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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0205400 |
| Transcript ID | LotjaGi1g1v0205400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44643212..44644355) extracted from Lotus japonicus Gifu genome v1.2.
CTACATGGTTTTGGGTATGACACCTCAACTGATGATTACTTGGTTGTATGCATGGTATTGATTCCTTATGACTGTTTTGA AGAAGATCCAGAGGATGTAGCTGATTATCCTACTCGCATTTCATATTTTTCCTTGAACACAAATTCCTCGTTTTACCCGG AGGGTACTTATGTTCAATATTGGGATAATGGTGAACGTGAATTCAAAGTTGGGTGTTTGTTGAATGAGGCCCTGCATTGG TTGGTTACCTCTCATGAGACTAAACTTCAAGTAGTTATTGCCTTTGATTTGGTACAAAGGACTTTGTCTGAGATTCCCTT GTCACCAACTTTATCCAGGAAGTTAGAACATAAAAAGTATCGGTATCATTTGAAGGTCATGGGAGAATGTCTCAGCCTAT GTTACCCGGGTGGCGGCGATTCAATGGTTGAGATTTGGGTGATGAAAGAATATAAAGTTTCGTCATCTTGGACTAAGTTA TTTGTTTTTTCTACTTGTAACATTCCCAACAACTTGTTTTCTCCAATATGTCTCACCAAAGATGGTAGAATTTTTGGAAG TGGCTATGGAAGATTAATGATACTTAATTTTAATGGATGGTTCCTTGATATGTGTATACTCCGGCCCGAACCTGATATAC AGAAATATATTGATGTACATCACTGTATGTATAGAGAGAGTTTACTATCACTTCCTATGACTTTGAGGAAGCAAGTGAAG GCTTCGAGGAAGCAAGGGAAGACTTCGAGGAAGTAAGGGAAGATGGTCAGTTGACGAGTGCCCTGGATGAAGCAAGTGAA GATGACCAATAGGTAACTGTCCATAAGAATTAGCGTATGTAATTCCTCAATCCTTTTCACAATTATATTGCTATTTATCA TGCATAACAGAAAAATGAGAAGTTGTCTTGTACTTTCTCCTTCTTAAGTGATTTTATTTGTTTCTCCATAAGTGCGAAAC ATGAAATTGCAAGGAAAGATGAGGTTTGGTGCGGGGCTGAATTTACTTATTGATAGGAAAAACAACTAAGGTCTGGGGTG AAATAACAACACTCGAACTAAGATCCTGTAGAATTTATAATATGGTGACATTTTAATTAAGCTCATCTTTTCGAGCAGGC CATGAAGGGTGCAAGAGTTCTGAC
CDS sequence (LotjaGi1g1v0205400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATTGATTCCTTATGACTGTTTTGAAGAAGATCCAGAGGATGTAGCTGATTATCCTACTCGCATTTCATATTTTTC CTTGAACACAAATTCCTCGTTTTACCCGGAGGGTACTTATGTTCAATATTGGGATAATGGTGAACGTGAATTCAAAGTTG GGTGTTTGTTGAATGAGGCCCTGCATTGGTTGGTTACCTCTCATGAGACTAAACTTCAAGTAGTTATTGCCTTTGATTTG GTACAAAGGACTTTGTCTGAGATTCCCTTGTCACCAACTTTATCCAGGAAGTTAGAACATAAAAAGTATCGGTATCATTT GAAGGTCATGGGAGAATGTCTCAGCCTATGTTACCCGGGTGGCGGCGATTCAATGGTTGAGATTTGGGTGATGAAAGAAT ATAAAGTTTCGTCATCTTGGACTAAGTTATTTGTTTTTTCTACTTGTAACATTCCCAACAACTTGTTTTCTCCAATATGT CTCACCAAAGATGGTAGAATTTTTGGAAGTGGCTATGGAAGATTAATGATACTTAATTTTAATGGATGGTTCCTTGATAT GTGTATACTCCGGCCCGAACCTGATATACAGAAATATATTGATGTACATCACTGTATGTATAGAGAGAGTTTACTATCAC TTCCTATGACTTTGAGGAAGCAAGTGAAGGCTTCGAGGAAGCAAGGGAAGACTTCGAGGAAGTAA
Protein sequence (LotjaGi1g1v0205400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLIPYDCFEEDPEDVADYPTRISYFSLNTNSSFYPEGTYVQYWDNGEREFKVGCLLNEALHWLVTSHETKLQVVIAFDL VQRTLSEIPLSPTLSRKLEHKKYRYHLKVMGECLSLCYPGGGDSMVEIWVMKEYKVSSSWTKLFVFSTCNIPNNLFSPIC LTKDGRIFGSGYGRLMILNFNGWFLDMCILRPEPDIQKYIDVHHCMYRESLLSLPMTLRKQVKASRKQGKTSRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 192 | 175 | 4.1E-31 | – | |
| PANTHER | 18 | 192 | 175 | 4.1E-31 | – | |
| Pfam | 56 | 153 | 98 | 1.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0205400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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