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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0207000 |
| Transcript ID | LotjaGi1g1v0207000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405; TrEMBL-Plants: tr|A0A061ET89|A0A061ET89_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0207000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45095313..45099288) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAAATCTGTCACGATCCTTGGCTCCACGATGAGCTTTGTCCCTTTTCCTCCATTGAGGAGCTTGTGCTTCTCCTCCT CAGAATCTTCCATGGAACCCTAGCTGAGCTCTTCAATCCTTTGTTTTGGTGGAAGCTCAGCTCATCTCTCCCATCTTCAA CGACTGTTTGAATTTTTGGCTAGGTTTCTGTTTGTTATGATCTTCGATTTTGATTTTGAGTTTTGCTTTGGAGTCATGTT TCCGAGCGTTTGATTCCTCCTTCCTATTCCTTGATTTTGCAATGATTGGTTCTATTGATGTATGGAATCGCAGATAAAGG TCAGGAGTTGGAAACTCGACAAGCTGGTTGTTTTGTTCATGGTGTCTTCAGTTATCGCCGCCGCATGCAGTCGCTTATTG GTTGAAACAATCTTCTCCTTCGCAATCGAGACACAAGGAATCTTATGTGTATCAATGAGGCAGCATTGTCACGACCAAGA CACACAATCAAGGAATCTTAATTTTGTTGTTGGTGTGGGGTGTTGCATATGTGTGTTATCTTAAATAGTCAATATACTCA ACAAATTCTTCAATAACTGAATGAGGTCCTTCTACTGTCTTCAAGTTTCTTTAATAACAGCGCATCTGGTCTCGAAAGAT TACAGGCCCTGTGTATTCTTGAGTGCCATAGGGAGAGTAACTTGTTTCGTACTCCACAAGTGGGTCATTGATGCTCTTGT TGCATTAGCTATCATCATGCATACAACTTGTTCATTGTTCTAATTTCTCTTATTTTCCTTTTTCCTGATGTGGTTCCTTT GGGACAGGTTTGACAAATCTGGAGTATTTAAATCTGGATTCATGCAAGATAGGTGATGATGGGCTTGCTAATTTTACAGG TTTGACAAACTAGATTTCACATTTTCCCTTTTTGTAGATTTGCATGGGCTACATTGTTTGGAGGTACATGGAATGAGCCT ATATATACCTTGATGCCATTTTCAGCTGAGTGGTGTTAATTTGGTGATTACTTGCTTTTCAATGACAGAGGAATGGATAT CATAGGTCAAAACAAGGAGAGGATTCTTCTTACCATTTTTGGTAAGAACTGTACCTTGCATTTTGATTTTGATGCTAAGC CTGTAATTTCATTAAAGTATTTCGAACCAATTTTCTTTTGATAATATTTGGTACTTGGAATCTTATTTTGTTTCCCACAT GGCAGTACTTTTGTCTAGTTTTTCCTCCCTCTTTTGGATTGCCAACGTTTATATGTGGTCTAAAATAAATCTTGTAAGCT ATATGCAAGACCATGCGAAAACTAAGATGAAGAGTTCTGGAATGCCTTGGCCGGGTGATGAAGGCGAACAATGCTGGGAA CAAGCATGGAAAGCTATAAAAAGGTGAGACTTCTTTATATGTGAAGTTTATAGCATGAAGTAGGTTTTATGCCTTTTTCA TTGGAGTTTATATCATGTTCCCAAAAGAATTTTTATTTTGTATATTTGGGCCAAACTCCACTGTCCTTACATTTTGGTGC CTATTTCGCAATATTACATTTTGTTTTGGTTGACAAGTTTGTATATTTGGGTCAAACTCCACTGTCCTTTTCCCACTTGT AAACTTTTAAGATTCAAGAGAACTCTTTAAGGGCTCAGTTTAGTTTAGCGGTAGAAACAGGGCGAACCTCAAAAAGGGAA CATTAGTGATTTAGTGGTAGACACATATGCTTGTCCTCCCATTTTTCGTTTATTTTGTTTCACATCGGTTTTTATGTATA TTTAGTCCAAAGTTTATGACTTTGGTTTCGTATTTTGGATTTCCTGTATTATAATTTTAGGCTTTGATCCTTCGTGGTTC GAGAGCCTTACTATGAACTTCTATTTTTCTGCTGCCATCATTGCTCTTTCGCTTGCTGCTGCCCGCCCTTGGCTTTGTTC TGCTGCTGTTCCTGTTATGTTTTCTGTCTTGCTTCTTGTTTTGTTTTTCTTTCTGTTGTCTTTTATTCTTTTTGTTGTTT CCTAAGTTAGTTCACTTGGGGGAACTTTGTCCTCAACAGTTTTCGCATATACATATATGATTTCACTTTTCAAAAAAAAA AAAATTCTACGGATCTATTTTTTTCCTTCAAGTTAGAAATTTAAATGATCACTTGATCTGTACCAGCAAGTGGAGGTACA ACTTCTGGGACCGGAAGCTTGGATAATCCCAAAGAAAATGCAACGGATCGTTCCTCCTAAAGTAGCTTTGTTTCTATGGC AAACTTCTGCAAACAAAATTGCGGTTAAACATAATCTAATGGCTCGAGGGGTTGTAATTGAGAACGAAGGTTTATGTAGC AGCTGTGGGATTGTAATCGAGACAACGGGTCACCTTATGCTGTCATGTACATATTCATGGAAGCTGTGGTATGCTGTCAT GTCAAGGGAAGGTGTGCTATGGTGCTGTCCAGAACAAGTTAAAGATCTGCTAATGGAATGGCCTTTTTTGCAATCCAATT CTGATTCAATTCTCTGGGATCTAATTCCGTATTCGCTGTGCTGGTCCCTGTGGATTGTGCGGAATAATGTTATTTTTCAG AATGCTCAATCCTCAATGGAATCCACATGGGATTTGCATATTGTGAGAATCATGGGATGGATGAAGGCATGGTAGAAAGA ATGCCCGTACTCAGCTGTGGATTTCTCTTGCAACTTCGCTGACTTGAGGGTGAATAAATCTCTGATTAGAGTAAGGCCAA AAATCTGGTTTCCACCACCGACGGGCTTGATCAAGTTTAACGTTGATGGCTCATCCCAAGGGAATCCGGGCAAGAGTGGA ATCGGTGGGATTCTGAGAGACTTGAGCAGGATACATAGAGGTTACTTTTCCTTGGCTGTAGGGGAATTATGGGCCTTTGA GGCGGAGGTCAAAGGAATTCTAGCAGCTCTAAAGTTTTGTAAAGAATTTCAGCTCAAACATCTGTTAATTGAAAGCGATT CTGCACTGGCAGTTGGGTGGGTTTCTAATAAAGAACATCGTCCATGAAAATTATTAAATGACTTAGTGCTGATTTATATG TTGATGGAAGATGTGGATTGTGTGGGAGTATTTCACTTTTATAGGGAATCTAATCAGCTCGCGGACTACCTAGCAAAAAC TGGATGCAATAGAACAATGCCAATCTGGTCTTTTCTTTGAATGATATTTTATATCTGCTGTGTCAAAATGAGGTACGTGC ACCCACTGCATAATAGCTTTTGTATCTTCTCTTAATGCTTGAATGGTCTATGGTTTTCTCCTAATGCAATTTACTCAATG AGCTTCAAACTTCGGTTTATCTTGAATTTGAAGTTGCTTTTCTTGCTGGTAAGTATCCATCAATTAGAAAATTAATTCTC TCAGGTAGGTCTTCTTTACTTTAAAATCTGTATATATAGACTGATATATGTTTTTTTTTTTTCATTAAGTTTCCATTTCT TTGTTACCTTCACCGTTTATATTTCACCCTCTCTTAACTTTTATTTTATAAAAGTGATTGTGATCTGTTTCATTTTTCTA TTTGCTATAGCTACCTGGATATGCTACCTGGATATGATCTTTAAGTTTTGTCTCTTCATCCCTCTATCTAAAGGCATAAT TTTTAGGTTCATCTTAATTGGTCCCCAGTTGTAAACTTGCTTCAATAGCAACACTTTGATTGGTAAATCTTGCCACTTGG ATCTATTGTCTAAGCTTACTGTTAACGTACTTTTAATTCTTTTTGACATTTCTCTTGTTAAGTTAATTAATTGAAAAATC AGGCAAGGATTTAGATTCTTTGTTTCTCTTGTTAAATTTAAAACCTCATTCATGTCTAGATAGTTTTCCTTTATAAAAAT TAGTCCTTTAAAAAAAAATTTGTCTTTACAGGTATTGTGGTCTTATCATTTTTATCATTTTAAGCACTAGTGTTTTTTAC CCGCGCGTTGCACGAGAAATTTGTTTATTGTATTTGATACATCGATTAATATTTTA
CDS sequence (LotjaGi1g1v0207000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGGAACAAGCATGGAAAGCTATAAAAAGCAAGTGGAGGTACAACTTCTGGGACCGGAAGCTTGGATAATCCCAAA GAAAATGCAACGGATCGTTCCTCCTAAAGTAGCTTTGTTTCTATGGCAAACTTCTGCAAACAAAATTGCGGTTAAACATA ATCTAATGGCTCGAGGGGTTGTAATTGAGAACGAAGGTTTATGTAGCAGCTGTGGGATTGTAATCGAGACAACGGGTCAC CTTATGCTGTCATGTACATATTCATGGAAGCTGTGGTATGCTGTCATGTCAAGGGAAGGTGTGCTATGGTGCTGTCCAGA ACAAGTTAAAGATCTGCTAATGGAATGGCCTTTTTTGCAATCCAATTCTGATTCAATTCTCTGGGATCTAATTCCGTATT CGCTGTGCTGGTCCCTGTGGATTGTGCGGAATAATGTTATTTTTCAGAATGCTCAATCCTCAATGGAATCCACATGGGAT TTGCATATTGTGAGAATCATGGGATGGATGAAGGCATGGTAG
Protein sequence (LotjaGi1g1v0207000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGTSMESYKKQVEVQLLGPEAWIIPKKMQRIVPPKVALFLWQTSANKIAVKHNLMARGVVIENEGLCSSCGIVIETTGH LMLSCTYSWKLWYAVMSREGVLWCCPEQVKDLLMEWPFLQSNSDSILWDLIPYSLCWSLWIVRNNVIFQNAQSSMESTWD LHIVRIMGWMKAW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 31 | 92 | 62 | 1.4E-11 | ||
| PANTHER | 32 | 158 | 127 | 7.6E-25 | – | |
| PANTHER | 32 | 158 | 127 | 7.6E-25 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0207000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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