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LotjaGi1g1v0199700.2

Overview

Field Value
Gene ID LotjaGi1g1v0199700
Transcript ID LotjaGi1g1v0199700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Heme oxygenase 1; TAIR: AT2G26670.1 Plant heme oxygenase (decyclizing) family protein; Swiss-Prot: sp|O48782|HMOX1_ARATH Heme oxygenase 1, chloroplastic; TrEMBL-Plants: tr|I3SL57|I3SL57_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0199700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:42221245..42224879) extracted from Lotus japonicus Gifu genome v1.2.

GGATATACGTGCAGTGTGGGATACCTGCAGATCCTAGCAATCCTACATCCCTTCCATTCTGCATTCCCACCTGCAGAGAA ACAAAACCACCCATTATTATCACTAATTTAACAAAGAAAACACCAATCGCCTTAAACAAACCACTTCCACAGCACACAGA TACAGTCATACAGATACAGATACAGGCAAGAAGGCACACTCAAATTATTCTTCCCTATCCCCCATACTACTCTGCCTGCT TTTGCTATATCCTCCCACATCATCAATCTATTATTCTATAATTTTCTTATCATCTTTATTTATTATTTAATTATTGAGTC CTGGTCCATCGCTTTTTCTTCTAGGTCAAGGTTCCAATCGTATTTCTCACGCTCTTCCCATCATCGTTTTCACTTCAACG ACTCCGTGCACTCAACCCTATCAACCATGGCGTCAGCCACAGTTGTTTCCCAAATCCAATCCCTATATATCATCAAGCCG CGCCTCTCACCACCACCACCACCACATCGTCAGTTCCGCTCAATTTACTTCCCGACGACGAGGTTGTTACAACAGCATCG CTTCCGCCAAATGAAGTCGGTGGTTATTGTGTCGGCGACGGCGGCGGAGACGGCCAGGAAGCGGTATCCGGGAGAGTCGA AGGGTTTCGTGGAGGAGATGAGGTTTGTGGCGATGAAGCTGCACACCAAGGACCAGGCCAAGGAGGGTGAGAAAGAGGTC ACGGAGCCTGAGGAGAAAGCGGTTACCAAGTGGGAACCAACTGTCGATGGCTACTTGAAGTTCCTCGTTGACAGCAAGGT CGTTTATGATACTCTCGAGAAGATCGTTCAAGATGCTACTCATCCTTCCTGTGAGCTTCTTTACTTTCTGCTCTCATTCC TTCGTTTTCGATTTTTCTTAACAATTTTTATTTATCTATTATGTGTTTTTGGTTTCTGTTTTTCTAATTGCTATTATTAT TTGTTTTTAGAGGTAGGACTAATTAGAAACATCTTATTAGGTCTTTACCATGTTTGGATCTACTTGCATTTTACTTGCAT CTTTGGATACATTGTTGTAGTGAAGTCAAAATCATGGTGGCCCTTCACTTTTGCGACTGTCTACCATGATTTTGTGTTCC GCTTCTTTCCAAAGATGCACATACTTGCCTTCTAACAAAAGTTATTCCTAGTCAGAATCACTTTTTCAACTTATAGAGTT TCTTTAGTCTCAAGTCTAAATTGACTTCAATCTGAAGTCAATGAAAAAATGCTGAAGGTTATTTTGAGGGTTTGCGGTGT TTTAAATATTTCAGGGTAAAGTAATGGTGAAGTCACTGAGTTGGAACTTGGAATCTTTGGCTTACTGTATCCACATCCTT TATGTGTGATCTGATTTTTACTTGTTTGAAAATGATTCTCAAATCCGGTTGTAGCTTCAAGCCAATTGCAAAGGGAGTAC AGAACATCCTTGATGGTTTGTGATCTTTGAGAATGTTCTGTCTTTCTATCTGTCCCTGCAAGTGCAACCAAACTACCATT ATAAACTCAAACCAATAACAATAACTCCGATTAATGGAAATGATATTTCGCTCTTTTCCCCTAGTTTCTTTTGTAATTCT TTTATTTATAAAACTCCATTCTTTTATTGCTGGAATAAATAAACATGTAATTTACTTTCATGGGTACACCACTGCGAACA TTCTTGTGTACTTTCTTAATTATAGTGAAAGATGATTTTGCCTGGAGTTCATATCTGCAAACTCACTGGTCAGAGCTGTG AATTAGTCTGTCATAGTTGGCTTCGCCATTCTAAATACAGTTCAGAGTATTGCTTTTCCCTTTAACTTCCCTTTTGATTA TTCTTATGCCTGTTTTAAGATTATAATATCCTGTCCAGCCTTCCTGCTATACAAGCTAGACATGTAATTTAGTGAGAAAA TAACTGCGAAACAAAAGCATTATTTAATTTTCTAAATCATGTATCGTCTAACCTTGATATTCTGGGTTTCATTCTTAGTT ATTTTCTTCACATAGTTTTCCATTCTGAGGGTTTCTTGCTGTTATACGTGTTAGTTACATTCTGTTCTTGACCTCTTTAG CACATACACAACTAATAAATTGGAATTCTCTGGTGTGTAGGTATTCTTAACTGACCTGATTGTTTGATGCCTGATGCTTT TGCCTTTATTGTCTAGATGCTGAATTCAGGAATACTGGATTGGAAAGGTCTGCAAGTTTGGCAAAAGATTTAGAATGGTT CAAGGAGCAAGGCTACACCATTCCTCAACCTTCCTCTCCTGGTCTTAACTATGCACAATATCTCAGAGATTTATCTCAGA ATGATCCCCAAGCCTTCATTTGCCACTTCTACAACATCTACTTTGCCCATTCAGCTGGTGGTCGAATGATCGGGAAAAAG GTAACCATTCACATGCACGCTAAAAGAGATTATATTTTGTGTTTACATGGATCATGCACGTCTTTGGTTTGGAGTTTCTT TTGTGGGCCATAATATATGTTTCATGATTAATAGGGCACAATCATATCTAGGGATATTTTCAGTTTTCCTCTCCTTTTGC ACTTCACATCTCCTTGGAGATGTTAGTTTGATGATGTGGGAATTATCCACTTTCTTTTAAGTGGAATGGTCCGTAAAACT TTTATCTGAGGCATGAGTAGTTAAATATTAGCTGGTGTGTTAGATGTTGGCAATTTCCATAACTGTATGCAGATATTGCA GAGTTTTGTCACACATATGTAGGACATATTTTGTTTTCTCTTTGCATCAAATACTTTGTTGTGTTCAACTATTAGTACGA TGATGGTAATAAATCAGTATCACTAATTGAATGCGCATGTTTGGATTAACATATTTTGCACTAAAAGAAATCAGCCCAAA GACCTTTATGATGCATTATGGTAATAAGCTTTTTAGATAGTAAAGTAAGTAACTGAACATTCTTTTCATAACGGTTAGTA AGCTTCACTATATTCTAGATATTATTCAGTAGTTTTCACCTGACAAGGTGAAAAATAGTAATAATTGTTGCTAAATTTTG TATACTCTTGATCTTCTTGCTTCTTAACCTTAACTCTTACAGATTGCTGGAGAGTTACTCAACAACAAGGGTTTGGAATT CTATAAATGGGATGGTGACCTTTCCCAGTTGTTGCAGAATGTGAGGGACAAGTTGAACAAGGTTGCTGAAGTAAGTTTCG TGAATCTCTTAACCAATAACCATATGCATTCATTTCCTTACAATCTTCTTAAGAATAATAAATTAAGTTGATTTCTACTG CAGCTTTATATCTAATTAGTAACAAAAGAGAAAACGAAATCTTTCAAATGTTGTAAGTTAAGCTGATGAATATACCTTTT GGCATTTCTTTGTTTTATCAGCAATGGACTCGGGAAGAGAAGAACCACTGTCTGGAAGAAACAGAAAAGTCATTTAAGTG GTCTGGAGAGATTCTGCGTCTAATTCTATCATGATACTATGTACCAATCTCTATAATTATGTCCACTAATATGCATTGTG GAAGCCAATAAAATTCTCTCATGTGTATATTATATAATTTTCAATTACGAATGAATAACAGAATTTATATTGTGTATTAT TTAGATTCAGTTGAGTTTTTACTTCAATTTTTTTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0199700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCAGCCACAGTTGTTTCCCAAATCCAATCCCTATATATCATCAAGCCGCGCCTCTCACCACCACCACCACCACA TCGTCAGTTCCGCTCAATTTACTTCCCGACGACGAGGTTGTTACAACAGCATCGCTTCCGCCAAATGAAGTCGGTGGTTA TTGTGTCGGCGACGGCGGCGGAGACGGCCAGGAAGCGGTATCCGGGAGAGTCGAAGGGTTTCGTGGAGGAGATGAGGTTT GTGGCGATGAAGCTGCACACCAAGGACCAGGCCAAGGAGGGTGAGAAAGAGGTCACGGAGCCTGAGGAGAAAGCGGTTAC CAAGTGGGAACCAACTGTCGATGGCTACTTGAAGTTCCTCGTTGACAGCAAGGTCGTTTATGATACTCTCGAGAAGATCG TTCAAGATGCTACTCATCCTTCCTATGCTGAATTCAGGAATACTGGATTGGAAAGGTCTGCAAGTTTGGCAAAAGATTTA GAATGGTTCAAGGAGCAAGGCTACACCATTCCTCAACCTTCCTCTCCTGGTCTTAACTATGCACAATATCTCAGAGATTT ATCTCAGAATGATCCCCAAGCCTTCATTTGCCACTTCTACAACATCTACTTTGCCCATTCAGCTGGTGGTCGAATGATCG GGAAAAAGATTGCTGGAGAGTTACTCAACAACAAGGGTTTGGAATTCTATAAATGGGATGGTGACCTTTCCCAGTTGTTG CAGAATGTGAGGGACAAGTTGAACAAGGTTGCTGAACAATGGACTCGGGAAGAGAAGAACCACTGTCTGGAAGAAACAGA AAAGTCATTTAAGTGGTCTGGAGAGATTCTGCGTCTAATTCTATCATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0199700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASATVVSQIQSLYIIKPRLSPPPPPHRQFRSIYFPTTRLLQQHRFRQMKSVVIVSATAAETARKRYPGESKGFVEEMRF VAMKLHTKDQAKEGEKEVTEPEEKAVTKWEPTVDGYLKFLVDSKVVYDTLEKIVQDATHPSYAEFRNTGLERSASLAKDL EWFKEQGYTIPQPSSPGLNYAQYLRDLSQNDPQAFICHFYNIYFAHSAGGRMIGKKIAGELLNNKGLEFYKWDGDLSQLL QNVRDKLNKVAEQWTREEKNHCLEETEKSFKWSGEILRLILS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF030219
20 282 263 5.4E-131
IPR016951
PANTHER
PTHR35703
39 282 244 4.9E-134 –
PANTHER
PTHR35703:SF2
39 282 244 4.9E-134 –
CDD
cd19165
73 280 208 9.15212E-58 –
Gene3D
G3DSA:1.20.910.10
80 280 201 1.2E-42
IPR016084
SUPERFAMILY
SSF48613
82 280 199 2.89E-44
IPR016084
Pfam
PF01126
110 277 168 9.4E-14
IPR016053

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004392
Molecular function Heme oxygenase (decyclizing) activity Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O.
Subterm of
GO:0006788
Biological process Heme oxidation The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in heme.
Subterm of
Part of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0199700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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