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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0211100 |
| Transcript ID | LotjaGi1g1v0211100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein COBRA; TAIR: AT5G60920.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; Swiss-Prot: sp|Q94KT8|COBRA_ARATH Protein COBRA; TrEMBL-Plants: tr|A0A072V7V6|A0A072V7V6_MEDTR COBRA-like protein 2; Found in the gene: LotjaGi1g1v0211100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46355471..46358162) extracted from Lotus japonicus Gifu genome v1.2.
TCCTTCAATCTCCTTGCTGTCAATTTGGACCATCCCTTCTTTATGTCGGTTCAAATATTCTATTTTTGGCATCTTAGCTG ATAGGTAAGAGCTCTTGGGTATTTTCAAATCAGACATGGGGCAAGTGTGATGTTACTCATGGATACGAATTACACTCACT TATTTTTCTATATTTGTTTGAATCTCCACTTGAAAAACAATTGAGAAAGATATATGCAGATCTAAGTTGTTAAAACTTTT GCATTGGAGATTACTGAGAATTTCAAACTTACCAATTTTCCCTGCTTGTTCATGTACAGAAGCCTATGATGCACTTGATC CAACTGGCAATATAACAATTAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGTAAGTGACCAAAACTACTTC CTTAATGTGATAAAGTTCTAGGAAAAGCATATAGTGGGTATGACTTGCGCAATGGAAACTTCTATGGAATCAGTAAAGAC TTTGAATCTGTTTGTATGCGGACTGAAGAATGCTTATTGGAGCTTAGCAACTAGAAAAGCACTAGATAAGCTCCAATAAG TTTGCTAGTCCGCATTCAAACCGATTCTATGTAAGACTAGGACTTGCTTTTAGCTTGACTGATCTTCTTAGAGTTACATA CCTTGTTTGAGAAGGACTTGAAAGGCTGTCTGATTAGGAAATTTTAACATTTTATCAGCCATTTAACATATTGTACACCG CCATTATTGGACTAAACAATGAATAACTTCATATGTCAAGGAATCAACTGAATTATTTCCATTTGCTTTAAATTCAAATG TAAATGAAATATCGGCCGCTTCTATTTGTTTCTGTTGCTTAATTCTAATTGAGTGTTCTTGCTTGGTTGAGCAGGCTACT GTTACAATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGA AGTAATTTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTTCGAAGTTCAAAGCCGGCATACCACATTGTT GTAAAAAGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGGTTGCAAATTGTTGCAAAGGTGGA GTCTTAAATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCAGATTAGTGTTGGCTCTGCCGGAACAACTAA CAAAACGGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTGGCTATACTTGTGGCCCTGCAAAAAATGTGA GACCGACTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTGAGTAAGTTACTTTCAAACTAGTTCACTTAA GCTTTTTAACATGTTCATTTGTCTCTTGTAAACTTTCTTGATAGAACCAACATCTAGATTTCTAGATATCAGATAAGTAA ATAGTATTCTTCGTTATACAAAACTGAGATGACTCACAAGTTATAAAGTTGAACCTCCTTTTGATGTTTTATTATTCTTT TTAACTATGGCAGTTCATGTTTTCCCATTTTCTGAGCTTTCATAGAATAGCCTTTGTGGATGAGATGGATTTAAATTTCA TCAACAAAATAATTAGCAATATGGATAATTATTTAGGCTTTACACATTGGTGAGAGTTGAGCATGAAAATCAAATTTTAG CTTCTATTATTAACCTGCATATTTTGTGGCAGTGACCTGGAATGTTACATGCACATATTCTCAATTCCTGGCTCAAAAGA CACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACTCTATTGTAAACTGCCCAACCTGCACGTGTGGCTGCAAA AACAAAACAGATCCTGGAAGCTGTGTTAAGTAAGTCTCAATTTATATTTTTACAGATATCTGAAACTTTCTTTCCCTTCT TCTTTTTGTTCTTCAAAGTATGTTTCAATACTATAGTAGCTTTTATTTTTGATCATTTCCTCATTCATGTGATTGATTTA TTTTTCTGAATCCATCTTACAGTCCAGACTCCCCACATTTGTCTTCTGTTGTATCATCATCATCAAGCAAAGATATAAAT ACACCTCTAGTCCAGTGTACCAGTCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTTAATTATAAAGAGTACTG GAGGGTCAAGATCACTATTACAAATTTCAACTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATT TTGATAATCTTACCGAGATTTTCAGCTTTCAATACAAGTCACTAACACCCTATGAGGGCTTAAGTAAGTTCTTCCTTTCC ATATTCCTACATGCTCTTAATTGTGAAGAAAACATTCCAGTTCTAATGTTATTTCTTCGGATATGTTTTACAGATGATAC CGGTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTTCAGCTTCTGAAAAAAATCTTGGTAATGTGCAGTCAG AAATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTATTTCAACGGC GATAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACCAAATGCAAGTTCGAAACTAGCTTTCTCTCTACTATG TACAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACTAAACATAG
CDS sequence (LotjaGi1g1v0211100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAGTAAT TTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTTCGAAGTTCAAAGCCGGCATACCACATTGTTGTAAAA AGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGGTTGCAAATTGTTGCAAAGGTGGAGTCTTA AATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCAGATTAGTGTTGGCTCTGCCGGAACAACTAACAAAAC GGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTGGCTATACTTGTGGCCCTGCAAAAAATGTGAGACCGA CTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTGATGACCTGGAATGTTACATGCACATATTCTCAATTC CTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACTCTATTGTAAACTGCCCAACCTGCAC GTGTGGCTGCAAAAACAAAACAGATCCTGGAAGCTGTGTTAATCCAGACTCCCCACATTTGTCTTCTGTTGTATCATCAT CATCAAGCAAAGATATAAATACACCTCTAGTCCAGTGTACCAGTCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAG CTTAATTATAAAGAGTACTGGAGGGTCAAGATCACTATTACAAATTTCAACTACAGAATGAACTACTCACAATGGAACCT TGTTGTGCAGCACCCCAATTTTGATAATCTTACCGAGATTTTCAGCTTTCAATACAAGTCACTAACACCCTATGAGGGCT TAAATGATACCGGTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTTCAGCTTCTGAAAAAAATCTTGGTAAT GTGCAGTCAGAAATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTA TTTCAACGGCGATAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACCAAATGCAAGTTCGAAACTAGCTTTCT CTCTACTATGTACAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACTAA
Protein sequence (LotjaGi1g1v0211100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNFQQYRHIQAPGWSLGWTWAKKEVIWNMMGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQVANCCKGGVL NSWAQDPGNAVSSFQISVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKNVRPTKYITSDKRRITQALMTWNVTCTYSQF LAQKTPSCCVSLSSFYNDSIVNCPTCTCGCKNKTDPGSCVNPDSPHLSSVVSSSSSKDINTPLVQCTSHMCPIRVHWHVK LNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNFDNLTEIFSFQYKSLTPYEGLNDTGMLWGTKFYNDFLSSASEKNLGN VQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLCTVMATLAYLVILLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 370 | 370 | - | – | |
| PANTHER | 1 | 389 | 389 | 2.2E-234 | – | |
| PIRSF | 1 | 391 | 391 | 2.9E-222 | ||
| Pfam | 1 | 158 | 158 | 3.3E-70 | ||
| PANTHER | 1 | 389 | 389 | 2.2E-234 | ||
| TMHMM | 371 | 390 | 20 | - | – | |
| Phobius | 371 | 390 | 20 | - | – | |
| Phobius | 391 | 391 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellulose microfibril organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. | ||
| Cellular component | Anchored component of membrane | The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. |
Expression pattern of LotjaGi1g1v0211100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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