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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0204000 |
| Transcript ID | LotjaGi1g1v0204000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein DENND6A; TAIR: AT1G73930.1 polarity axis stabilization protein; Swiss-Prot: sp|Q8IWF6|DEN6A_HUMAN Protein DENND6A; TrEMBL-Plants: tr|K7KK42|K7KK42_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0204000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:43843179..43850385) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTAGGTCTCCTTCATTTTCAGTGAAAACGGAACTTAGTCCGAGTGTTGTTGACTCGGAATCATTGCAAAGATGGGT TGTTGCTTTTTGTGCTATAAGGTTTGATCTCGAGCAAGGACAGCTCGTCGAAGAGTGTTACCCACAGGGATGTCTTTCCC ACGACGAAGAGCTTGAAATCGCTTACAGTTCCTTCCCTGATTCCGTTTCGCAGAACCAGAACAGGTCCAGCATTCATGAT TGTATTTTCTTTTTCCGAATTCGCAGGCGCAGCAGCAATGCCAATGGTTCTCAACCTGCCAAGGATGCTACTGATGATTG TACCGATGGGCCAGAATACATGTATGGTTATGTGTTTAACAGGCAGAGACATGATGAGAGGTTGAAGCGCGGCGGGGAGC AGAAGTCTGTGGTGATCTTGTCTCGCAGTCCTTATTCGAGTGTGTTTAGACCATTGTTGCAAATTGTTGGTCCTTTGTTT TTCGACATTGGTAAGAAAGCACTGGAGCACATTGCTGCTTATGTTTCAAAATGGCCGGCTCCTGTTCCTGGCAAGGTGAT GGATCTTCCCATTGGAAATGCTACTCTTAAAGTGAACTTGCCACCTGCTCTTAGTTTGCCTGTAGAAAGTGGAGTTTCTT TTGAAGAGCCTGCTTCTTCTGTGGCACCTTTTCTTGCTAATAATAATAACCAGTCTGTCCCACAAGGTCTTTTTCATGAT TCAGATCTTTTCGGCTCGTTCCGGGGCCTTCTGTTGCAGCTCTGGCTGTTATGGGAGTTGTTGATTGTTGGTGAGCCCAT GCTCATCATTGCCCCAACACCTCCCCAGTGTTGTGAGGCTGTTGCCAGTCTTGTGAGTTTGGTTGCACCATTACTTTGCA GTCTTGACTTCCGGCCTTATTTTACCATACATGACCCTGTGTTTGCACACTTAAACTCAATTCAAGAAGGTGAAGCTTTC CCTCCAATTATTTTAGGGGTTACAAACCTTTTCTTCCTCAAAGCTCTCCGGAATATTCCGCACATTGTCTCAGTCGGAAG CCCTCCTCCTAATTCAAACAGGGTTGCCCTTTCAGCTAGGTCTACTGGCAGAATTTCTGGTAGTCCTGAAGGTCTTGGGT TTCAACAATTATCCCTGAAGAAGTTTTCTCCTTCAAGTTTATTGAGTGCGGTTAAGCTGCGAAGAGATGGTCCTCTTTGT CTCATGACAGAACATAGGGAAGCCATTTGGAGTACCTATTCTGCAATAACTAAGCCAGATACTTCTATCTTAAATAGGCT TATAGATGCTGGGGTGTCACCAAGAGTAGAGGAGTCAATGTCTGTTGTGAATAATGAGATATTACGTAGACACTTCTTGG AGCTCACAACAAATTTTTTGGCACCCTTTTCCCCATATTTTAGGACTACAACACCATTAGAAGGATCTTCTCCTTATGTA GAGCCTCCTTCCCTACCTCCATTTAATGCCAGTGAGTTTCTTGCAAGTTTATCTGCAAGAGGTCCAGGGAAATTCTTATT AAAGCGAATGAGGTCTAACTGGCTTGACTTATACAGGTAGTAGCTTTGTTTACCTTATTTGTTGTGTTTTTTCATTTGCA ATGCTACCAACCTCTTCTTATTATAATATTTTAATTATAAACTTTGCACTAAACATGGAGTTCTTTACTAATTATATTCC TAATCTTCACATAATTTGCATGAATGTTCTCTTCAGGCGATTCCTGAATGGACCCAACTTTATGCCATGGTTTCAGAGAA GGCGTGCTGCTGCCGAACAAGAACAAGATAGATTGTGGAGGCAAGCAAGAATGAAAACTGACATAGAACAGCTTATTTCT AAATTGTCTGAGTTGGAAATAGTGGATTCCTTCAATGTTATAGAGAGACTTCTCCTCAGAGAAGTGCAGGTAATCTGCTC TCCTAGGGTCCTCAGATAATTTTATGCCTTACGATAACATGATAAACTGAGTTGTGGTTAGTGTTTTATTGGGACTTCAT TGTTTACTCTGTGTATGTGGTTTTTGATCCTGTTAGTTAAACAAATGATCTCATCGAAAGTCAACTAATATTGTGTTCTG ATGCTCAAGTCAAGACAGAAATATTTGATAACTGTGAGATCTCTCCCAATTCTGTTTTTAGATTTAAAAATATAATCAAA TATTGATCTCCCGCTAGCAGTAAAGAATTAACTTCCATCCATATATGTCCTTGTATTGGTGTGTAGGTTTTAGAGTATTC CATTGACCAGATTGGGCTGTTGTCTATGAATTTCTGTTTATAATCTGGGGACATTGGAATAACTGGATTTTCAATTTTCA ATTTTCAATTTTCCTAAAACAATCTTATATTTAAACAGGGTTTTTATAGGCCTAATTTATTTATTATTTTGGCTGTAAGG AGTTAAGTTCAAAATTCTATATAAAAGAATTACATCTCCATGTAGTTTTTATTCCTTTCTTATTGGAGGATGGGGATCTA TTTTGATTCTTAGAGTAAGTGGAGCCCAAAATTTAGTTAGAGGGGACACTACTGAAGGGGTTATTTGGAAGTTTGATTCA TATTTTGGGGGTTATCAACTAAATATATAAATGACTAAAATGAGTACATAAAAAATTGCAGAAGAGGGAGAGGGGCATGA GTATTCCTTCACCTCTGGTTCTTAGTATCACTTAGATATGACTTGAATAAAACTGGAATTATCATATTTTTGAAGTGTGT AGAAACTCAAAAGATATGAGATTTTACTTGTTAAGATAGACTATTAGCTAGATTTAACCTATGATAAGATATTATTGTTA TGCTACATTGGTTATTGTTTCATACTTGTTATTAAGATAAAATACCCATGAATTTACCTGTTGACTTTCCTTTACTGCCC TTTAATTTTCCTTCTGTTGAAGAGACTGTAACACTGGTATCTGTGCTGTGGAACCATTGTAGTAAGGAGATGATTTGTCC CATGATTCCCATTTCATCCCGTTTGTCTTGTTGGAGCGTAAAGTGGTCATTTCTCAGTCTAATGTTGATATGTGCTCTTT GTTAGGTACCAGAAAAAAGTAGAGAAGGAAAAGAAATGAAATGTGTTTGTATTAGAATAGTTCTGGAATTCTGAGATGAA CTCAGGTATCCAATTTAGGGAATTAGACCAAGAAGAAAGAAAAAACAGATATCAGGCAATTTAGAGAGTGTCTATTCTCT CCCATTTCTAGCCTACCTTCCCCTCCCCCCTTTTCCCACATTTATACACCATCTTTCTCTCTCATTCACAACCCAGCTGC CAGCTCAGCAATCAGTTAGGCTCTCCCTCCCTGTGTTGATTCGGTGTAGCGTACCTCCTCCGCTATGGATAATTATGGGA TCGGTCGAGCTCCGACTATTAGTGAAGGGGTTGTCGACGGGACGCTGCTATTGCCTTGGTCCTTCATGAGGTTTTTCATT TCCTTTCCGCCCTTACGTAAACCTTAGTGAGTGATGTTGGGCCTTGCAACTGGGTCTGTAACATCTCTCCCTCCTTCAAG AATCACCTTTGTCCTCAAGGTCAAACCGTGAAAATTATTCCTGAATTCTTTCCAATGATTCCCAGGAATTCTCATATTCG GGAAGTGTCTGTATAAGGGAAGCTAATGCTAAGAAGTGAGCATACTTCCTTAGCCTACCCATCCCCACAAGAATATGGGT GGAAGCCACTTGTAATATCTGAAACAAAATACCACCAGGATCCCACTGTTTAAAACATGACAATCCCTAGACAAATGAGA TGCCATAGTGTCCATTTGAACCAACATGCAAACCCTTATGCTCCTGCAAATTATGCCCTGTAACCAGTCCTTGTGATTCA ACCATAGAACCTAGAGTCGATTTGAAAACCTGTTCAGGCTGCACTTGCAGCTCATTCTCGGCTAAAAGCATAGGGAAAAG ATGTTGCACCTGTTGTAGAGCTACCCAGTCCTTCTTCTTCAGCTTATACTACACCCAACCAATGCTTCTTTTCACCTTAA GAAGTCCATAAAAATTGGTATTAAAATTCTGATTGGATGTCTTATCTAATGACCTTGGTTCATAGGGTTGCAACTTCATG TGACCCTGACAGGGCAATGGTTCCAAATCTGTTCATGTCCCCAGCTCCGCATATGGATATTAATACCTTGGAAAGTGCAG TTTCTTAATTCCCGTTCATTAAAACAGTAGGATGATACAAGTAACGACCTCTTGCTCACGGGTCAGAGGTTCTGGTACTT GATAAAACTCCAAACTACAACCTGGTTTCCCCTGCTGTAAGCATGACACTGCCATTGTATCTGAAGTGTTGGGTGAGCGT TGGATTTTCTGCATGTTTGCAATTGCGAACAGAAAAGAAACGCAGGCACTTACAAAATTCCTTCCTTTGAAAGGCTTATT TCCTTTACTTACTATTGGGCCATGGTCTATTGCGCCAAACAATAAGCTCAGTATCTTCCGTTTTATTCTGCCAAAGCAAT CAGAAGTTTGTAAAGCCATTTATGGGTTGCACAACCACTTTTCTATTGGGCCAGGCCTGTCAAGGTGAAAGAGTGACCCC ATCTTTCTCATTTCCATGTTGCCCATTCACTTGCCTTTCTGCTGTTGCGTAGTGTGCACTGCCGGACCAACACCATGGTC TTCTGGTGGCAGCCGCTCAATCTTCTTCACTTTCCTATCTATTGCCCCCTTCACTGCCCAAGCATCATAATTAGGCGGCT CCGATGGTGATTGTTGTTTAACTAGTGTGTTTAGCATCCCTCCTGCTGCCCCTCCTCTTGATCCCTCAAGAACGTAGCAG TTTTGAAGTTGCATTCGCTTCGTGATCATCGCTTCCGCTGCAACCTTTTTGTTACTTTTCCCTATCCCTAAAGCACCGCC TCCTTTGCACCACTGATCACATTGATTAAACTTGTTGGCTTCTTTGCACCCATACCCATCCACTTCCCTGTTTGTTGCCT TGAATTTTCTTGCTTCATCTTCATGAGTTTCTCCTCGACCCGACCCCCACAGTTCATCTTTCCTTCTTGATTGCCTTTTC CTGTGTTCGTTGCATCGGACAAATGCAATCGAATACGTTTTCTGGGAGACTGGCCTCGATTATGTCTTCCACTTATCAGG AATAGCTGGCGAAGTTCATCAAATTGCATTTGGTTTTATGGCCAAAATTCTTGAATGTCGCTCCAGACCTTCAACCCTCG ACTCCATTGCAATGCGTGTGTTAACCATTCAAGCTTCTTGATTGATCCAGGAGCTTTGATACCAAATACTGTGCCAGAGA AAAGTTGAGAAGGAAAAAAATTGAAATATGTTTGTATTAGAATATTTCAGGAATTCTGAGATGAACTCAGGTTTCCAGTT TAGGGAATAACACCAAGAAGAAAGAAAAACAGATATCAGGCAATTTAGAGAGTGCATGTCCCAGTTCTTGGCTACCTTCC CCTCTCCCCTTTTCCAACATTTATACACCATCTTTCTTTCTTTCTCATTCACAACCCACATGGTTACAACAGAGATCCAC TACCCTGCTGCCAGCTCAGCACTCAGTTAGGCTCTCCCTCCCTGTGTTGATCCGGAGCAGCGGACCTCCTCCTCCTCCTC CTTACCTAAACCTTAGTGATTTTGGGCTTTGCAGTTGGGTCTGCAACATACATGGAAAAAATTGCACCTTATAAATTGGT CATCTCTTTCTTTGGTTGATGCTTGCAATTACGTCATTGGTTTTACTATGTGTAATTATCCCTTGCAGTTTGTGCCAAGT ACTTTATATGGATATGGGATATTATGAGTCAAAACTGAAGGAACTTTTTCTAGCTGGACTTGTGATCGTTATGAAGGGTG AACAAGTGTATTGCTGTCTTCTTGTTGTTTAATGTGAATTATATTGAGCCCTGCCTTGATGCTTCATTTGTAAATTCAAT TACTGCTATCATACTGGTTCATAGTTCTTCATAAGTTCAATTCTAAAGCCTTCACTGTTACAGTGTCAGGTGAAACGTGC ACTTTGCTTAGTACTTCTTCTGAAAACTTGTAGGACTGGTTTTGCATAACTATAGGTAAGGACATAGAGGAGCCAACCCG AGTTGAATGCTTGTTGCCTTGTTCTCATGCTTCGTTCAGTTAACAACCAAGGGGCTGGATTTTCACTTTTAACCGAACTG AAGTTTATGCCCAAGCTTGAATCAACCTTATCAGTTCATGAACTGTATTTGTATATACATGCAATTATGAATTAAACTCA ATAAGCATGAACTTATTTGAAGTCTGAAGAGTTTGCAACTTGCAAGTTTGTAATGTGCTAGAATTAAAGCACAGAGATTT GCTACTCACATCCCTTAGCCAAATATGTGATAGTCTACTTAACCTGGTGATATAGTGCAATTTCATGTCATGACTCATTT AGGGTATGATTCTAATGATTATATGCCACCGATTAATATAATGATGAAAGCAGTCTTCTGTATGAAATTTTAATAAAATA TCATTAGAAAGATCAGTAGCGTAGAATGCTGAAGACCTTTGGAGCTAGCTAAGAATAATTTGATTTGATAGCATTGCACA TATTGATAGATTGCATGCTTTTTATGATGTGAGACACACTCTTGTTTAAGTGTTTCAAGAATGGGAATATCAGAAAATGT TTCATAGTTATGTAATGCATTGTTGCATTCTTTATCTTATTTTTTCCTGAACCTTTTGGTTGTATATTTTTCGAGGTGAT GTAAGCTATGTGAAATTGGATGAAATTTCTTTCCTTATCGATATGAAAGCTGACCACATGTATTTTCATTAGGCAAGCAT TCCATTACTTACTCTTGAACCGAGGTCCATGAATTCTTAATTGCCCTTTTACAATACATGATGTGCAAGGTAGCACTTAA GTATTTGTTGCAAAATGTTCTACAGGATACGATACTTCTAATCATAGGATTGCTTACGCTGTAAAATATATTCAGTGCTT TAATCTATGTTAAATGCTATTATCAGGTGCAACAATCTGGAAAGGGTGGTGTTGATTCCATGGAAATTTGTCAGAAACTT AGGGGGACCTTCAGGCAGTTTTTAATGTTCTTTCAAAGGACATGCAACAAGTTATGCTATCAAATCCCCAAAGAGCATCC CTTCTTCAAGGAAGTCCAGAATTAACAAAACTTCCGGGATGTCCTCTCATACAAGTTGCGGTGGTGTCGTCTACATCACC GAGGTAA
CDS sequence (LotjaGi1g1v0204000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGGTCTCCTTCATTTTCAGTGAAAACGGAACTTAGTCCGAGTGTTGTTGACTCGGAATCATTGCAAAGATGGGT TGTTGCTTTTTGTGCTATAAGGTTTGATCTCGAGCAAGGACAGCTCGTCGAAGAGTGTTACCCACAGGGATGTCTTTCCC ACGACGAAGAGCTTGAAATCGCTTACAGTTCCTTCCCTGATTCCGTTTCGCAGAACCAGAACAGGTCCAGCATTCATGAT TGTATTTTCTTTTTCCGAATTCGCAGGCGCAGCAGCAATGCCAATGGTTCTCAACCTGCCAAGGATGCTACTGATGATTG TACCGATGGGCCAGAATACATGTATGGTTATGTGTTTAACAGGCAGAGACATGATGAGAGGTTGAAGCGCGGCGGGGAGC AGAAGTCTGTGGTGATCTTGTCTCGCAGTCCTTATTCGAGTGTGTTTAGACCATTGTTGCAAATTGTTGGTCCTTTGTTT TTCGACATTGGTAAGAAAGCACTGGAGCACATTGCTGCTTATGTTTCAAAATGGCCGGCTCCTGTTCCTGGCAAGGTGAT GGATCTTCCCATTGGAAATGCTACTCTTAAAGTGAACTTGCCACCTGCTCTTAGTTTGCCTGTAGAAAGTGGAGTTTCTT TTGAAGAGCCTGCTTCTTCTGTGGCACCTTTTCTTGCTAATAATAATAACCAGTCTGTCCCACAAGGTCTTTTTCATGAT TCAGATCTTTTCGGCTCGTTCCGGGGCCTTCTGTTGCAGCTCTGGCTGTTATGGGAGTTGTTGATTGTTGGTGAGCCCAT GCTCATCATTGCCCCAACACCTCCCCAGTGTTGTGAGGCTGTTGCCAGTCTTGTGAGTTTGGTTGCACCATTACTTTGCA GTCTTGACTTCCGGCCTTATTTTACCATACATGACCCTGTGTTTGCACACTTAAACTCAATTCAAGAAGGTGAAGCTTTC CCTCCAATTATTTTAGGGGTTACAAACCTTTTCTTCCTCAAAGCTCTCCGGAATATTCCGCACATTGTCTCAGTCGGAAG CCCTCCTCCTAATTCAAACAGGGTTGCCCTTTCAGCTAGGTCTACTGGCAGAATTTCTGGTAGTCCTGAAGGTCTTGGGT TTCAACAATTATCCCTGAAGAAGTTTTCTCCTTCAAGTTTATTGAGTGCGGTTAAGCTGCGAAGAGATGGTCCTCTTTGT CTCATGACAGAACATAGGGAAGCCATTTGGAGTACCTATTCTGCAATAACTAAGCCAGATACTTCTATCTTAAATAGGCT TATAGATGCTGGGGTGTCACCAAGAGTAGAGGAGTCAATGTCTGTTGTGAATAATGAGATATTACGTAGACACTTCTTGG AGCTCACAACAAATTTTTTGGCACCCTTTTCCCCATATTTTAGGACTACAACACCATTAGAAGGATCTTCTCCTTATGTA GAGCCTCCTTCCCTACCTCCATTTAATGCCAGTGAGTTTCTTGCAAGTTTATCTGCAAGAGGTCCAGGGAAATTCTTATT AAAGCGAATGAGGTCTAACTGGCTTGACTTATACAGGCGATTCCTGAATGGACCCAACTTTATGCCATGGTTTCAGAGAA GGCGTGCTGCTGCCGAACAAGAACAAGATAGATTGTGGAGGCAAGCAAGAATGAAAACTGACATAGAACAGCTTATTTCT AAATTGTCTGAGTTGGAAATAGTGGATTCCTTCAATGTTATAGAGAGACTTCTCCTCAGAGAAGTGCAGGTGCAACAATC TGGAAAGGGTGGTGTTGATTCCATGGAAATTTGTCAGAAACTTAGGGGGACCTTCAGGCAGTTTTTAATGTTCTTTCAAA GGACATGCAACAAGTTATGCTATCAAATCCCCAAAGAGCATCCCTTCTTCAAGGAAGTCCAGAATTAA
Protein sequence (LotjaGi1g1v0204000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRSPSFSVKTELSPSVVDSESLQRWVVAFCAIRFDLEQGQLVEECYPQGCLSHDEELEIAYSSFPDSVSQNQNRSSIHD CIFFFRIRRRSSNANGSQPAKDATDDCTDGPEYMYGYVFNRQRHDERLKRGGEQKSVVILSRSPYSSVFRPLLQIVGPLF FDIGKKALEHIAAYVSKWPAPVPGKVMDLPIGNATLKVNLPPALSLPVESGVSFEEPASSVAPFLANNNNQSVPQGLFHD SDLFGSFRGLLLQLWLLWELLIVGEPMLIIAPTPPQCCEAVASLVSLVAPLLCSLDFRPYFTIHDPVFAHLNSIQEGEAF PPIILGVTNLFFLKALRNIPHIVSVGSPPPNSNRVALSARSTGRISGSPEGLGFQQLSLKKFSPSSLLSAVKLRRDGPLC LMTEHREAIWSTYSAITKPDTSILNRLIDAGVSPRVEESMSVVNNEILRRHFLELTTNFLAPFSPYFRTTTPLEGSSPYV EPPSLPPFNASEFLASLSARGPGKFLLKRMRSNWLDLYRRFLNGPNFMPWFQRRRAAAEQEQDRLWRQARMKTDIEQLIS KLSELEIVDSFNVIERLLLREVQVQQSGKGGVDSMEICQKLRGTFRQFLMFFQRTCNKLCYQIPKEHPFFKEVQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 608 | 608 | 1.1E-239 | – | |
| PANTHER | 1 | 608 | 608 | 1.1E-239 | ||
| ProSiteProfiles | 28 | 532 | 505 | 31.383 | ||
| Pfam | 250 | 342 | 93 | 5.5E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rab guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0204000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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