Transcript — View — Lotus Base

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LotjaGi1g1v0212900.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0212900
Transcript ID	LotjaGi1g1v0212900.1
Lotus japonicus genome version	Gifu v1.2
Description	TCP family transcription factor; TAIR: AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5; Swiss-Prot: sp\|Q9FME3\|TCP5_ARATH Transcription factor TCP5; TrEMBL-Plants: tr\|A0A151S0B6\|A0A151S0B6_CAJCA Transcription factor TCP5; Found in the gene: LotjaGi1g1v0212900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:46885559..46887877) extracted from Lotus japonicus Gifu genome v1.2.

CTCTCGGTCAAGAGACTTATGTGAATGTTGCAAAATTCCTGCTTAGTACATTTCTTTACCAAAATTCTTAATCATTATAA TTCCCTTGAAAGAATAGGTAGAAATATAGGAGTTGGGGCATGTGCTCAAATAATAAATAAACATTTAGATGCTCATTTTG GAAAGACTTTAATTTTAGGGTATTTCTATTTCTATCTCTTGCTGCACCATTTCCTACGGTGGAAAGGAAGCTTAGAACAG AATAAGCTCATAGCTTCAGGAATTTCTCTCTCCCTCTCATGTAAGTTGGTGTTGTGATTTAACATAAGCCTTATGCTTCT CATTCTTCCCATGTTTTCTACAATTTCCACATGGTTTTTGCTTCAATTTGGTTTCACAAACTATGATCATCAAATGAGTG ATTCAACTATGGAATTTATATCTTCAGTACCAGTGGAAGCTCTCAAGTTGAAACTGGAAAATTAATCAAACTTATAGGAC TTCCATGTCTCGGGAGACAACTATATTTTCTCTGAACTTTACTTTTTAATTACTCTCTCTAGTTTATGAATCAATTTCTT TTATTTACAAACAACTGAAATGGGAATGATTCTTCAATTCATATTCAACCTAGCAACAATATTTTGTGTAATCATTTAGT AAATTTCAAAACAGAAAACAAAAATTGTTTCCATTAATTCTAACAGATAAAACTTTTTTATTGTTTGTGTCAGAGGGTTA GCTTGCAGCAGCGCCATATATTGAAGATAAAAAGTAATTGAAGGAGACGACAACAACAACAAAGATGAGATAAGAGTTTT TTATGATGGCAAGTTCAAGAGAAGTTCACGAATCGAAGCAAGAGGGTGATGATGAAACATTTAACATCCCGAGACTCACC AAGGCATCGTCTTCTTCTATTCCAAGACAATGGTCAGGCTTCAAGAACCCGAGAATCGTTCGAGTGTCGCGTTCTTTTGG AGGAAAAGACAGGCACAGCAAGGTTTGCACCATAAGAGGATTGAGGGACAGAAGGATCAGGCTCTCAGTTCCGACCGCAG TTCAGCTCTATGACCTTCAAGACAAGCTTGGCCTAAACCAGCCAAGCAAAGTGGTAGATTGGTTGCTCGAAGCCACGAAA CTCGACATAGATAAGCTCCCTCCACTTCAATTCCCACAGGGCTTTTCTCAATTTCATGATTCATCAAATGCCTCAGATCT TTCTCTTGGACCCTTCTATGATTATACCAATAATTTCATGGCGAAGTCAAGGTTTTCATGGGATTTGGATTCAATGTCTA GAGTTAATAAAGGGAAGGAGGCTGCAGAAAGAGGAAAGTGGATCAAAACAAGTTATGATCATGAAAATCGTGATGGGGTT ATTGGATCAGTTGGAGTTGGAGGTGGTTATAACAACAGCTTTCAGGTTTCAACTCAGAAGCTTTTCCCCAATACCATGTC ATATAATAACAATAACTACCACTCATCAGAGCCTTCAAGTCTGTCTTTATCCCAATTTGGGAGCCATGGTGGGTTGTTTC ATTCACATTCACAGCTAGATCCTTCTCACCCAAGCAGTGTGCAATTTCCATCTTCTAATCTACCTCTACTTTCTGGTTCC CAATTCTTGTTTGCTCCAACATCTTCTGTGCCTACACCACCATCATTTTTCACTCCTTTTATGACCACTACTACTACTTC AGTGGAAAATGATCCAAGACAGTTCAACCACTTTCAGTTCCTGAACTCATCAGGTTCCTCTCAACATTTGCCCCATCCTC TCTTTCCATCTTTACACTCTCTCAATTCAACACCTATCAGGCCCTTCGCAACACCATTTAACTCGAAGCTTCTTGATTCT AATAATGATAATAAAGACAGTAACACTCGTTCTTGAAGCTTCTAACACTATTGATTCTATGCCTCCAAGTGTTGGAAAGG ATGTAAGCACTTCAGATTGGATCAGTTTCTCTGTTATCATATATATCAGTGAACTAATACTCGAAAGCTACTCAGAGAAG CTTTTTCCCATAATCGACTTTGGCTTCAGAATCAATTATAGAAGGACTTCCAATCATGCAAGGCGTACTATAATTTATGC AGTGTTAGCTAAGGTGAGTGAGTACATTCATGTCTGGGAGTACGGCAATGCTACACATATATGGGATAAATATGTAAGTG TGTGTTTTTGAATTTGTGTTTTAGCTATACACTGTTGTTGGTACAAGTTAGAATAAGTACTCAAGTTAAAATATCCTTCA TTTATTTTCTTCTATATATTCTTATATTTCAAAGATCCATAAGTTATTTAAATTAATTTTATGTGAAGTTTGCAAGGTA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0212900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGCAAGTTCAAGAGAAGTTCACGAATCGAAGCAAGAGGGTGATGATGAAACATTTAACATCCCGAGACTCACCAA GGCATCGTCTTCTTCTATTCCAAGACAATGGTCAGGCTTCAAGAACCCGAGAATCGTTCGAGTGTCGCGTTCTTTTGGAG GAAAAGACAGGCACAGCAAGGTTTGCACCATAAGAGGATTGAGGGACAGAAGGATCAGGCTCTCAGTTCCGACCGCAGTT CAGCTCTATGACCTTCAAGACAAGCTTGGCCTAAACCAGCCAAGCAAAGTGGTAGATTGGTTGCTCGAAGCCACGAAACT CGACATAGATAAGCTCCCTCCACTTCAATTCCCACAGGGCTTTTCTCAATTTCATGATTCATCAAATGCCTCAGATCTTT CTCTTGGACCCTTCTATGATTATACCAATAATTTCATGGCGAAGTCAAGGTTTTCATGGGATTTGGATTCAATGTCTAGA GTTAATAAAGGGAAGGAGGCTGCAGAAAGAGGAAAGTGGATCAAAACAAGTTATGATCATGAAAATCGTGATGGGGTTAT TGGATCAGTTGGAGTTGGAGGTGGTTATAACAACAGCTTTCAGGTTTCAACTCAGAAGCTTTTCCCCAATACCATGTCAT ATAATAACAATAACTACCACTCATCAGAGCCTTCAAGTCTGTCTTTATCCCAATTTGGGAGCCATGGTGGGTTGTTTCAT TCACATTCACAGCTAGATCCTTCTCACCCAAGCAGTGTGCAATTTCCATCTTCTAATCTACCTCTACTTTCTGGTTCCCA ATTCTTGTTTGCTCCAACATCTTCTGTGCCTACACCACCATCATTTTTCACTCCTTTTATGACCACTACTACTACTTCAG TGGAAAATGATCCAAGACAGTTCAACCACTTTCAGTTCCTGAACTCATCAGGTTCCTCTCAACATTTGCCCCATCCTCTC TTTCCATCTTTACACTCTCTCAATTCAACACCTATCAGGCCCTTCGCAACACCATTTAACTCGAAGCTTCTTGATTCTAA TAATGATAATAAAGACAGTAACACTCGTTCTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0212900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMASSREVHESKQEGDDETFNIPRLTKASSSSIPRQWSGFKNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAV QLYDLQDKLGLNQPSKVVDWLLEATKLDIDKLPPLQFPQGFSQFHDSSNASDLSLGPFYDYTNNFMAKSRFSWDLDSMSR VNKGKEAAERGKWIKTSYDHENRDGVIGSVGVGGGYNNSFQVSTQKLFPNTMSYNNNNYHSSEPSSLSLSQFGSHGGLFH SHSQLDPSHPSSVQFPSSNLPLLSGSQFLFAPTSSVPTPPSFFTPFMTTTTTSVENDPRQFNHFQFLNSSGSSQHLPHPL FPSLHSLNSTPIRPFATPFNSKLLDSNNDNKDSNTRS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	27	27	-	–
PANTHER	PTHR31072:SF119 View details on PTHR31072:SF119 Search for proteins/transripts with this domain View external data on PTHR31072:SF119	1	353	353	2.6E-106	–
PANTHER	PTHR31072 View details on PTHR31072 Search for proteins/transripts with this domain View external data on PTHR31072	1	353	353	2.6E-106	IPR005333 Show description in modal box View details on IPR005333 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	7	21	15	-	–
ProSiteProfiles	PS51369 View details on PS51369 Search for proteins/transripts with this domain View external data on PS51369	54	112	59	27.876	IPR017887 Show description in modal box View details on IPR017887 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03634 View details on PF03634 Search for proteins/transripts with this domain View external data on PF03634	54	157	104	2.3E-26	IPR017887 Show description in modal box View details on IPR017887 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	338	357	20	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0212900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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