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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0194900 |
| Transcript ID | LotjaGi1g1v0194900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L13; TAIR: AT3G01790.1 Ribosomal protein L13 family protein; Swiss-Prot: sp|O67722|RL13_AQUAE 50S ribosomal protein L13; TrEMBL-Plants: tr|V7AP14|V7AP14_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0194900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38658589..38663457) extracted from Lotus japonicus Gifu genome v1.2.
CAGACATTTACAACTTCGCTTCCAATATCCCAACGCAATTACTTACAGCAGACACAGCCGCCACCCCTCGTCGTCCGATA GCTTCCGCCGTTACCCGTCGTCGGCCGATAGCCACCGCCGGTGAGTCTCCACCCCTCTTTCTCCGTCAGTATTTCTCTTA CTCTCGCCGTCGCCACTCACCTGTCACGATCTCATTCTCCCTCACTCACTCATTCAATACGATTCATTCTGTCTAGTGCA GTGAATTTTGAGGATTGAAGATCGACCCAACAAACAGAATCCAAAATGAAGATGCTAACATCTTTCAACATGAAGGTGAT TAAAGTTTTGGAACACCCTTTTGGATTCGTACTCATACTCATGTTATACAAACATGCATGCATGCCAACTGTTTGTGAAA ATGCTGTTACTGTTTTATGGACTCAATGTGATTCGTTTTTTGAACTTACTGTCAAATTTGTTTCTCTTATGATCTCAGAA AGCCGCTGCTGGGCTTCGACGCATCAATCTCGACGGTCTCCGCTGGCGGGTTTTCGATGCCAAGGGCCAGGTCAGTGTAA TTTATGCTATTGCCCGCTATGTGACCATGATATGATGATTCTGATGTCAAGTTAGAGTATTTTCTCCCCCCCTAATGTAT ATGATCCAAGAGTAAGCTCCTTCTGAGCATTAAACACATGTATATCAGGGCTGTTAATGGCGGATAGCGTAGTGTAGCGG CAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGCTATAGTGGAAAATAGCGGTGAATAGTGGAGTAGAGGTGAAC CCCCAGGGCGCTACGCTATAGGCTATTGCGCGCTATTAACAAGCTTGATGTATATGATTGGCAGCATTTGCATTATGGAA AAAAGAAGTGTGTATTGGGTTGATGAGATGATTCCCAAACATTTAGCGTATTGGCTTGCATATCATGGGTTACTGGGATT TAAGACAAATCCGACGAGGAGCAAGAAAGCACAGTAGCTGTACGGCTGTACCTCCGTATCCGACACATATTCATGTTGGA TTTTTTTGGATATTCCTAGATGCCTTTCATATTTTTTCCCCTTTGATTTTTTTAGCTACACAAATACAGATGTGAATACC AGAGTAATTAAATAAATTAAACATGCTGTATGTCTATAATAACTTATGGTCTCTTTTAAAAGATTGATTCTCTGCTTTGA TTTATAATGTGTTAGATGTTAATTTTATGGAATCACTTACGATACACTAAGAATTTGTGCGCTGGTACACAATATAAAAT GACCATTGATTTATAATTCAGTATAATAAATGGTGGAGATTCATCACTGTCAACCGTTTAATCAATCTGCCCATGATTTA CATATGGGAGATAGATCCTGTTAAAGCTCCTCTGCTCTGAATCTGAATTGTGAAGAACTGGCATTCACAGTGAACTCCGA ACCTTTGTTTCGTTCTTACCTCACCAGGTGCTCCAATAAACCCACAACTTCTGCTCCTTTTCTTTCCAATCTCTCAAGGT CACTCACTCTACATCCTCCATTCTCTTCTTACTTCAAAAACAAAAAAAAGAAACCAACAACTAAAATAGAAAAAGAAAAT TCACCTTCACTGAAATTCAATGATAAGAAGTGAAAATAATTTGTGAGATCTGTTTGGAAATCAACTTGAATTTATCAGTG TTGTTATGTTTGGGAATACAGTTTAAGAGAGTACATGAGTTGATTGTAGTACATGTTTGCACGTGATATTTCTCTTGAAG TCATGAGATCATTTCGCTAATTATATGCGTCTCTTGTATAGGTTCTTGGTAGGTTAGCATCTCAAATAGCTACTGTAGTC CAAGGAAAGGACAAGCCAACTTATGCTCCTAATCGTGATGATGGAGATATGTGCATTGTGCTTAATGCAAAGGATGTTTG TGTGACTGGGAGAAAATTTAAAGACAAGGTCTACTACTGGCATACAGGGCAAGTACTTCACATTGAATATTTTAACTTAG AATTGAAGAAATATTATTTATTAATTGGATTTCTTGTAAATTACATTTTTTATTGTGATTTAGATGCCCGTCTTCTTCAA AATTCTTCCACTGATGCTATAATTGCCTTTTGCTTATTTGATATCTTATTCCCCATAATCTGTTGTCATTATTCAAACTA ATTTGACATAAAGTAGTGGCATGTAGGTATGTGGGGGGCCTCAAGCAAAGGACTCTGAAGGAACAGATGGCCAAAGACCC TACAGAAGTAATTCGCAAAGCTATTCTGCGCATGCTGCCAAGAAACAAACTACGTGATGTAAGTGCCGTTAGACCAATGC CTTTGGAAATTTTGAACTGTGAGTATGGAATTTAACTGTTAGTGGCCAGAACGAGAGCTTTTTCATGTTGGGTTTGGAAT TTGTATGAGTAGACCCGTTGGAGACAAAAGAAAAGGAATGAAAACCCTGAAACAGTATGCCCTAGCAATTTCAGGCTTTG AGGTTAAGATTTCCAGAATTTATTCCTACTGCAGAAATCATATCTATATGAAGTGATTTACAGAAAGCTTTTGTGATTGA TGATCGATTGAGGTAGGACCTGTTGAGATATCTATTAAGAGATATCTATTAGGATATATCTTGTTGAGACGATTTGTTAG GATATGCTTTGTTAGGATTAGATTTTTATTGTTTAGTGTTAGTAGTTAACTAGGAAACCTCTAGAAATCTAGTCTATAAA TATTGTACTTCTGAATCAATAATTAATCAAGTATCAACAGTTATTTAGAATACTTCCAATGTCTCTCTTCATAAACTAAA AGAGTAAATCGTATAATTTCAACAGGACCCAATGGTTCTCCATGAGGAGTCCTACAAGCAAGATGATAAATTAATTTTTA CAAGTGGAAGTCATGAATTTTTAAAACTATCTGGCTATCTGCATATGTGCGTATAAATCCGAAAAAAAGTTTGAAATATT AATCTATTTTTCCAGGATCAATTATTTTACAATCAGTTTCTTACAATCTAACCCGAATAGACCCATAGTCATTTGGAGGA AAAAATAATTAAAAGGAACAAAAGAAAATGAGGGGAGTATTGTGGCATTGTATCCTTGATAGGTAACTCTTACAGGCAGT AAGAGAGAATTAGTTGGTTAGTTAGTTTAGGTTGTTAGTTAAAGATGAGAGGTTATAAATAAGGATGAGACAGTTTATCT TTTGTTTTGTAATAAGGGTCCAGAGTGGGAGAGAACCAGGTCTCTCGAATACCTGGCTGTACCAATAGTTGTCTTGTGAA TGAACACAATTTCTTCCAATATTTCTTATCTAGTTTCTATCAATCCTTTAACAAAATCACAACCATGTTTAGCAACAATC CTTAAGAATCTCCATTTTTTCACAATAGTAGACAGTAATCCAGCTATTTTGAGTGGAAATAAGACCTATGCATCCTATGT TACTGAAGCAAGTCTTTTGACCTGATTTTATTATGGATACTAACATGGCTGTCCTAACAGTTCTTTTTCATCCATTGTAA ATTTGGCTACTCAAAATCCATTTTCATCATTCCATGTCATCAACAGGAGCAATTGATCTTATTTTCTTAGAAAACGGGAG CAATTAAATTTCTTTATGGATGAAATTAAAATAAAAAATTTCTAGGGTTAATAGAAAGTATAGGGGTGAGGACTCAGGAG TCACCCCATTCAAGGTAGCATGCCACAGGCCTTACTGCTGAACTGATGACATAGAATGTTTCAAATAGATGATGACTTAC AAATGCAAGTGCACCAATAGGAATTACTGTGGCATTTTTTTGTTGCCAAATGCCAACCCAAGGTTAGGGCATGCCACAGG CCTTACTGCTGAACTGTTGACATAGAATGTTTCTAATAGATGATGCCTTACAAATGCAAGTGCACCAACAGGAATTTACT GTGACATTTTTTTGTTGCCAAATGCCAACCCAAGGTTAGGGCATGCCACAGGCCTTACTGCTGAACTGATGACATAGAAT GTTTCTAATAGATGATGACTTACAAATGCAAGTGCACCAACAGGAATTTACCGTGTGACATTTTTTTGTTGCCAAATGCC AACCTTGTTCGCAACTTCATGAATTTTGTTCCTTGTATTTATCATACAATCCAACACTTCTGCCTTAGTATTTTTCACGC ACCTGGATTCTGTAAGAGAGGAGCATTGAGAAACAGTGCTATCAGTTTATATAAAACTTGTTAGGTCATTTCATTCTCGT ACACGTATTTCTTTCTTAATAGCCTGGTTTTCAATTCTTTTTCTTTTGTTCTGTATCCAATATTGAAGAACTGCTTCTGA GCTGTATATCCTTTGCATTACTGCTAATGATTGTAGGATAGGGATCGAAAATTAAGGATCTTTCCTGGTAGTGAGCACCC TTTCGCTGATCGGCCACTTGAACAATATGAAATGCCTCCCAGAAGCGTGCGAGAAATGCGGCCACGAGCAAGGCGTGCCA TGATTCGAGCACAGAAGAAGGCTGAGCTGCAACAACAGAAGGCTGAACAGCAACAGCAGAAGGCTGATGGAACAAAGGGC GAAAAGAGTGAAGCACAGGGAGAGAGTGCATGAAGACCAGTGGTTATCATTTGGATGAAATATCATCTTTATCAGTTTGC TTTCAGCAGATTCTATAACGCCATATTTAATTGTATGAATTTTTGTTTTACAAGTCTGCTAGTAAGAGCATAGTTTGAAA CCATATTTGATTCACATAATAGTGAATTCTTGGATCTTTTTCTTAGTGACGATTTTTATGGTTCAAGTCAAGTTTTAAAC TAAATTACCATTTTCATCTTCCAAAGATACGGTTGACTTTGCATTAATAATCCAAAGATGGGTTCCGTC
CDS sequence (LotjaGi1g1v0194900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGCTAACATCTTTCAACATGAAGAAAGCCGCTGCTGGGCTTCGACGCATCAATCTCGACGGTCTCCGCTGGCG GGTTTTCGATGCCAAGGGCCAGGTTCTTGGTAGGTTAGCATCTCAAATAGCTACTGTAGTCCAAGGAAAGGACAAGCCAA CTTATGCTCCTAATCGTGATGATGGAGATATGTGCATTGTGCTTAATGCAAAGGATGTTTGTGTGACTGGGAGAAAATTT AAAGACAAGGTCTACTACTGGCATACAGGGTATGTGGGGGGCCTCAAGCAAAGGACTCTGAAGGAACAGATGGCCAAAGA CCCTACAGAAGTAATTCGCAAAGCTATTCTGCGCATGCTGCCAAGAAACAAACTACGTGATGATAGGGATCGAAAATTAA GGATCTTTCCTGGTAGTGAGCACCCTTTCGCTGATCGGCCACTTGAACAATATGAAATGCCTCCCAGAAGCGTGCGAGAA ATGCGGCCACGAGCAAGGCGTGCCATGATTCGAGCACAGAAGAAGGCTGAGCTGCAACAACAGAAGGCTGAACAGCAACA GCAGAAGGCTGATGGAACAAAGGGCGAAAAGAGTGAAGCACAGGGAGAGAGTGCATGA
Protein sequence (LotjaGi1g1v0194900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMLTSFNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNAKDVCVTGRKF KDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNKLRDDRDRKLRIFPGSEHPFADRPLEQYEMPPRSVRE MRPRARRAMIRAQKKAELQQQKAEQQQQKADGTKGEKSEAQGESA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 9 | 190 | 182 | 8.2E-52 | ||
| PANTHER | 11 | 182 | 172 | 1.9E-81 | – | |
| PANTHER | 11 | 182 | 172 | 1.9E-81 | ||
| Gene3D | 20 | 189 | 170 | 5.3E-58 | ||
| Pfam | 25 | 144 | 120 | 3.8E-47 | ||
| TIGRFAM | 25 | 145 | 121 | 1.3E-45 | ||
| SUPERFAMILY | 25 | 152 | 128 | 9.55E-46 | ||
| CDD | 26 | 139 | 114 | 7.55008E-55 | ||
| Hamap | 26 | 149 | 124 | 26.492 | ||
| Coils | 169 | 203 | 35 | - | – | |
| MobiDBLite | 170 | 205 | 36 | - | – | |
| MobiDBLite | 189 | 205 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0194900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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