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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0207000 |
Transcript ID | LotjaGi1g1v0207000.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2; TrEMBL-Plants: tr|A0A061ET89|A0A061ET89_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0207000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45095313..45099288) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAAATCTGTCACGATCCTTGGCTCCACGATGAGCTTTGTCCCTTTTCCTCCATTGAGGAGCTTGTGCTTCTCCTCCT CAGAATCTTCCATGGAACCCTAGCTGAGCTCTTCAATCCTTTGTTTTGGTGGAAGCTCAGCTCATCTCTCCCATCTTCAA CGACTGTTTGAATTTTTGGCTAGGTTTCTGTTTGTTATGATCTTCGATTTTGATTTTGAGTTTTGCTTTGGAGTCATGTT TCCGAGCGTTTGATTCCTCCTTCCTATTCCTTGATTTTGCAATGATTGGTTCTATTGATGTATGGAATCGCAGATAAAGG TCAGGAGTTGGAAACTCGACAAGCTGGTTGTTTTGTTCATGGTGTCTTCAGTTATCGCCGCCGCATGCAGTCGCTTATTG GTTGAAACAATCTTCTCCTTCGCAATCGAGACACAAGGAATCTTATGTGTATCAATGAGGCAGCATTGTCACGACCAAGA CACACAATCAAGGAATCTTAATTTTGTTGTTGGTGTGGGGTGTTGCATATGTGTGTTATCTTAAATAGTCAATATACTCA ACAAATTCTTCAATAACTGAATGAGGTCCTTCTACTGTCTTCAAGTTTCTTTAATAACAGCGCATCTGGTCTCGAAAGAT TACAGGCCCTGTGTATTCTTGAGTGCCATAGGGAGAGTAACTTGTTTCGTACTCCACAAGTGGGTCATTGATGCTCTTGT TGCATTAGCTATCATCATGCATACAACTTGTTCATTGTTCTAATTTCTCTTATTTTCCTTTTTCCTGATGTGGTTCCTTT GGGACAGGTTTGACAAATCTGGAGTATTTAAATCTGGATTCATGCAAGATAGGTGATGATGGGCTTGCTAATTTTACAGG TTTGACAAACTAGATTTCACATTTTCCCTTTTTGTAGATTTGCATGGGCTACATTGTTTGGAGGTACATGGAATGAGCCT ATATATACCTTGATGCCATTTTCAGCTGAGTGGTGTTAATTTGGTGATTACTTGCTTTTCAATGACAGAGGAATGGATAT CATAGGTCAAAACAAGGAGAGGATTCTTCTTACCATTTTTGGTAAGAACTGTACCTTGCATTTTGATTTTGATGCTAAGC CTGTAATTTCATTAAAGTATTTCGAACCAATTTTCTTTTGATAATATTTGGTACTTGGAATCTTATTTTGTTTCCCACAT GGCAGTACTTTTGTCTAGTTTTTCCTCCCTCTTTTGGATTGCCAACGTTTATATGTGGTCTAAAATAAATCTTGTAAGCT ATATGCAAGACCATGCGAAAACTAAGATGAAGAGTTCTGGAATGCCTTGGCCGGGTGATGAAGGCGAACAATGCTGGGAA CAAGCATGGAAAGCTATAAAAAGGTGAGACTTCTTTATATGTGAAGTTTATAGCATGAAGTAGGTTTTATGCCTTTTTCA TTGGAGTTTATATCATGTTCCCAAAAGAATTTTTATTTTGTATATTTGGGCCAAACTCCACTGTCCTTACATTTTGGTGC CTATTTCGCAATATTACATTTTGTTTTGGTTGACAAGTTTGTATATTTGGGTCAAACTCCACTGTCCTTTTCCCACTTGT AAACTTTTAAGATTCAAGAGAACTCTTTAAGGGCTCAGTTTAGTTTAGCGGTAGAAACAGGGCGAACCTCAAAAAGGGAA CATTAGTGATTTAGTGGTAGACACATATGCTTGTCCTCCCATTTTTCGTTTATTTTGTTTCACATCGGTTTTTATGTATA TTTAGTCCAAAGTTTATGACTTTGGTTTCGTATTTTGGATTTCCTGTATTATAATTTTAGGCTTTGATCCTTCGTGGTTC GAGAGCCTTACTATGAACTTCTATTTTTCTGCTGCCATCATTGCTCTTTCGCTTGCTGCTGCCCGCCCTTGGCTTTGTTC TGCTGCTGTTCCTGTTATGTTTTCTGTCTTGCTTCTTGTTTTGTTTTTCTTTCTGTTGTCTTTTATTCTTTTTGTTGTTT CCTAAGTTAGTTCACTTGGGGGAACTTTGTCCTCAACAGTTTTCGCATATACATATATGATTTCACTTTTCAAAAAAAAA AAAATTCTACGGATCTATTTTTTTCCTTCAAGTTAGAAATTTAAATGATCACTTGATCTGTACCAGCAAGTGGAGGTACA ACTTCTGGGACCGGAAGCTTGGATAATCCCAAAGAAAATGCAACGGATCGTTCCTCCTAAAGTAGCTTTGTTTCTATGGC AAACTTCTGCAAACAAAATTGCGGTTAAACATAATCTAATGGCTCGAGGGGTTGTAATTGAGAACGAAGGTTTATGTAGC AGCTGTGGGATTGTAATCGAGACAACGGGTCACCTTATGCTGTCATGTACATATTCATGGAAGCTGTGGTATGCTGTCAT GTCAAGGGAAGGTGTGCTATGGTGCTGTCCAGAACAAGTTAAAGATCTGCTAATGGAATGGCCTTTTTTGCAATCCAATT CTGATTCAATTCTCTGGGATCTAATTCCGTATTCGCTGTGCTGGTCCCTGTGGATTGTGCGGAATAATGTTATTTTTCAG AATGCTCAATCCTCAATGGAATCCACATGGGATTTGCATATTGTGAGAATCATGGGATGGATGAAGGCATGGTAGAAAGA ATGCCCGTACTCAGCTGTGGATTTCTCTTGCAACTTCGCTGACTTGAGGGTGAATAAATCTCTGATTAGAGTAAGGCCAA AAATCTGGTTTCCACCACCGACGGGCTTGATCAAGTTTAACGTTGATGGCTCATCCCAAGGGAATCCGGGCAAGAGTGGA ATCGGTGGGATTCTGAGAGACTTGAGCAGGATACATAGAGGTTACTTTTCCTTGGCTGTAGGGGAATTATGGGCCTTTGA GGCGGAGGTCAAAGGAATTCTAGCAGCTCTAAAGTTTTGTAAAGAATTTCAGCTCAAACATCTGTTAATTGAAAGCGATT CTGCACTGGCAGTTGGGTGGGTTTCTAATAAAGAACATCGTCCATGAAAATTATTAAATGACTTAGTGCTGATTTATATG TTGATGGAAGATGTGGATTGTGTGGGAGTATTTCACTTTTATAGGGAATCTAATCAGCTCGCGGACTACCTAGCAAAAAC TGGATGCAATAGAACAATGCCAATCTGGTCTTTTCTTTGAATGATATTTTATATCTGCTGTGTCAAAATGAGGTACGTGC ACCCACTGCATAATAGCTTTTGTATCTTCTCTTAATGCTTGAATGGTCTATGGTTTTCTCCTAATGCAATTTACTCAATG AGCTTCAAACTTCGGTTTATCTTGAATTTGAAGTTGCTTTTCTTGCTGGTAAGTATCCATCAATTAGAAAATTAATTCTC TCAGGTAGGTCTTCTTTACTTTAAAATCTGTATATATAGACTGATATATGTTTTTTTTTTTTCATTAAGTTTCCATTTCT TTGTTACCTTCACCGTTTATATTTCACCCTCTCTTAACTTTTATTTTATAAAAGTGATTGTGATCTGTTTCATTTTTCTA TTTGCTATAGCTACCTGGATATGCTACCTGGATATGATCTTTAAGTTTTGTCTCTTCATCCCTCTATCTAAAGGCATAAT TTTTAGGTTCATCTTAATTGGTCCCCAGTTGTAAACTTGCTTCAATAGCAACACTTTGATTGGTAAATCTTGCCACTTGG ATCTATTGTCTAAGCTTACTGTTAACGTACTTTTAATTCTTTTTGACATTTCTCTTGTTAAGTTAATTAATTGAAAAATC AGGCAAGGATTTAGATTCTTTGTTTCTCTTGTTAAATTTAAAACCTCATTCATGTCTAGATAGTTTTCCTTTATAAAAAT TAGTCCTTTAAAAAAAAATTTGTCTTTACAGGTATTGTGGTCTTATCATTTTTATCATTTTAAGCACTAGTGTTTTTTAC CCGCGCGTTGCACGAGAAATTTGTTTATTGTATTTGATACATCGATTAATATTTTA
CDS sequence (LotjaGi1g1v0207000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACGGATCGTTCCTCCTAAAGTAGCTTTGTTTCTATGGCAAACTTCTGCAAACAAAATTGCGGTTAAACATAATCT AATGGCTCGAGGGGTTGTAATTGAGAACGAAGGTTTATGTAGCAGCTGTGGGATTGTAATCGAGACAACGGGTCACCTTA TGCTGTCATGTACATATTCATGGAAGCTGTGGTATGCTGTCATGTCAAGGGAAGGTGTGCTATGGTGCTGTCCAGAACAA GTTAAAGATCTGCTAATGGAATGGCCTTTTTTGCAATCCAATTCTGATTCAATTCTCTGGGATCTAATTCCGTATTCGCT GTGCTGGTCCCTGTGGATTGTGCGGAATAATGTTATTTTTCAGAATGCTCAATCCTCAATGGAATCCACATGGGATTTGC ATATTGTGAGAATCATGGGATGGATGAAGGCATGGTAG
Protein sequence (LotjaGi1g1v0207000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRIVPPKVALFLWQTSANKIAVKHNLMARGVVIENEGLCSSCGIVIETTGHLMLSCTYSWKLWYAVMSREGVLWCCPEQ VKDLLMEWPFLQSNSDSILWDLIPYSLCWSLWIVRNNVIFQNAQSSMESTWDLHIVRIMGWMKAW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 130 | 127 | 2.8E-25 | – | |
PANTHER | 4 | 130 | 127 | 2.8E-25 | – | |
Pfam | 4 | 64 | 61 | 1.8E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0207000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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