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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0200300 |
| Transcript ID | LotjaGi1g1v0200300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ, putative; TAIR: AT3G57340.1 DnaJ heat shock amino-terminal domain protein (DUF1977); Swiss-Prot: sp|Q9FH28|DNJ49_ARATH Chaperone protein dnaJ 49; TrEMBL-Plants: tr|I1KDB5|I1KDB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0200300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:42354713..42357411) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGGTGATGTGGAGTGTTGGGAAGAGAAAAAGTGGAGTGTTGAAGGTGTTGAATGTTGAAACCATTGTGGGTAGTCT AACAAGTTAACAAGTGAGGAACAATCTTCCTCTTTCCCAATATCGCATGGAACCCTAATTCACTTCGTTCTCCATCTACG AACAGCGAGCAATTCACCCACTCTCGTCTTCTATCTCCATCTGTAAGTTCAATTTCCTCCAATCCCTCTTCCCTTGATCT ATCAAATCAAACCGATTCTTCATTTCCTTTCGATTTCGCATTTCAATTCGCAATCATTTCTCTCATCAACGAAATTTCCC AATCGAATCGAAGATTCGTGAATTGTTCTCTCATTTTTCTTGCAGATCCGTTGTTTTTACGAGCTCTGATTGGAAAATAA TGGATGGGAACAAGGACGATGCGCTCAAGTGTTTCAGAATCGCCAAAGAGGCGTTAGAAAGCGGCGATCGGTCACGCGCG TTGAAATTCGTGAGCAAAGCTCGCCGTCTCGACCCCACTCTGCCCGTCGACGATCTATTGACGGCGATAGGGGGCGGCGG CGGCGCAGGCGACAATCCCACCGAAGCAGCTGCCGAGCCGGGGAAGCCCGCTGCTGATAATCCCTCTGTCCGCCGAAGGT CTTCGGCCGCGGCAGCACCGGTTCCTCCGTCATCCTCATCATCATCGTCAGCCTCATACACCACGGAGCAGGTTTCAATT ATCAGGGAAATTAAGAGGAAGAAGAACTACTACGAGATTCTAGGTTTAGAGAAGAGTTGCACCGTTGAGGACGTGCGGAA ATCCTATAGAAAGCTCTCTCTGAAGGTCCATCCAGACAAGAACAAAGCCCCCGGCGCTGAGGAAGCGTTCAAGGCGGTGT CGAAGGCGTTTCAGTGTCTAGGCAATGAGGAGAGCAAGAGGAAGTATGATCTTTCCGGAGAAGATGAATCTGTCTATGAG AGGCGTGCTGCAGCGAGGCCGGGTCCGGGGGCGGCGAGGGCTTATAATGGCTACTATGAGGCTGATTTTGATGCTGATGA GATATTCAGGAATTTCTTCTTTGGAGGGATGCGTCCTACAGCAACAGCTAGCTTTGGAGGGTTTAGTTTTGGACCTGGGA TGGGTCACAGGCATGCTGATAATGATAATCATGGCTCTGGTGGTGGCTTCAATGCACGCGCTTTGATTCAATTGTTTCCG GTCTTGCTTATTTTACTCATTAACTTTTTGCCCTCATCGGAACCAATCTATACACTTTCTCAAAGCTACCCTTATGAGCA TAGAGTTACTACACCTAGGGGTGTTAACTACTATGTTAAGTCCACAAAGTTTGCTCAGGATTATCCTGAGGGTACCCGTG AGCGTGAGACGGTTGAGGACAAGGTTGAGAGGGAGTACTTCGGCATCCTTCGCCAGAACTGTCAGTTTGAGTTGCAGCGT CGCCAGTGGGGCTATATCAAAGAAACTCCACACTGTGATATTCTCCGGAAATATGAGTTGGTAAACTAATATGTTTGCTT CATGGTCTTACTTTTATTGTCTTTTGTCTTTTTTGAGGTAGATTTAGATTTACCTGCCGTGTGATATTATTATAGAATGT ACAATTTATTTATCACCCTGATACTAATGAAGCAGTTCATAATAAACCTCTTCATTCGGACTGTTAGCACTCAATTTGAA GCAAATATCTCTCGAACTTAGAAGAATCATGTTACCAGAGATATGTTTGCATTGCCTCACTTTTGTACCAAATTGTTGAT GTGTATTTATTTATATTCAACTGCAGTGAGTGGTTCTTCATGTTTTGACTGATAGTCCTGTTGGATTTATTGCTGACTTG CTGCAAATGGGTGAGTTTTGTGTATTGAGCTATAAATATGATGAATGGATGAAGAGAATGGTGGATCAACATCAGTCCTA GGTATCCTGTCAAAAAGAAAAAAACATTAATCGTAGGTAGAGAAAGATAGAGGGATCAGCTCAATACTTCCATGATTTCC GAAATACTGTTCAAATTTTAAAGGGTGCCGAACAATTTTTAACGCAAGATTAAGGGGAGCCATGGTGCAATTGATATTTA TTTAAATAGCTGGTTAGTCTTCTTGTCTTTCTTTACTCTGGCATAGAGTTATGGAGGGATGGCAATGAAGATTCAATAAA GATCGGTGTACACTGTGAATGTATACCACTATAGAGAGATAAGTGATAGATATGATATGTGATGTGATGTGACTCGAGGT GAGAGATAGAGTACTGAAAAAAAGTGCTCCAATGTGTATGAAATGTTATGTGGTACACTTATCATTATCTTTGATTTGAA AATGAAAGCCAAAATTGTGGAATCATTTGTGTTTACAGTGGTATGATATAGCTTCCCTATCATGCCTATCTATCAGCGTT GATATAATGTTTGTTAACTGCTTGGATTTAATTTTAAGAATGTTATGTTGATCTTACTATGAGCTGATCTGACACTGCCT CGGGTAGACCTTGCTTGAGATATTATGGACACCCATTGTGTGTGTACTTCCATGTTGATATTAGTTAACGTCTAGATACT TTGTTTTAGATTTCTTTTCGTTGAATCAATTGATTGTTTGGTGTTGCATTTGATATCTATTGTATGTTGCGGGTTTGTCT ACGGTGCACAAGTTTTTTGTTGTGTAAAGTTACACAAGGAAGGAGTGAACCGGTTGCAG
CDS sequence (LotjaGi1g1v0200300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGGAACAAGGACGATGCGCTCAAGTGTTTCAGAATCGCCAAAGAGGCGTTAGAAAGCGGCGATCGGTCACGCGC GTTGAAATTCGTGAGCAAAGCTCGCCGTCTCGACCCCACTCTGCCCGTCGACGATCTATTGACGGCGATAGGGGGCGGCG GCGGCGCAGGCGACAATCCCACCGAAGCAGCTGCCGAGCCGGGGAAGCCCGCTGCTGATAATCCCTCTGTCCGCCGAAGG TCTTCGGCCGCGGCAGCACCGGTTCCTCCGTCATCCTCATCATCATCGTCAGCCTCATACACCACGGAGCAGGTTTCAAT TATCAGGGAAATTAAGAGGAAGAAGAACTACTACGAGATTCTAGGTTTAGAGAAGAGTTGCACCGTTGAGGACGTGCGGA AATCCTATAGAAAGCTCTCTCTGAAGGTCCATCCAGACAAGAACAAAGCCCCCGGCGCTGAGGAAGCGTTCAAGGCGGTG TCGAAGGCGTTTCAGTGTCTAGGCAATGAGGAGAGCAAGAGGAAGTATGATCTTTCCGGAGAAGATGAATCTGTCTATGA GAGGCGTGCTGCAGCGAGGCCGGGTCCGGGGGCGGCGAGGGCTTATAATGGCTACTATGAGGCTGATTTTGATGCTGATG AGATATTCAGGAATTTCTTCTTTGGAGGGATGCGTCCTACAGCAACAGCTAGCTTTGGAGGGTTTAGTTTTGGACCTGGG ATGGGTCACAGGCATGCTGATAATGATAATCATGGCTCTGGTGGTGGCTTCAATGCACGCGCTTTGATTCAATTGTTTCC GGTCTTGCTTATTTTACTCATTAACTTTTTGCCCTCATCGGAACCAATCTATACACTTTCTCAAAGCTACCCTTATGAGC ATAGAGTTACTACACCTAGGGGTGTTAACTACTATGTTAAGTCCACAAAGTTTGCTCAGGATTATCCTGAGGGTACCCGT GAGCGTGAGACGGTTGAGGACAAGGTTGAGAGGGAGTACTTCGGCATCCTTCGCCAGAACTGTCAGTTTGAGTTGCAGCG TCGCCAGTGGGGCTATATCAAAGAAACTCCACACTGTGATATTCTCCGGAAATATGAGTTGGTAAACTAA
Protein sequence (LotjaGi1g1v0200300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGNKDDALKCFRIAKEALESGDRSRALKFVSKARRLDPTLPVDDLLTAIGGGGGAGDNPTEAAAEPGKPAADNPSVRRR SSAAAAPVPPSSSSSSSASYTTEQVSIIREIKRKKNYYEILGLEKSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAV SKAFQCLGNEESKRKYDLSGEDESVYERRAAARPGPGAARAYNGYYEADFDADEIFRNFFFGGMRPTATASFGGFSFGPG MGHRHADNDNHGSGGGFNARALIQLFPVLLILLINFLPSSEPIYTLSQSYPYEHRVTTPRGVNYYVKSTKFAQDYPEGTR ERETVEDKVEREYFGILRQNCQFELQRRQWGYIKETPHCDILRKYELVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 367 | 367 | 2.2E-145 | – | |
| PANTHER | 1 | 367 | 367 | 2.2E-145 | – | |
| MobiDBLite | 44 | 100 | 57 | - | – | |
| MobiDBLite | 86 | 100 | 15 | - | – | |
| SUPERFAMILY | 87 | 176 | 90 | 9.42E-25 | ||
| Gene3D | 112 | 232 | 121 | 6.4E-27 | ||
| SMART | 115 | 172 | 58 | 1.3E-24 | ||
| CDD | 116 | 169 | 54 | 2.88297E-19 | ||
| Pfam | 116 | 177 | 62 | 9.7E-22 | ||
| ProSiteProfiles | 116 | 180 | 65 | 18.882 | ||
| PRINTS | 118 | 136 | 19 | 1.4E-14 | ||
| PRINTS | 136 | 151 | 16 | 1.4E-14 | ||
| PRINTS | 152 | 172 | 21 | 1.4E-14 | ||
| ProSitePatterns | 157 | 176 | 20 | - | ||
| Pfam | 279 | 349 | 71 | 1.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0200300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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