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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR031307
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.480s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023740.1
n.a. PREDICTED: ninja-family protein AFP2-like [Glycine max] gi|356526505|ref|XP_003531858.1| chr1 34482632 34486818 -
2 domain predictions
1 GO term
Lj2g3v0834810.1
n.a. PREDICTED: ninja-family protein mc410-like [Glycine max] gi|356496418|ref|XP_003517065.1| chr2 12975606 12979003 -
2 domain predictions
1 GO term
Lj2g3v0834810.2
n.a. PREDICTED: ninja-family protein mc410-like [Glycine max] gi|356496418|ref|XP_003517065.1| chr2 12975822 12979003 -
2 domain predictions
1 GO term
Lj2g3v0834810.4
n.a. PREDICTED: ninja-family protein mc410-like [Glycine max] gi|356496418|ref|XP_003517065.1| chr2 12975822 12978870 -
2 domain predictions
1 GO term
Lj2g3v1252520.1
n.a. PREDICTED: ninja-family protein AFP1-like [Cicer arietinum] gi|502094378|ref|XP_004490204.1| chr2 19841775 19846166 +
2 domain predictions
1 GO term
Lj3g3v0719960.1
n.a. nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] gi|22330903|ref|NP_187381.2| chr3 8087276 8089373 +
2 domain predictions
1 GO term
Lj4g3v1720830.1
n.a. PREDICTED: ninja-family protein Os03g0419100-like [Glycine max] gi|356516869|ref|XP_003527115.1| chr4 24724458 24728607 -
2 domain predictions
1 GO term
LotjaGi1g1v0193300.1
n.a. Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|G7IZB8|G7IZB8_MEDTR Ninja-family protein AFP1; Found in the gene: LotjaGi1g1v0193300 LjG1.1_chr1 38246236 38252409 +
2 domain predictions
1 GO term
LotjaGi1g1v0213100.1
n.a. Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|G7IZB8|G7IZB8_MEDTR Ninja-family protein AFP1; Found in the gene: LotjaGi1g1v0213100 LjG1.1_chr1 47037176 47042373 +
2 domain predictions
1 GO term
LotjaGi1g1v0513000.1
n.a. Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|B6SM63|NNJA5_MAIZE Ninja-family protein 5; TrEMBL-Plants: tr|A0A0S3RRT6|A0A0S3RRT6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0513000 LjG1.1_chr1 103496710 103501461 -
2 domain predictions
1 GO term
LotjaGi2g1v0221500.1
n.a. Ninja-family protein; TAIR: AT4G28910.1 Putative interactor of JAZ; Swiss-Prot: sp|Q53HY2|NINJA_TOBAC Ninja-family protein mc410; TrEMBL-Plants: tr|I3SU91|I3SU91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221500 LjG1.1_chr2 67677252 67680978 +
2 domain predictions
1 GO term
LotjaGi2g1v0221500.2
n.a. Ninja-family protein; TAIR: AT4G28910.1 Putative interactor of JAZ; Swiss-Prot: sp|Q53HY2|NINJA_TOBAC Ninja-family protein mc410; TrEMBL-Plants: tr|I3SU91|I3SU91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221500 LjG1.1_chr2 67677254 67680780 +
2 domain predictions
1 GO term
LotjaGi2g1v0221500.3
n.a. Ninja-family protein; TAIR: AT4G28910.1 Putative interactor of JAZ; Swiss-Prot: sp|Q53HY2|NINJA_TOBAC Ninja-family protein mc410; TrEMBL-Plants: tr|I3SU91|I3SU91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221500 LjG1.1_chr2 67677268 67680407 +
2 domain predictions
1 GO term
LotjaGi2g1v0294100.1
n.a. Ninja-family protein; TAIR: AT1G69260.1 ABI five binding protein; Swiss-Prot: sp|Q9LQ98|AFP1_ARATH Ninja-family protein AFP1; TrEMBL-Plants: tr|A0A072UEP6|A0A072UEP6_MEDTR Ninja-family protein AFP1; Found in the gene: LotjaGi2g1v0294100 LjG1.1_chr2 76898914 76903786 +
2 domain predictions
1 GO term
LotjaGi3g1v0086500.1
n.a. Ninja-family protein; TAIR: AT3G07255.1 nuclear transport factor 2/RNA recognition motif protein; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|I1JM54|I1JM54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0086500 LjG1.1_chr3 9768128 9770447 -
2 domain predictions
1 GO term
LotjaGi4g1v0255400.1
n.a. Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|A0A0S3R776|A0A0S3R776_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0255400 LjG1.1_chr4 60920892 60925509 -
2 domain predictions
1 GO term