAACTCTTTTTCTTTTCTTTTTGT TTCTCCATCATAGCATTGTAAGCCCCTGCCCCCATTGTTTTTCTTCTCTTTCATTGACTATTTTCTCATAATTCCTGGTT TGGGTTTTAAACTTGCATTCTGATTCTAGTGCAATTTACTTTTTAATTTTATTTTGTATCTTTTTGCATCATCTCTTACA CTCTTTTAAGATAACTGCCTAACCACATTGTAATTGTGTGCATAACTTGTTTATTGCACTTTTTCCCTTAGGGAGAAACC TAATTCAGGTTTTTGTTCTGCTGAAGGATTTTTCTCATTTTCTATCTTGTTTCAATGGAGGTAAGAAGAAAAATTAAGTT GTTTTTTTTCAATCATGTCACAATTCATGATTTCTATGTAATTGTCCCCCCTTTTTTGCAGATGTTTTGTGGTGAGAAAC AGTACAACTACAACACCAGGTTACCCACAAACTCCAGCAAAATAGAACTTAATCTTAAGGTTTTCCCTTGTGGTGAAAAT ACAAAAGAGAGGGGGCTGACAAGGTCATCATCATTAGGGGCTGGAGAGAGAGTAAAGAAGATCAGTGTGCCATCTTTGGA GAGATCTTGCTCTCTTCCAGAATATGATAAATTCAAGTTCCTCACAAATCCTACTCGTTATCAAAAGCATGAGGGTAACA TGTTTCTTTTCATTTATGTCCTGTTTTTGTTACCTTGAGTTGTTACAGGCTTTGTTAAATTTGACATTAGTTCCTTTATG TTATTTGATGACTATTCTCATATGGTCGTACATCCTTGATCTGTCCTCCTTTAGGTGATTTCAGTTAACAACTAGAAAAC AATAGTGTTCATCTTTATTTTTTGGATACACAGTAGAAAACCACGGTGAGTCAAAATCACAGTAGAAACAAGCAACCTCC CCTAGCTTAAGTGATTGCCCACCGTGATTTTGGCTTCACAATGTTCACCCTCCATCGATGTTCTAAATATTTTACATCAA TTTAGTTTTTATGTTGTTGTTCTATTCAGTTCTGTCCTAGAGTTATTAGTGATTAGTCCAAGCTTGTGTAAGTCAGAAAT CTATAGGATGAGAGAAGAATTCTTAAAATCGTTTCTAATTTTACATCAAACACAAATGAAACATTAAGCATTTAAAATAC AAAAAACTTGAAGAGAATGTTGGCAGATTCTTAGGTGTTTCCTTGTAAAGGGTGGTGGTTCTCCCATGTTTTTACCTACA ATAGCCCATTTCCGAAGTTTTGAATTACGAAAATGTTTGTAACACTTCAAGAACCATCATTTGTTGCGTCACTCCTTGTT GTTTTTTTTTTTAAAGAATTCCATTCTCGTTGGCAACTTCAAAGAGTAAAATTCGTTTAGAATGTATCATTCATGTTGAC AACTTTGAAGACTACAATCGAATTAGGGGAGATGCGTTTATATGTTTGTAATACTTCAAAGTCCATCATTTGTTGTGTGG TATTACTTCTTGTGCCTCACTCCTTGTTACTCTTGCTCTCGCTTGTATCCCCCCTTTCTAGACTCGTGTATCTGATTTCC CTAACATGTTATGGTTAAAATGAGTGGAAGCATTGAAATGAAGAATAAGATATCTTTATAATTGAAAATCTGAACATGAC AATCACAAGTATCCTTATAAACTGTACTTGAATTCTGCTATGTATTACATGTGAAGAAACTATGTCTGACAATGTAATGA AGAAAGTTATAGTAAATCAATAGCAAAAAATGTTATATGAAATTTTTGTTGGAAATCCAAATATATATTAAACATAATAA AAATGGAAGAGGCTAAGCAAAAATCCTCAATCATCCACAGATATACACAACCACTTAACCACCCTAAAAGGTATAAACAA CAAGACACTCCCTGAACATAAGAGCAAACCAAAAGAAAACCGAAGACCTAAACCAGAACCAAAGACAAAACCAAGAGTAG TATCAACACTCAAGGAGGCCACCAGTCCTCCATTTCCTGTGTCAAGCCGCGGATAGCAGCCTCGTCCCCACCGTCAAAAG TACACCCCACAAGCTTGCCAACCGTCCACATCTTCTTAGCTCGCGTCCAATAACGACCACCAGGAGCGTTCCCTGAATCC AATAGAGCATAACGAACTAAGGGCATGATAGCACTCGAGGAGGGACCTCCTACATCTACCGCAACGGAATCCACACAAGT CGTCATAGGCACCAGATAGAGCATCCGACCTCTCTTGAATTTTTTTGGACGCCCTCGCCTATGGGAAAGAACATCCGAAG ACGACACATTCAAACCAACTGCTATATCAACGAGCTGATGTTGAGCTACCCCACCATCTTCAACCCAGACATTCAAGCCT AGGAGGAAGAAAATGAAGCCCATCATCAGAAACACTAGGATGAAATGGGTCAAACCCGTAGCTTCCCACATCAACCGTCT CAACTGGAGGTAGAAGAGATCGAAGATGTAGAAAATCAAAGAGACGACGACCAAGAAAGGAATCCATCAGGAAGACATCA TGGGAAGATCTCTGAAAATACAAAGGAACCCGGATGTCGAAGGGCAAAGCCATAACAACCTTCCTTTCTCTAAAGACGAG GCTACGCATAAGGGTTAACAAAACAGCCCCGCAGAGTTATCATTAAAGATGATACCTATAATACCAAGCCGATTAATACT AAAAGAAAATGTTATATGAATTTAATACAAAGAATTAGAGATCATAATATTACAGTACATGACAATAGACAAATAAAACA ATGGTAATGGTTCATATCATAGATAACACAAGAGATTCTGAAATTTAATTCTAAATTATAGCCATTTAAAGAAATCATAA CTCTTTGTATATATATTTATGATTGGTAATAAAAAAAATTTTATTAAACATGAAACTTATTTTATATGAAAATTTATAAC CATCTTTTGAGATTAGTAGAATAATTGAACAGATGTATTTTAGGAAATATAGGGGTTGGGAGTTCAGTAGTGATGAAGAA AGAGGAACTGGAAAAAATGGCAGGCTTCCTTATAGGCAAGTTCCATTCTAGATACTTGGAACATTAATGATGTACATTTT ATGCATGAAAACCATGTTGATGATAATGTCCTTCATTGCCTGCAGAATTTTTTATACCAACCATAATCAAATATTGTTGC CATAAATGGTATTGAGCTATTAAACACAATTTTCTTACCTATTCCTTATTCCTTATTAGGCCACCTTTTATCATCTTTTC CTTCTTAGATGTCATCGTAAATAAAGGGCTCATTGAATTAGTTTTATAGTCACAACATGTTTAAACTTTGTTGCTAAATA AGGGATGTCGTGAGGTCATTCAAACTTCAAATCATGAGTCTGAAACAGAAGTTGTATTTTTTCTGCTTTTGATGTTACAA CACATCATATTTATAGATATTTTCTCTATACAGGATAGCATGTTATTTCTGGGTGGTAGAAAATCTACAAACTTTAGAGA ATAATAATTAAACTAAGACATTGTTTCACCCACCAACAACATACATTACTCTTTTTCCACTAGATGGAGGCGTTACTTAG ATAAAACTGGCACCATACTTTCTTGAATGGATTCACTCATAAAAGAAAAAAAATGATGCAGACAAGAAAACTTAGCAAAG AAAAGATCCATGTGTCCACATGCGCTATATAGTAACATCAATTGATTTATACGGTAAACTAATAAATACTTCTAACACGA CATAGTTTATTGAAAAGAGAAAAAAATGTATTTAAGTTTTCTTAAAATGTGCTTATAGGAAAAAGTTAACAGAAACCATT TAAAATTTCTTTTAATATCATTCCATATTTATATAGTTGAGCAGTGATATCACAACCAAGTTAGTCTTGTATCAAAGTCT TGGTTAATCTTTGTATAAATATTCATAATACTCCTCTGATTGTGCCAAAGTCTCAATACTCGGATGGTATTATGGCTAGA CCTAGGTGTGCTTTAGTTGCTGGGATATTTGTTGGCTTGGTCTTTTGATTGTCTAGAGAAAACTTTTGTTCAAGGACTTG TAAAACAAATAAGTTATCTTTCTCGTAGGGTTTAACTAGGGCTCGTTAGCTAAATGTGGTTGCTTTACTCATGTGCAACA GTTTGAAGCTCGTGGGGCTTATATATTGGTTCGGTTGCTTGGATTTGGTTTTTTTGTAGCTTTTTATTTGTGTTTTGGTT AGTTTTTTTCCCCGATTTTTTTTTTCTTTAATAGGGGTTGGATTCTTCGGTAATTAGGTGATTATTTTGTTTGGTTTATG GAATTTGCTTTTTCAGTTTTTTTTTTTTCTGCCTTCTATTTGTATCTGCTTTCCTAGAGTTGTTTTTCCTCCTTAAATAA TACTTTCTTTTGCTTTCAAAAACAATTACATTTGTTCTTCATTGGTAGATAATATATATAGTTGCAATGCTCCAATATTT ATATGCTAGAAATAAGTGATACATCACTATGTCAAGACATCATACTTCAGATCCTTAGGTACATTACACAAATATTAGTT TACTGATGTACATTCGTTTAGGTTATACCTATGTTTATATCATTTTATTTACTTTATGAATCATTAGTAAGATCATTACT TCTTGATTTTGTTCAGTTACTTACCCAATACATACTAATAAACTATTAGGGATGGGATAAAACTTCCTTATTGAAGAGTA TATTTATTATACAATCTCGGACTTTATCAAAATCTCTCCACTACTGAATACAATTCTTCCAGAATAAAAATCCTAATTCA CCTTCTCACTAAATATTAAATACTCTACTACCTTTCTAGTAAGATAACTACAGTCAGTAATTGATGAGTAAGCTACCAGC ATAACAACGATAAAATTGCCAACCGCATACTAACTAATTAGTTTATGCATAACTGACCAAAGCTCAATTACGAACTATTA AATAAAGCTGGAATCGTTGTTCTCTCAAAAGATTTACATGTCAAATTGATGATATTTTCTTTTAGTTCTATGAATTTATG TTGAGTTTTTTTTTTCGATGTTCATGCTTTCTTCATAGCTTTCCTGGTAGTATATGCATTAGATATTTTAGAGCTTTATC TTGCCTACCTTTTTAATGTAATAGGATGATAACAATTGTATACAATCACTTATGTTTTCCATGAAGACCATTTTGCAGAA AATGTAGAAAAATGTTGTTAGTTATCAAGGTTATGCCTTGGTCATTTTTTCACTCATGAACAACTTGTTCCATGATTATA AGTAAATACTAAACTAGTAAGTGACTTATCATTTTGCAGTAATGCTGAGATGGCTTTTACTGATGGTTTCTCTTACTGGT TATATATCCATCAACAACAACTGGTGCAGAACATTAATTAAAGATTAAATTATTTTCGTATAAGAAAATTATCTCTCTAA ATACATCCAATATAATTTTATCTTTAAAAGAAAAACTTCTCATTATTTAATACATTAATAGTTGTAGATATTACACACAA CTCAGTTATTGTTCCTTAACTATTTTATCATCTGATTTGTTTTATATCAAGCTGAAACTTTCTTGCTTGTTTTGATCTGA AAAGATACGTTCACATTTTTTTCATAAATCATTCCATGTACAGGTCCAAGACATTCAGCTGAAGGAGAAGTTGTCTTTAA GAAAGAAAATGATTCAATCGTTTCCTGGAAAACAATTGTGAAGGAAATTTCACCTAGGTCTTTCAAAACTAAACAGGAGA ATCCTACCAAAAAGCTTAAGATTCCTAATTCCTGCAGTCTTAAAGATGATGCAATGGAGATCCTGAGACAAATTCCAAGT GTGACTACTACTGGAGATGGCCCTAATGGGAAGAGAAAAGAAGGACTTCTGTACAATTATAAGTCTGGTCAAGTTACTAT TGTATGCGTCTGCCATGGTTACTTCCTCACTCCAACAGAGTTCATCATGCATGCTGGAGGCAAAGAAGTGGCTAACCCCA TGAAGCATATCACTGTTTATTTTAGCTCATTTTAGAGGTCAATGTGAAGTACTATATAAATAATCTATCTCATAATGTGG AGATAAGTGGAATGCATGAAACTCTCTTTAATTATTTAGTTTTCGTAATTATCTTATCTAGTCTTCAAAAATTTGAGCTG CAAGATTAAGTTAG
CDS sequence (LotjaGi1g1v0193300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGTTTTGTGGTGAGAAACAGTACAACTACAACACCAGGTTACCCACAAACTCCAGCAAAATAGAACTTAATCT TAAGGTTTTCCCTTGTGGTGAAAATACAAAAGAGAGGGGGCTGACAAGGTCATCATCATTAGGGGCTGGAGAGAGAGTAA AGAAGATCAGTGTGCCATCTTTGGAGAGATCTTGCTCTCTTCCAGAATATGATAAATTCAAGTTCCTCACAAATCCTACT CGTTATCAAAAGCATGAGGGTCCAAGACATTCAGCTGAAGGAGAAGTTGTCTTTAAGAAAGAAAATGATTCAATCGTTTC CTGGAAAACAATTGTGAAGGAAATTTCACCTAGGTCTTTCAAAACTAAACAGGAGAATCCTACCAAAAAGCTTAAGATTC CTAATTCCTGCAGTCTTAAAGATGATGCAATGGAGATCCTGAGACAAATTCCAAGTGTGACTACTACTGGAGATGGCCCT AATGGGAAGAGAAAAGAAGGACTTCTGTACAATTATAAGTCTGGTCAAGTTACTATTGTATGCGTCTGCCATGGTTACTT CCTCACTCCAACAGAGTTCATCATGCATGCTGGAGGCAAAGAAGTGGCTAACCCCATGAAGCATATCACTGTTTATTTTA GCTCATTTTAG
Protein sequence (LotjaGi1g1v0193300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMFCGEKQYNYNTRLPTNSSKIELNLKVFPCGENTKERGLTRSSSLGAGERVKKISVPSLERSCSLPEYDKFKFLTNPT RYQKHEGPRHSAEGEVVFKKENDSIVSWKTIVKEISPRSFKTKQENPTKKLKIPNSCSLKDDAMEILRQIPSVTTTGDGP NGKRKEGLLYNYKSGQVTIVCVCHGYFLTPTEFIMHAGGKEVANPMKHITVYFSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 71 | 64 | 3.6E-59 | – | |
| PANTHER | 8 | 71 | 64 | 3.6E-59 | ||
| PANTHER | 80 | 216 | 137 | 3.6E-59 | – | |
| PANTHER | 80 | 216 | 137 | 3.6E-59 | ||
| Pfam | 168 | 210 | 43 | 3.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0193300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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