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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0204800 |
| Transcript ID | LotjaGi1g1v0204800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation initiation factor eIF-2B delta subunit; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|I1KD70|I1KD70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0204800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44249933..44256193) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACCCACGAGAAATCCCAAAATTGGAAAAAGAAATAAAAATTGACATGCGCGTTATTACTGCTTGTGCTACTGTTTG TTACTTGTCTTTACTCTTTACCCTAGACAGACAGAGCTCCGCACCTTTTCTTTTCACACCAAAACTTATTCATAATCTTC CACGCGCCTCGCTTCCATGGACGGACGACGCGCCGTCATCGACCCCAAGGTCAGGCGCGTCGGTTTCGCCGCTCCGCCGC CTCAAAACGACTCGGCCTCCGCCTCCCCCGTCACGATACCGCTGCCTCGTCATCTTTCCGAGCGAACAGCCGCCGTCCCC GTCCCCGAGTCAGGGTTCCGCCGCCAGCCATCCGGGGAGTGGGTCCCAGTCGGGAGCTACAATCCCTCCGAATCGCTGCT CGGAACATCGCCGACGGTTACGCCTTCTTCTAATGGTGCCGGGCTTGTAGACGGAGAGTTCTCTGAGGATCTCTCCGGTG ACAGTGGATTCCGTCCCAGTGACTCGAGCTTCCCCTGCCGAGGGTTTGATTTGCCGGCTGTGAAGCCAGCGGAGAAAAGC TTCGCTGCGGCGGAGGCGATTGTGAAAACTCATTCTGGTGGAACTACTGGTATATATATTGTGCTTGTTGAATTAAGTTT CATGAATTTGATTGGCGATGCTTGTTGATGTGTGACTAGCAGACTGATAAATCTGAATGTGGATTGAGAACTATTCTCAC ATATCAATGATATATAATTATGTCAAAATTTGTGTATGTTCATAGAGTTTCATCTACTTGGTGTTTGTTTGAATACTAGT TAAGTTAATGTGAAAACACATTCATCGAGTCTGTCCATTTTATGCCTCGAGGTAGCGCCACTTCATATCCAAATTCACCC TTAATATACTAGAGTCTAAAAAAGAGATAGACATAAAATACTATCATGTTAAAGTTTGTGATTATTGATAGGGTCTTTTC TACTTAATAGACAGTATAAGATGGATATAACATTTCATCGTGTGATGTGAATACACTGATACTTAATCATATGCAACTAA CACAGATTGAGGCACTGACTTCTGATTCTGACCTGAATATGCTTAAGGCCCTCACCAGGACTACACTAGGACTAAATGCT CGCCATCTAACACGAACACTTATACAAACAGTCATTGGGCTTTAAATGTAAACAATACACAAACCTGCTGCACCTTGTGC TATAAAATATAGTATAATTTGGTAAATTAGGGTGGCAGTAATTGAACTCCTTAGTACTTGGTCATAGAGGCTTCAAGCAT GTCAAAGAACAACTCCAAGTAAAGCTTAATCCGTATGGTACAGGGTTAGGACTAGTCATATATCTCATATGTTCTATAAT ATTCAGTGTTTGCGGTTGAAGTAAGTGTGCTGATTATACAATCATGTTTCTTAATTCTTATGAGGGTTAGTTTGTTACAA AATTAAAGCCTTTTTAACATGTGTGTTTGAGTTAGTATACTGTGTTCATACTTGAGTATGTGAAATGTATTTTAAATGGC ATAAGTGAACTTAGTTCAGAGCAGGTATTTAATCTTGATATGATTGTGAAGTTTGCTAAAATCTTTTTCAAATTTTCTTG TGATAGAAAACTCATGCATTGACTGGACTCTAGGATCAGTTTTTTGACTCTTGATTTTCTACCAGAAGATAAAGTAATAG AAAAATAACCTATAGATTTGTGGAATTAAGAGATTTTCATTTTTCATATGCACGCAGGCAGTAGAACTACATACCTAATT ATTGATTTGTTATGCACAGAGCTGCAGTGGCAGAGGGTTTTTTTTTTTCAAAAACAATTTAGTCAATCCTTTTATTTGCT TATAGTTATGGTTCCTCCAGCTGGAAGGGGCACTTTAAATACCTTGGGTTTCAAATATTCTTTTCTTCAACCAAAGTGGT TTCTGATTTTGCTTCCCACACCTATTCAAGCCCATTTTTCTTCTGATAGATAGCTGATTCTACATAGAATTATTTGTGTG TCTTATTCTTTCACTGTTTCACATATTATTGGTGAACAAAGATTCAAGCCCGTTTTCCGTCTGATAGATCGCTGATTCTA CATAGAATTATTTGTGTCTTATTCTTTCACATATTAATGGTGAACAAAAATCCTGCAGAAAAGAGGGAAGGGACTGTCAA AGACGTCAGCCGTGATGTGCCAGCAACGTCAAAGCCCCTGAAAGAGAAAACTACAAAGGCCGAGAGACGAGCCTTGCAGG AGGCACAAAGAGCTGCAAAAGCTGCTGCGAAAGGTTGTAGTGAACTGGTGATTAAAATTCATTCTCTCCCTTGATTTTAT CTGATGATAAGATAAAGCTTCTTGATTCAATATATGATAAATAATTCATAATTTAATGCCTATATTTGTCTATTGATTTC ATGTATATATATTCCTAGAAATTTGTGTTATAGCTTTTCTCCCATTCTAAATGTTCACTACTTCCTGTTATATTAGAGAC TTCTATTTCCTTATTGGATAAAACTTTATCTGGTTCCTCATAGTTTTGCAATCAAGTTCTCAAATCAAACAATGTCATGT GTTGTTATTTTTCCAATATTAAATAGCATTCATTAAGAATAAGCTATTGAATTCTAAAAGAGATCCATATGACATTATTG GGTTTGAGAGCTTGATGACAAGGATATAAAGAATTTGATCTAAGTTTTTACCTTCCCTTATTGGATATTAGATGAAATGT ATAGATTATTAAATCAATCTTGGTTCATTCTTTGAACATGGCTGGGTAAATGAAACTTGCATAATACAATAATTTTTATG AATTCTAAATTAATGTTAATTTTTTCTTTGAGCAGTCCTGGTGGCTTGGGTTTTCTTTTATTTGGTAGTGTCTTTTCTCT TCTCTTTTTTTTTTCATGTAAGTCTTGTTGAAATGAGGTAAAGTTGTTTTGATTGCATTATAATTCCTTCAGTTGTGTAA AATTTGGCCTTGAAAGAAAGAATATGGAGTTAAATGTCTTCGTAGATGGTTCTTAACGTGTCAAATAGTTCATTTGCTTG TTGTTGATATCCTGCAATTCCTTGCCATTCATATTATACTTGTAATTTGTGTTTATGGTTACTGTTGTTCTTTATCCAGC TGATGGAAGTACATCAGTTACTGAATCCGGCAGAGCAGCAGCCCCAGGTAAAAGTATGAAGCAGACTTCACGAAAGAAAG AAGGTACTCCTGTTACATCATCAGTGGCTACTGATAAGAAATCTGGAGATCGTGCATTAGAAAAAGAGAGGAAGAAAGAT GCTCCTCCTCCACGAATGCAATTCGATGACAAGACTAGAGTGGAAAAAGCTAAAAGGCGTGCAGTAGTCAATCAAACTGA AGCTAGAAACAGAGTTGAATTATTCCGGCATTTGCCTCAATACGAACATGGGACTCAGCTTCCTGAACTTGAGTCAAAGC TTTTCCAACTTGATCCGGTGCATCCTTCTGTTTTCAAGGTACTTTTTTGCAGTTTCATTAGTTTGGTTCAACAAAGTAAT GTAATGGCATCTACATGTCAACAAGGTCGGTCAATTATGTATCTGGAGATGAGTACTAACATAAAAACCAACTTATTCTT TTTAGTTACTATAATTTGTACTCACAAGTTAATTTAACTGCAACAAGAGATCCATCTCCAATTTCTTTGATATTATAACT GTTATTTGTTGTCATTATAATTATGTCTTCAATGCTGAAAAATATATTTGAAAACCTTGAATCAAATAGGTTAACTTCAG CTTTTTGTTCAAGCTTGCATGTAAGTTGTGCATATATGCACATTGTGATGCCAGTGATATTAGTCAGAGGGCTCATGCTA TGGTCTTTTGAATAGAACCAGCATCTTTAGTATTTCATTCCTTCCCATGCAGAAGGACAGAAAACATTATGCCTTTTACA TGACAACCACTGTATCTTTATGCCAATTTAGTTGCTCTTTTTTTTAACTTTCATTCTCAAGCTATGTGTTTTTTAGTCCA TGATTTTTGCATATAAACTTGAGTAAAATGGCAATTTAGATAGGGTGCTCATCAGCTTATTTAATTGTCAGGTTGGATTG CGTTACATGACTGGAGATATATCAGGTGATAATGCTCGTTGTATTGAAATGCTTAAAGCATTTCAGGAAGCCATTATAGA CTACTCCACTCCACCTGAAAAACTCCTTGTTCGAGATTTAACTGCAAAAATCAGTAGTTATGTTTCATTTTTTACCGAAT GCAGGCCACTGTCTGTTAGCATGGGGAATGCAATTAGGTTTGTAAAGAGTCGTATTGCCAAGTTGCCTTTAAATCACACT GAATCTGAGGCAAAAGCAGCTATTTGTTCTGATATTGACCGATTCATTAATGAAAAAATAATTTTTGCTGATAAGGTGAT TGTTGGCCATGCTGTTACTAAGGTTAGGGATGGAGATATTCTTCTCACATATGGATTGTCATGTGTTGTTGAAATGATTC TCTTACATGCCCATGACCTTGGGAAACAGTTCCGAGTTGTGGTGGTAGACTCAAGGCCAAAGCTTGAAGGTCAGGCCTTA CTACGTAGGCTTGTGACCAAAGGCCTAAGTTGTACATACACTCATATAAATGCTGTTTCTTATATCATGCACGAGGTCAC AAAGGTTTTTCTGGGAGCTTCTGCCATTCTGTGCAATGGAACTGTATATTCAAGGGTTGGGACTGCTTGTGTTGCTATGG TGGCTCATGCATTTAATGTTCCTGTATTAATCTGTTGTGAAACTTATAAGTTTCATGAAAGGGTGCAACTTGATTCAATA TGTTCCAATGAACTAGGTAAGTCATAGCATTGGCTTGTTAGTGTGGAATTTTTAGAACATGCTTGATATATGTATTTGGA GGAATGGTTGGGATAGGAATTTATTTGTGCTTCTATCAAGTATTATTATGAAAAAAAAGGGGAATCTTTGTTCCAGCTCT GCCAAGGGAGCTATACATTGTATCTCGAAATCCAGTTGACAACTGAATTTGACATACTTGAAATTGCAAGCAGGTAACCC AGATGCTGTTGCCATGGTTCGTGGAAGAAGGGAGGTCAATTATCTGGACAATTGGACTAGTGAAGACAATTTGCTGCTTC TGAATTTAATGTATGCCTTAGAGATCTGGCTCCTTAAAATAAGGAGAGAACTTTACATGATAAAGTGCAGACTTATAACC ATTGATTAGAAAATCAGTTGTTGTGATTTTAACAAATTTATAATTTGTTATACACATACTTGTATTTTATCATGATCTCA ACTGTTTATTTTCTAATCAATGGTTATTGCGCTAGCACTATCGAGAAGTATAAATCTAACAATGCTTTAGATATTCCATT TGTGTGAACAGCCCCCAAAACTGGATCAACTGATTTTATTTCATTCACAGGTATGATGTTACACCTTCAGATTATATCTC ATCAATTGTTACGGATCATGGAATGGTAAGTTGATTAGTGTGTATACAGTGTGTCACCTACAGGTTATGAATATTTTCGC ATAATTACCCATTTCGTGATCGTTTATCTGTTTTCCTCTTTGCAGATACCTCCTACAAGTGTGCCTGTAATTGTGCGCGA GTATGGACGAGACCACATGATACAAAGATAGACAGAAGTTAGAAAGTGGCTTTAACAGCCCTCTGCCGGTTTTGGTACAT ACAACTTTTCTATAATATACCCGAGGTTTAGTTCAAGTGCCTTTTTCTAATACCTTTAGGCTCCCAACGATTATAAAGAT GCATATTCTTTCAATAGTTTCAAATTCTTTCAAAAGTCCAGGGACACCGGAATTGCAAGCAACTCATAATGAAGCATCGA TTTTTGTTTTTTCCAGATTATTTTCCTGCAACCTTGAGGTTCTGTAGGTGCTAAAATTTTATTTGATATTGTCACTATGT TTGGGTTTCCATTGAACTTAACGCCGATCCATATTTGAGTCAACATGGCAAAATCTTGCATTTTACTATTTACATTGATT CGTTGTGATGTGAAACGGAAAACCAAACTGGCGCTATATTGGCTGTAGTGACAATCAAAGTTCAAGCACTCTACTGAATG GAGATTTATAAAAAAAAAAAGGTTTGTTCTAATATTAGTACGATTATATCATATATCTGGTTTAATTTGAAGTGTATTTA GCTTGAATGTTTTTAAAATAGGAATTGATGAAAGTATTGGTTTATATTTTTTGTTGCATTAAAAATTTTATCGATTAATT TGATGAAAATATGCTGATCTG
CDS sequence (LotjaGi1g1v0204800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGACGACGCGCCGTCATCGACCCCAAGGTCAGGCGCGTCGGTTTCGCCGCTCCGCCGCCTCAAAACGACTCGGC CTCCGCCTCCCCCGTCACGATACCGCTGCCTCGTCATCTTTCCGAGCGAACAGCCGCCGTCCCCGTCCCCGAGTCAGGGT TCCGCCGCCAGCCATCCGGGGAGTGGGTCCCAGTCGGGAGCTACAATCCCTCCGAATCGCTGCTCGGAACATCGCCGACG GTTACGCCTTCTTCTAATGGTGCCGGGCTTGTAGACGGAGAGTTCTCTGAGGATCTCTCCGGTGACAGTGGATTCCGTCC CAGTGACTCGAGCTTCCCCTGCCGAGGGTTTGATTTGCCGGCTGTGAAGCCAGCGGAGAAAAGCTTCGCTGCGGCGGAGG CGATTGTGAAAACTCATTCTGGTGGAACTACTGAAAAGAGGGAAGGGACTGTCAAAGACGTCAGCCGTGATGTGCCAGCA ACGTCAAAGCCCCTGAAAGAGAAAACTACAAAGGCCGAGAGACGAGCCTTGCAGGAGGCACAAAGAGCTGCAAAAGCTGC TGCGAAAGCTGATGGAAGTACATCAGTTACTGAATCCGGCAGAGCAGCAGCCCCAGGTAAAAGTATGAAGCAGACTTCAC GAAAGAAAGAAGGTACTCCTGTTACATCATCAGTGGCTACTGATAAGAAATCTGGAGATCGTGCATTAGAAAAAGAGAGG AAGAAAGATGCTCCTCCTCCACGAATGCAATTCGATGACAAGACTAGAGTGGAAAAAGCTAAAAGGCGTGCAGTAGTCAA TCAAACTGAAGCTAGAAACAGAGTTGAATTATTCCGGCATTTGCCTCAATACGAACATGGGACTCAGCTTCCTGAACTTG AGTCAAAGCTTTTCCAACTTGATCCGGTGCATCCTTCTGTTTTCAAGGTTGGATTGCGTTACATGACTGGAGATATATCA GGTGATAATGCTCGTTGTATTGAAATGCTTAAAGCATTTCAGGAAGCCATTATAGACTACTCCACTCCACCTGAAAAACT CCTTGTTCGAGATTTAACTGCAAAAATCAGTAGTTATGTTTCATTTTTTACCGAATGCAGGCCACTGTCTGTTAGCATGG GGAATGCAATTAGGTTTGTAAAGAGTCGTATTGCCAAGTTGCCTTTAAATCACACTGAATCTGAGGCAAAAGCAGCTATT TGTTCTGATATTGACCGATTCATTAATGAAAAAATAATTTTTGCTGATAAGGTGATTGTTGGCCATGCTGTTACTAAGGT TAGGGATGGAGATATTCTTCTCACATATGGATTGTCATGTGTTGTTGAAATGATTCTCTTACATGCCCATGACCTTGGGA AACAGTTCCGAGTTGTGGTGGTAGACTCAAGGCCAAAGCTTGAAGGTCAGGCCTTACTACGTAGGCTTGTGACCAAAGGC CTAAGTTGTACATACACTCATATAAATGCTGTTTCTTATATCATGCACGAGGTCACAAAGGTTTTTCTGGGAGCTTCTGC CATTCTGTGCAATGGAACTGTATATTCAAGGGTTGGGACTGCTTGTGTTGCTATGGTGGCTCATGCATTTAATGTTCCTG TATTAATCTGTTGTGAAACTTATAAGTTTCATGAAAGGGTGCAACTTGATTCAATATGTTCCAATGAACTAGGTAACCCA GATGCTGTTGCCATGGTTCGTGGAAGAAGGGAGGTCAATTATCTGGACAATTGGACTAGTGAAGACAATTTGCTGCTTCT GAATTTAATGTATGATGTTACACCTTCAGATTATATCTCATCAATTGTTACGGATCATGGAATGATACCTCCTACAAGTG TGCCTGTAATTGTGCGCGAGTATGGACGAGACCACATGATACAAAGATAG
Protein sequence (LotjaGi1g1v0204800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGRRAVIDPKVRRVGFAAPPPQNDSASASPVTIPLPRHLSERTAAVPVPESGFRRQPSGEWVPVGSYNPSESLLGTSPT VTPSSNGAGLVDGEFSEDLSGDSGFRPSDSSFPCRGFDLPAVKPAEKSFAAAEAIVKTHSGGTTEKREGTVKDVSRDVPA TSKPLKEKTTKAERRALQEAQRAAKAAAKADGSTSVTESGRAAAPGKSMKQTSRKKEGTPVTSSVATDKKSGDRALEKER KKDAPPPRMQFDDKTRVEKAKRRAVVNQTEARNRVELFRHLPQYEHGTQLPELESKLFQLDPVHPSVFKVGLRYMTGDIS GDNARCIEMLKAFQEAIIDYSTPPEKLLVRDLTAKISSYVSFFTECRPLSVSMGNAIRFVKSRIAKLPLNHTESEAKAAI CSDIDRFINEKIIFADKVIVGHAVTKVRDGDILLTYGLSCVVEMILLHAHDLGKQFRVVVVDSRPKLEGQALLRRLVTKG LSCTYTHINAVSYIMHEVTKVFLGASAILCNGTVYSRVGTACVAMVAHAFNVPVLICCETYKFHERVQLDSICSNELGNP DAVAMVRGRREVNYLDNWTSEDNLLLLNLMYDVTPSDYISSIVTDHGMIPPTSVPVIVREYGRDHMIQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 113 | 113 | - | – | |
| PANTHER | 1 | 627 | 627 | 0.0 | – | |
| PANTHER | 1 | 627 | 627 | 0.0 | – | |
| MobiDBLite | 64 | 89 | 26 | - | – | |
| MobiDBLite | 138 | 260 | 123 | - | – | |
| MobiDBLite | 140 | 180 | 41 | - | – | |
| MobiDBLite | 215 | 229 | 15 | - | – | |
| MobiDBLite | 230 | 260 | 31 | - | – | |
| SUPERFAMILY | 304 | 621 | 318 | 4.77E-88 | ||
| Pfam | 319 | 611 | 293 | 5.8E-80 | ||
| Gene3D | 422 | 622 | 201 | 3.0E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi1g1v0204800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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