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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR037171
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.715s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0172500.1
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|I1MAJ4|I1MAJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0172500 LjG1.1_chr1 32832909 32834599 +
2 domain predictions
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LotjaGi1g1v0172600.1
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|A0A072VQL3|A0A072VQL3_MEDTR Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase; Found in the gene: LotjaGi1g1v0172600 LjG1.1_chr1 32843356 32845774 +
2 domain predictions
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LotjaGi1g1v0186100.1
n.a. 5-formyltetrahydrofolate cyclo-ligase; TAIR: AT5G13050.1 5-formyltetrahydrofolate cycloligase; Swiss-Prot: sp|Q8L539|5FCL_ARATH 5-formyltetrahydrofolate cyclo-ligase, mitochondrial; TrEMBL-Plants: tr|A0A0B2QHY4|A0A0B2QHY4_GLYSO 5-formyltetrahydrofolate cyclo-ligase; Found in the gene: LotjaGi1g1v0186100 LjG1.1_chr1 36404985 36409815 +
2 domain predictions
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LotjaGi1g1v0204800.1
n.a. Translation initiation factor eIF-2B delta subunit; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|I1KD70|I1KD70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0204800 LjG1.1_chr1 44249933 44256193 +
2 domain predictions
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LotjaGi1g1v0293300.5
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|G7J870|G7J870_MEDTR Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase; Found in the gene: LotjaGi1g1v0293300 LjG1.1_chr1 71162959 71172456 -
2 domain predictions
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LotjaGi1g1v0293300.6
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|G7J870|G7J870_MEDTR Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase; Found in the gene: LotjaGi1g1v0293300 LjG1.1_chr1 71162959 71172456 -
2 domain predictions
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LotjaGi1g1v0293300.7
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|G7J870|G7J870_MEDTR Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase; Found in the gene: LotjaGi1g1v0293300 LjG1.1_chr1 71166757 71172401 -
2 domain predictions
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LotjaGi1g1v0293400_LC.1
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr|A0A151RS78|A0A151RS78_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0293400_LC LjG1.1_chr1 71176874 71179567 -
2 domain predictions
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LotjaGi1g1v0780100.1
n.a. Ribose-5-phosphate isomerase A; TAIR: AT3G04790.1 Ribose 5-phosphate isomerase, type A protein; Swiss-Prot: sp|Q9S726|RPI3_ARATH Probable ribose-5-phosphate isomerase 3, chloroplastic; TrEMBL-Plants: tr|A0A151TXP4|A0A151TXP4_CAJCA Putative ribose-5-phosphate isomerase; Found in the gene: LotjaGi1g1v0780100 LjG1.1_chr1 135190740 135191810 -
2 domain predictions
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LotjaGi1g1v0780100.2
n.a. Ribose-5-phosphate isomerase A; TAIR: AT3G04790.1 Ribose 5-phosphate isomerase, type A protein; Swiss-Prot: sp|Q9S726|RPI3_ARATH Probable ribose-5-phosphate isomerase 3, chloroplastic; TrEMBL-Plants: tr|A0A151TXP4|A0A151TXP4_CAJCA Putative ribose-5-phosphate isomerase; Found in the gene: LotjaGi1g1v0780100 LjG1.1_chr1 135190939 135191781 -
2 domain predictions
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LotjaGi1g1v0799700.1
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT1G53900.1 Eukaryotic translation initiation factor 2B (eIF-2B) family protein; Swiss-Prot: sp|Q54I81|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha; TrEMBL-Plants: tr|D7TZK5|D7TZK5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0799700 LjG1.1_chr1 137026483 137030003 +
2 domain predictions
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LotjaGi2g1v0055800.1
n.a. Translation initiation factor eIF-2B subunit delta; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|I1LX09|I1LX09_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0055800 LjG1.1_chr2 11323253 11330771 +
2 domain predictions
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LotjaGi2g1v0055800.2
n.a. Translation initiation factor eIF-2B subunit delta; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|A0A0B2R8V3|A0A0B2R8V3_GLYSO Translation initiation factor eIF-2B subunit delta; Found in the gene: LotjaGi2g1v0055800 LjG1.1_chr2 11324991 11330109 +
2 domain predictions
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LotjaGi2g1v0128300.1
n.a. 5-formyltetrahydrofolate cyclo-ligase; TAIR: AT1G76730.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9SRE0|5FCLL_ARATH 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212; TrEMBL-Plants: tr|A0A0L9VLB2|A0A0L9VLB2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0128300 LjG1.1_chr2 47032082 47045950 -
2 domain predictions
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LotjaGi2g1v0293100.1
n.a. Glucosamine-6-phosphate deaminase; TAIR: AT1G13700.1 6-phosphogluconolactonase 1; Swiss-Prot: sp|A2YNH4|6PGL2_ORYSI Probable 6-phosphogluconolactonase 2; TrEMBL-Plants: tr|I3SB96|I3SB96_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0293100 LjG1.1_chr2 76735736 76741958 -
2 domain predictions
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LotjaGi3g1v0112200.1
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT3G07300.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta; TrEMBL-Plants: tr|A0A151TRK6|A0A151TRK6_CAJCA Translation initiation factor eIF-2B subunit beta; Found in the gene: LotjaGi3g1v0112200 LjG1.1_chr3 13835483 13843687 +
2 domain predictions
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LotjaGi3g1v0112200.2
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT3G07300.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta; TrEMBL-Plants: tr|A0A151TRK6|A0A151TRK6_CAJCA Translation initiation factor eIF-2B subunit beta; Found in the gene: LotjaGi3g1v0112200 LjG1.1_chr3 13835684 13841590 +
2 domain predictions
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LotjaGi3g1v0112200.3
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT3G07300.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta; TrEMBL-Plants: tr|A0A151TRK6|A0A151TRK6_CAJCA Translation initiation factor eIF-2B subunit beta; Found in the gene: LotjaGi3g1v0112200 LjG1.1_chr3 13835794 13841590 +
2 domain predictions
 –
LotjaGi3g1v0112200.4
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT3G07300.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta; TrEMBL-Plants: tr|A0A151TRK6|A0A151TRK6_CAJCA Translation initiation factor eIF-2B subunit beta; Found in the gene: LotjaGi3g1v0112200 LjG1.1_chr3 13835794 13841590 +
2 domain predictions
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LotjaGi3g1v0408700.1
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT1G53900.3 Eukaryotic translation initiation factor 2B (eIF-2B) family protein; Swiss-Prot: sp|Q54I81|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha; TrEMBL-Plants: tr|G7L962|G7L962_MEDTR Translation initiation factor eIF-2B protein; Found in the gene: LotjaGi3g1v0408700 LjG1.1_chr3 81223377 81225862 +
2 domain predictions
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LotjaGi4g1v0234200_LC.1
n.a. Ribose-5-phosphate isomerase A; TAIR: AT3G04790.1 Ribose 5-phosphate isomerase, type A protein; Swiss-Prot: sp|Q9S726|RPI3_ARATH Probable ribose-5-phosphate isomerase 3, chloroplastic; TrEMBL-Plants: tr|A0A0A0LFJ4|A0A0A0LFJ4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0234200_LC LjG1.1_chr4 54815426 54815956 -
2 domain predictions
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LotjaGi4g1v0262900.1
n.a. Translation initiation factor eIF-2B subunit delta; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|I1MUH1|I1MUH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0262900 LjG1.1_chr4 62572534 62575907 -
2 domain predictions
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LotjaGi5g1v0331100.1
n.a. Ribose-5-phosphate isomerase A; TAIR: AT2G01290.1 ribose-5-phosphate isomerase 2; Swiss-Prot: sp|Q9ZU38|RPI2_ARATH Probable ribose-5-phosphate isomerase 2; TrEMBL-Plants: tr|A0A1J7FSX7|A0A1J7FSX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0331100 LjG1.1_chr5 64816942 64821564 +
2 domain predictions
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LotjaGi5g1v0331100.2
n.a. Ribose-5-phosphate isomerase A; TAIR: AT2G01290.1 ribose-5-phosphate isomerase 2; Swiss-Prot: sp|Q9ZU38|RPI2_ARATH Probable ribose-5-phosphate isomerase 2; TrEMBL-Plants: tr|A0A1J7FSX7|A0A1J7FSX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0331100 LjG1.1_chr5 64816945 64820291 +
2 domain predictions
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LotjaGi6g1v0223700.1
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase; TrEMBL-Plants: tr|G7IGG7|G7IGG7_MEDTR Methylthioribose-1-phosphate isomerase; Found in the gene: LotjaGi6g1v0223700 LjG1.1_chr6 52870158 52877395 +
2 domain predictions
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LotjaGi6g1v0223700.3
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase; TrEMBL-Plants: tr|A0A151RME1|A0A151RME1_CAJCA Methylthioribose-1-phosphate isomerase; Found in the gene: LotjaGi6g1v0223700 LjG1.1_chr6 52873832 52877402 +
2 domain predictions
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LotjaGi6g1v0223700.4
n.a. Methylthioribose-1-phosphate isomerase; TAIR: AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase; TrEMBL-Plants: tr|G7IGG7|G7IGG7_MEDTR Methylthioribose-1-phosphate isomerase; Found in the gene: LotjaGi6g1v0223700 LjG1.1_chr6 52874761 52877037 +
2 domain predictions
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LotjaGi6g1v0263800_LC.1
n.a. Ribose-5-phosphate isomerase A; TAIR: AT5G44520.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic; TrEMBL-Plants: tr|A0A151T698|A0A151T698_CAJCA Ribose-5-phosphate isomerase A; Found in the gene: LotjaGi6g1v0263800_LC LjG1.1_chr6 57755109 57759879 +
2 domain predictions
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LotjaGi6g1v0263800_LC.2
n.a. Ribose-5-phosphate isomerase A; TAIR: AT5G44520.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic; TrEMBL-Plants: tr|A0A151T698|A0A151T698_CAJCA Ribose-5-phosphate isomerase A; Found in the gene: LotjaGi6g1v0263800_LC LjG1.1_chr6 57756083 57759343 +
2 domain predictions
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LotjaGi6g1v0263800_LC.3
n.a. Ribose-5-phosphate isomerase A; TAIR: AT5G44520.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic; TrEMBL-Plants: tr|A0A151T698|A0A151T698_CAJCA Ribose-5-phosphate isomerase A; Found in the gene: LotjaGi6g1v0263800_LC LjG1.1_chr6 57756084 57759175 +
2 domain predictions
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LotjaGi6g1v0263800_LC.4
n.a. Ribose-5-phosphate isomerase A; TAIR: AT5G44520.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic; TrEMBL-Plants: tr|A0A151T698|A0A151T698_CAJCA Ribose-5-phosphate isomerase A; Found in the gene: LotjaGi6g1v0263800_LC LjG1.1_chr6 57756084 57759175 +
2 domain predictions
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LotjaGi6g1v0264100.1
n.a. Ribose-5-phosphate isomerase A; TAIR: AT5G44520.2 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HLQ2|A0A1J7HLQ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0264100 LjG1.1_chr6 57771779 57775859 +
2 domain predictions
 –