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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0210500 |
| Transcript ID | LotjaGi1g1v0210500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor family protein; TAIR: AT5G60910.1 AGAMOUS-like 8; Swiss-Prot: sp|Q38876|AGL8_ARATH Agamous-like MADS-box protein AGL8; TrEMBL-Plants: tr|A0A0B2PMH0|A0A0B2PMH0_GLYSO Agamous-like MADS-box protein AGL8; Found in the gene: LotjaGi1g1v0210500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46059260..46059514) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGGGGAAGGGTGCAGTTGAAGAAGATCGAGAACATGGTCAACAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGG TTTGCTTAAGAAAGCTCATGAGATCTCAGTGCTTTGTGATGCTGAAGTGGCTCTCATAGTCTTCTCCAGCAAAGGAAAGC TCTATGAATACTCCAGCGATCCCTGGTACTTAATTATTCACTACTTCATCTTAATTTCTTTGTATATGATTTTCTCATCT ATATATGAGATCTGA
CDS sequence (LotjaGi1g1v0210500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGGGAAGGGTGCAGTTGAAGAAGATCGAGAACATGGTCAACAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGG TTTGCTTAAGAAAGCTCATGAGATCTCAGTGCTTTGTGATGCTGAAGTGGCTCTCATAGTCTTCTCCAGCAAAGGAAAGC TCTATGAATACTCCAGCGATCCCTGGTACTTAATTATTCACTACTTCATCTTAATTTCTTTGTATATGATTTTCTCATCT ATATATGAGATCTGA
Protein sequence (LotjaGi1g1v0210500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRVQLKKIENMVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLYEYSSDPWYLIIHYFILISLYMIFSS IYEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 32.198 | ||
| Phobius | 1 | 31 | 31 | - | – | |
| SMART | 1 | 60 | 60 | 3.4E-40 | ||
| PANTHER | 2 | 62 | 61 | 2.3E-40 | – | |
| CDD | 2 | 69 | 68 | 1.73351E-37 | ||
| SUPERFAMILY | 2 | 71 | 70 | 2.22E-30 | ||
| PANTHER | 2 | 62 | 61 | 2.3E-40 | – | |
| ProSitePatterns | 3 | 57 | 55 | - | ||
| PRINTS | 3 | 23 | 21 | 3.2E-32 | ||
| Pfam | 10 | 57 | 48 | 3.5E-26 | ||
| Gene3D | 13 | 71 | 59 | 4.7E-26 | ||
| PRINTS | 23 | 38 | 16 | 3.2E-32 | ||
| Phobius | 32 | 50 | 19 | - | – | |
| PRINTS | 38 | 59 | 22 | 3.2E-32 | ||
| Phobius | 51 | 61 | 11 | - | – | |
| Phobius | 62 | 82 | 21 | - | – | |
| TMHMM | 63 | 82 | 20 | - | – | |
| Phobius | 83 | 84 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0210500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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