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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0209900 |
| Transcript ID | LotjaGi1g1v0209900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding protein 39; TAIR: AT5G18940.1 Mo25 family protein; Swiss-Prot: sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39; TrEMBL-Plants: tr|I3S517|I3S517_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0209900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45931173..45936420) extracted from Lotus japonicus Gifu genome v1.2.
GCTTCACAAATATTTTGATTCATGAGAAGCTGAGGAAAACGCATGGGTCCAAGTCCAACACTGAAGCAAGCGAGTTGGAT CGGCCCGTGTGCGTGTAGCCATGTCAAGTTCCCGCCAAGGCGAACGAACGAAAGCATTGTTCCGGAAACACCCCCGCCGT CACCGCCGAGAACTACCCAGTTCCGCTGTCTCCTCCGCTTCCAGCAATCTCGAAGATTCACGATCATCATGTGTTTTTCA TTCTTCAAGGGTTCGAGGCCGAAAACGCCGCCTGAGGTGGCCAAGTCCATCAAGGAAAGCCTCATGGCCCTCGATACCAA AACCGTTGCTGAAGTTAAATCCCTCAAGAAGGTAGCACCCCTTTTGATTCAAATCCTCAATGCTCTATCTGGGTATTTGT ACTTTTTTCAGTTAAATTTTCGGTCTTGAATCGTGGGTGTCTTATAATTCTCTAAACCGGGTTTCTTGTTAAACAAACAA GAAGATCATGCATATTAAAAGTACAAACCGGGTTTCTTGTTAAACAACTATTTTGTATGCCATGTTAATCACCTAAGAAG ATTATGTCGGAGAAGTCATTCCGGCACTGTTTCTTTGGAGTTATGATATATACACATTTCTCCACTCATTTTGCACCTTC ATTTTTTATTTATTTATCTTTTCTCTATCAATCAAATTACCTATCACTTCTTTACCTTTCTCTCTCCTTTCTTCCGAACT TTCTCCCTCCACCTCTCCACACCTAAAAAATGAGGTGTGCAGATATAATTATTCGTTTATTTGCATGCTTCTAATTGTCA CCATTTTGTTGAAGATATTTATTGTGGACAAGAAGCAAAATAATATCTACACAGATATTAAGCCTTTCTTTCACTTTATT GTAGGCTTTTGAGAAAGTTGAAAAGAATTTCGTAACAATGAGAACAATACTTTCTGGAGATGGAGAGTCAGAACCAAATC TGGACCAGGTTTCACAGCTAGTGGAGGAAATCTGCAAGGAGGATGTTCTCACTCTTGTAATTCACAAGCTTCCTGCACTT CAATGGAAAGTAAGTTCTGATTGATACCAAGCATTACCATGTGGAGTTGACTTATTGGATACTCATTGTTTGAGTGTGGA TTTTGATACAGGCTAGAAAGGATTTAGTCCACTGTTGGTCCATATTATTGAAACAAACTGTTGACTTCAAATACTGCTGT GTAGAATACATTGAACAACACACTGAGTTACTGGACTTTCTTGTTGCATGGTAAGTTTTTCACTGCATCACCTTTTCTCT CACCAACTTGAACTGATTTCTGCTGCCTTCCTTCACTCCTTTTCCAATGAGGGATCTTTATCTTTCTTGATGGTATTCAA GTTGGGTGAATGAAACTAATGCTCCATGCCAGATTGAAAACATGAGAGATTTTGGTTTTTCTTAATTTCAACATCTTTTG TATCCTTGTAACTTGTCTGGTCTGGGAAAAAGTTGGTGAAGGACATTTGGATTTATTTTAGTTTTATGACAGTGATGAAC ATACACCGCAATGCTGTGAATGCCATAAATGAGTGACCTTTCCTCTATATTTGGAGTATAAGATTCAACATGCAGTATAT TGCTATTAATACTAGTCTTACAGTATATTGCTATCAATAATTGCCAAGGTGATTTTTCCAAAATCAGATATCTAATATTA CAGCAATGTGAAACATGTTTAGTTTCACTATATACTTAAGTAAACAACTATATATAGTTATAAATAGTTTCTCACAACAT TTCTGTATCCATTTCCAAGCAGCTATGATAACAGCGATATTGCCTTGAGCTGTGGCTTAATGTTGCGGGATTGCATCAAA TTTCCGACACTTGCAAAGTAAGTTATTTTGGGTTGTCACTATTTTTTCTTTTTCCTAATTTTTCTGATATTTTCATGTTC ATTGTAGACTCATATCGGTCCTGCCAAGATTTTGATGTGCATTTTTGTAAAAGGATCTGCTTCTGTACTCATGCTTTAGT GGGACTTATTATATTGTAAAAACTAACAGATTATTATCACTATAAACTTGCATGTTGTGGCTGGTGCTTGTCATGCAATC TATCAAGATGGCAAGTCGGTTATGCTTCTCTAACTTTTTCTTTTTTTACTTTTGGGCATTATCAGATACATATTGGAATC TGCAAGCTTTGAGCTCTTCTTTAAATTTGTAGAGTTGCGTAACTTTGATGTTGCATCTGACGCATTTTCTACGTTTAAGG TTAGATCTGAATTTTCCCCCTTTAATTCCCATCACTTATCTTACTGGTTGTAGAGTTCTATATGCCCCTTAATATATGCC TTGCAGGACCTTCTTACTAAACATGGAGATGTGGTCTCTGAATTTTTGACAGCTCACTATGACGAGGTTTGCTTCCTTTT TGGCATGTTTAACAGATTTGAGCATATCAAGCCAGCACAAAATACTGCTTGAGCAAAATTTATGAATGTCGGTTGAATAT TTACCCAGGAGATCAAATCTCTTGGGAAATAATTTAAGCATATATGTTATCCTTCCTAATTGGATAGTTAAGTGTGCCTA CCCTCATCTTTAAACATGCGCGCGGGCATGCTAGAAACTAATTGATTGGGGTGGTTTTATCTCCTATATATAGTCCATCT TTTTCTAATATGACTTCTTGTTCCCAGTTCTTTGATCAATACGAGAAACTTTTGACATCTTCTAATTATGTCACAAGGAG CCAGTCTTTGAAGGTTTGTACTAGCAACAATTTCAATGTTTTTGCTTTCTGAACTTCTTTTTGATATCCATGCTAATGAA CAATTGAATTTATATGGATTCTAGCTTCTCTCGGAATTTCTTCTGGAATCTCCCAACTCTAAGATAATGAAGCACTACAT CTTAGAAGTTTATCATCTGAAATTCATCATGACATTATTGAGGGTATGACTCCTCTTAATCTTGTTAGTTGTGTATTATG TTTTCCCCCTTGACTAGTGGACTTGCTTTTCCTGTTATTACACGCAGTATGCATAACGGAACATGTTCATGTTTCCTTTT AGTGTTGTATATCTTGGTTTCTCTGTTTGTTTAAATTTTCATATAAAGGACTACTTTCTCTTGTCTCTGTTTTAATTTTG TGTATTGCATCACTACATGAACAGCAAAGGACACTTATTTTTAGAAGTTCTTGTTTATTATGGTGTTCTGTAACTTAATT GGTTTGTAAGGAAGCGAAGCAACTCTTTGAACACATTCTCTTTAGATATTTCATGGCTTTTAGATGATTTCATAATTAAT GATCTGGTCAGTTAAGTTACATGTAATGTTATTAGTGTGAAGTTTGTGATATATGTCACAGCCCCTCGAGGGCACAAACG TCGTTGCTTATGGATGCTCTTTGGTTGTGAATATTTGGCAATGAGGTGCCAATCAAAGCAAAACTTAAGTGTAATAGAGA TTAGAGATGAGAATGTACACAGGAGAAAGTTGAAGTAGCACCGATTTAGGAGAAGATGATAAAAACTTGCCAGGGGTGTG GGAAGATCACCAATAATGCAAATTGAATATAGTTCAGTTAAAAGGGGTAGACTCAGATCTAAGAAAATATGAGGAGAAAC AAATGAAACAGACCTTGCTGTAAATGGTTTTGCTGAAATGCTGGTTTTTATAGAACTCAATGACATCAATTGATCCACGT AGCTAACTTCACTATACTATTAGGATAAGGTTCGGTGATTATTGTTGCTGTACTCTATCTGCATGGCATCACAAACACTA ATTGCTAATATCAATGTTTAATGCAATGATAAGCATCTAAACTCTTGTTATACATGCTTTTTCTAGTTTTCACAGACAAG AGGTATTGCTTTTATTTTACCTTCTCTATCTATTAACTCCATATGTTTAATTGTTATATTTTGGGCTGAGCAGGATTCAA GTAAAAACATTCAGTTATCAGCTTTCCACATATTCAAGGTGAATTTCCCCTTTCATGCTTTTATATATTGAGCTCATTAA TTTTTGGATGCACAAAATATTCAACCCGATTATGCCTTCCATTCAAAAGTATTTGGGAGTATCTCATTCTTTGCAAAGTT TAGCATCCTTAAGAGACCTAATCTGCCTTGACTTATTACATGGCCACCATTAATTGAAAATTTTGTTATAGCAGGTTACA TTATGAATTCTTTTAATGGATAATCTAATTTACAAAAGAGTCTGAAATGCAGAAACTTTCTGAATGCTATTGTGCACTTC TTTCAAAATATTGACTGCTTGACATTCTATACTTTCTAATTCAAGGATTTCATTGGTTTTATTTTTTAAAATATACCCTA CAACATAACACTTCGTATTGGAGATGATAATCTATATCTGTTCAATATTCTCCCACACATTTATCCAGGTTTTCGTTGCT AATCCGAATAAGCCCCAAGAAATCAAAATTATTCTGGGGAAGAACAAGGAGAAGCTGCTAGAGTTGCTTCATAATCTGTC TCCGGGAAAAGGTTATTATACTTTCAGTAATGGGTTGATTTAAAACTTGCAATTACACATTAATGCTCTGAATTTCCATT CTCTGGTACTCAAGAATTGAAGTATAATATTTTGAGTCATTCGTCTGAGCTCTTGGCCACTTGCAGGTTCAGTAGATGAA CAATTTGAGGAGGAGAAGGAGCTTATCATCAAGGAAATCGAAAGAGTATCGATGTACATCCAAAGCTAATTTGATACTAG GTTTTCATGCATTGTTAGCAAAATCTATAGCAAAATCTTAAAATCCCACTATTTTACGCTTTAGCACCCTCATTCCGATC TGAATCTGATGCAAAATCTTTTTCCAGTGGAATCTGGTAGGATCTTAGATTCAGGTCGTACGATCCCACGATTTTACACT TCCGTATTCCTATTTTAATGTCGTAGTAACAAACTCTATCTGAGTTAATAGAGTTTGTTATTAGAGTTTGTTATATCTAT TCAATTTAGATTTAGTTTTGTTATCTGATAGAGCAGATTTAGTTTTGTTATCTGTTAGAGTTGATTAAGTTTTATTTTAT TTGATAGAGCTGATAGAACTCACGAGAGTTTTTAGAAACAACTTTGTGTATTTAAACAATGATTTTCGCAATTTGCACAC CATGGTGATAGCAATTTGACCAGAGTTTTCCATTGTTCCTTGCTCAAACCTCCATGATCCATATCATCACCAAGATTGCT CCCTGCACTATGCACAATGTTGGCACGGACATGTCCTTTAGAGGTGCG
CDS sequence (LotjaGi1g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCCAAGTCCAACACTGAAGCAAGCGAGTTGGATCGGCCCGTGTGCGTGTAGCCATGTCAAGTTCCCGCCAAGGCG AACGAACGAAAGCATTGTTCCGGAAACACCCCCGCCGTCACCGCCGAGAACTACCCAGTTCCGCTGTCTCCTCCGCTTCC AGCAATCTCGAAGATTCACGATCATCATGTGTTTTTCATTCTTCAAGGGTTCGAGGCCGAAAACGCCGCCTGAGGTGGCC AAGTCCATCAAGGAAAGCCTCATGGCCCTCGATACCAAAACCGTTGCTGAAGTTAAATCCCTCAAGAAGGCTTTTGAGAA AGTTGAAAAGAATTTCGTAACAATGAGAACAATACTTTCTGGAGATGGAGAGTCAGAACCAAATCTGGACCAGGTTTCAC AGCTAGTGGAGGAAATCTGCAAGGAGGATGTTCTCACTCTTGTAATTCACAAGCTTCCTGCACTTCAATGGAAAGCTAGA AAGGATTTAGTCCACTGTTGGTCCATATTATTGAAACAAACTGTTGACTTCAAATACTGCTGTGTAGAATACATTGAACA ACACACTGAGTTACTGGACTTTCTTGTTGCATGCTATGATAACAGCGATATTGCCTTGAGCTGTGGCTTAATGTTGCGGG ATTGCATCAAATTTCCGACACTTGCAAAATACATATTGGAATCTGCAAGCTTTGAGCTCTTCTTTAAATTTGTAGAGTTG CGTAACTTTGATGTTGCATCTGACGCATTTTCTACGTTTAAGGACCTTCTTACTAAACATGGAGATGTGGTCTCTGAATT TTTGACAGCTCACTATGACGAGTTCTTTGATCAATACGAGAAACTTTTGACATCTTCTAATTATGTCACAAGGAGCCAGT CTTTGAAGCTTCTCTCGGAATTTCTTCTGGAATCTCCCAACTCTAAGATAATGAAGCACTACATCTTAGAAGTTTATCAT CTGAAATTCATCATGACATTATTGAGGGATTCAAGTAAAAACATTCAGTTATCAGCTTTCCACATATTCAAGGTTTTCGT TGCTAATCCGAATAAGCCCCAAGAAATCAAAATTATTCTGGGGAAGAACAAGGAGAAGCTGCTAGAGTTGCTTCATAATC TGTCTCCGGGAAAAGGTTCAGTAGATGAACAATTTGAGGAGGAGAAGGAGCTTATCATCAAGGAAATCGAAAGAGTATCG ATGTACATCCAAAGCTAA
Protein sequence (LotjaGi1g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGPSPTLKQASWIGPCACSHVKFPPRRTNESIVPETPPPSPPRTTQFRCLLRFQQSRRFTIIMCFSFFKGSRPKTPPEVA KSIKESLMALDTKTVAEVKSLKKAFEKVEKNFVTMRTILSGDGESEPNLDQVSQLVEEICKEDVLTLVIHKLPALQWKAR KDLVHCWSILLKQTVDFKYCCVEYIEQHTELLDFLVACYDNSDIALSCGLMLRDCIKFPTLAKYILESASFELFFKFVEL RNFDVASDAFSTFKDLLTKHGDVVSEFLTAHYDEFFDQYEKLLTSSNYVTRSQSLKLLSEFLLESPNSKIMKHYILEVYH LKFIMTLLRDSSKNIQLSAFHIFKVFVANPNKPQEIKIILGKNKEKLLELLHNLSPGKGSVDEQFEEEKELIIKEIERVS MYIQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 63 | 399 | 337 | 2.1E-152 | – | |
| PANTHER | 63 | 399 | 337 | 2.1E-152 | ||
| Gene3D | 65 | 399 | 335 | 2.3E-127 | ||
| Pfam | 68 | 398 | 331 | 9.2E-114 | ||
| SUPERFAMILY | 74 | 398 | 325 | 1.44E-106 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0209900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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