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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0213100 |
| Transcript ID | LotjaGi1g1v0213100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|G7IZB8|G7IZB8_MEDTR Ninja-family protein AFP1; Found in the gene: LotjaGi1g1v0213100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47037176..47042373) extracted from Lotus japonicus Gifu genome v1.2.
TTCATGAACAACGCAACAGTATGACCAAAAGAAAAGCTCGATCCCTGTGTCTTCCTCTTTTCTCTGTAACCCTTCTTTCT TGTTCTCAGTCTCTTCAACTCTCTTTTTTTTCTTTTTGTTTCTCCATCATAGCATAGTGAGCCCCTTGCCCCCATTGTTT TTCTTCTATTTTATTGATTATTTTCTCATAATTCCCTGTCTGTCGTTTAAACTTGCATTATGATTCTAGCTCTATTTACT TTTTAATTTGATTTGGTTTCTTTCTGCATCGTCTCTTACACTCTTTTAACATAATTGACTAACCACATTGTAATTTTGTA CCTAACTTGTTTCTTGCAATTTTTTCCCTCAGGGAGAAACCTAATTTAGGTTGTTTTTCTGTTAAAGGATTTTTCTCAAT TTATGTCTTGTTTCAATGGAGGTAAGAAGGAAAATTAAGTTGATTTTTTTTTCAACCATGTCACAATTTATGATTTCTAT GTATCTGTCCCCCTTTTTTTGCAGATGCTTTATGGTGAGAAACAATACAACTACAACACCAGGTTACCCACAAACACCAG CAAAATAGACCTTAATCTTAAGGTTTCCCCTTGTGGTGAAAATGCAGAAGAGAGGGGGCTGATAAGGTCATCATCATTAG TGGCTGGAGAGACAGGAAAGAAGATCAGTGTGTCATCTTTGGAGAGATCTTGCTCTCTTCCAGAACATGATAAACTCAAG CAACTCACAAATCATACTTGGTATCAAAAGCTTAAAGGTAACATGTTTCTTTTCATTTCTATCTTGTTTATGTTACCTTG AGTTGTTACAGGCTTGGTTAAATTTTACCTGAGTTCCTTTATGCTATTTGATGACTATTCTTATATGGTCTTACTCCCTT TGACATGTATTTCTTTAGGTTATTGCAATAAAAAAGTAGAAAACAAATGTTCATCTCTATTTTTTGGATACACGGTGAAA AATCACGGTGAGTCAAAATCACGACAGAGAGAAGCAACTTCCCCTACCCCTAGTTTAAGTGATTGTCCACTGTGATTTTG GCTTCACTGTGTTCACCTTCCATTGATTTTCTAAATATTTTACATCAATTCAGTTTTTATGTTGTTGTTATATGTTCAAT TATGTCCTAGAGTTATTGGTGATTATTGCAAGCTTGTGTAAATGAAAAACCTAGAGGATTAGAGAAGATTCTTCAAATAG TTTCTACTTTTACATCAAACACAAATGAAACATCTTGCATTTAAAATACAAAAAAACTTGAATAAAATTTTGGCGGATTC TTGGGTGTCTCCTTGTAAAGGGTGGTGGTTCTCCCCTATTTTTAGTTACAATAGCCCATTTTTGAAGTTTCGAATTGAGA AAATTTTTGTAACACTTCAAGCACCACCATTTGTAGTGTCACTCCTTGTTAGTTTTTCACAAAAATTTTCATTCACATTG GCAACTTCAAAGAGTAAAATTCGTTTAGAATGTATCATTCATGTTGACAAATTTGAAGACTACAATTGAATTAGGGAGAT GCGTTTATGTTTGTAACACTTTAAACTCCATCAGTTGTTGTGTGGTGTCCCTGCTTGTGCGTCACTCCTTGTTACTCTTT GATCTCGCTTGTATCCCCCCTTTCTAGACTCGTGACTCCCATTTCTCTAAAATGTTATGGTTAAAATAAGTGGAAGCAAT AAAATGCAGAAGTAAGATATCTTTATAGTCGAAAGTATGAACATGACAATCACAAGTATCCTTAGAAATTGTACTTGAAT TTAGCTATGTATTACTTGTGAAGAAACTGTGCCTGACAATGTAATGAAGAAAGTTATAGTAAATCAATAGCAAGAAAATG TTATACGTATTTAATACAAAAAATTAGAGATCATAATATTACAATACATGACAATAGACAAATAAAACAATGGTAATGGT TCATATCATAGATAGCAAAAGAGTTTCTGAATTCAATTCTAAATTATAGCCATATATATATAAATTATTGGTAATAAATA CTTTTTATTAAACGTGAAACTATTTTTATATGATAATTTAGAACCATCATTTGAGATTAGTAGAATAATTGAATAGAGAT ATTATAGGAAATATAGGGGTTTGGAGTTCGGTAGTGATGAAAAAAGAGGGACTGAAAACATGGTAGGCTTCCTTATAGGC AAGTTCCATTCTAGCTATTTGGATAATGATGTACATGTTATGCATGAAAATCAAGTTGTATGATAATGCGAAGTTCATTA CTTGCAGATTGTTTTATACCAACCAGAATAAAAAATTTCTGTCATAAATGGTATTGAGCTATTATACACACAGTTTTCTT ACCTATTCCTTATTCCTTATTAGGCCATCTTTTATCATACTTTCCTTCTTAGATATCCTCGTAAATAAAGGCTCATTAAA TTAGTTTTATAGTAACAACATGTCTAAAATTTGTCATTAAATAAGGGATGTCGTGAGGTCATTTAAAGTTCAAATAATGA GTCTGAAACTGAAGTTGTATTTTTCTGCTTTTAGTGTTACAATACCTCGTCTTTATAAATATTTGCTTTATACAGGATAG TATGTTATTTCTGAGTGGTAGAAAAACCATAAAATTTAGAGAATAATAATTAAAATAAGACATTGTTTCACCCACCAACA ACATACATAACTATTTTTCCACTAGATGGAGGCTTTACATAGATCAAACTGACACCATAATTTCTTGAATGGGTTCACTC AGAAAAGAAAACAAATGAATGCAGACAAGAAATCTTAGCAAAGAAAAGATCCATGTGTCCACATGTGCTATATAATAAGC ACAATTCATTCATATGGTTAACCAATAAAGGCTTCTAACACGACATAGTTTGTTGAAAAGTGAAAACAAATGTATTTAGA TTTTCTTAAGATGTGCTTATAGGGAAAAAAAATTAACAACAACTATTTAAAATTTATTTTAATATCATTCCATATTTATA TAGTTGAGCAGTGATATCACAATCAAGTTAGTCTTGTATCAAGATCTTGGTTAATCCTTGTATGACTATTCATAATACTC CTCTGATTTTTCCGGAGTCTCAATATTCGGATGGTATTATAACTAAAACTAGGTGTGCTTTAGTTGTTGGGATGATGCCT GGAATAGTCTTTGATTGTCCAGAGAAAATTTCTTTTTCATTTTTTTCTGTCTTCTATGTATATCTGCTTTCCTTGAGTTG TTTTTACTCATTTAATAATACCTTGTTATGCTTTCAAAAAACATTACATTTCATCCTCATTGGTAGATAGTAGTTATAGT TGTAATGTTCCAAAATTTATATGTTAGAAATAAGTGATATATCAGATATGTCAAGACATCATACTTCAGATCCTCAGGTA CATTATACAAATATTAGTTTACGGGTGTACCATATTTTAGGTTATACAGATGTTTATATCATTTTATTTACTTTATGAAT CATTAGTAAGTCAATTACTTCTTGTTTTTGTTCAGTTACTTGCCCAGTACAAACTAATAAATTATTATGGATGAGACAGA ACATCCTTATTGAAGAGTATAATTGTTATACAATCTCTGACTTTGTCAGAATCTCCCCACTACTGAACATAATTCCAGAA TAAAAATCCTAATTCACCTTCTCACTAAATATTAAATACTCTACTACCTTTCTAGAGAAGATAACTACTGTCAGTTATTG ACCAATAAATCTACCAGCAGAACCAAAATAAAATTTCCAACCACAGACTAACTAATTAGCTCATGCATAACTGACCTAGG CTCGATTACAAACTATTAAATTCTCCTAGTATGCACTTTACAAATAGGAAGCCTAAATCTAGCTCTATGAGGAAATAGCC TACAAGCATGCAGCCAAGCTTACACCTCTAAACTGTTTTATCTAGAATGAACATAAATAGTTATGTAAATAAAGCTTGAA GCATAGTTTCTCTTGATATATTTACATGTTAAATTGAAGATATTTTCTTTTAGTTCTATGAATTTATGTTGAGTTTTTTT CTTGATGTTCTTGCTTTCTTCATAGCTTTCCTGGTAGTGTAAGCACGAGATCTTCTAGAGCTTCATCTTGCCTGCCTTTC TAGTGTAATAGATGATGAAAATTGTATACAATCACTTTTGTTTTTCATGAAGACCATTTTCAGAAAATGTAGACAAATGT TGTGAGTTATCAAGGTTCTGCCTTGGTCATTTTTTCACTCATGAGCAACTAGTTGCATGATTACAAGTAAATACTAAAAT AGTAAGTGACTTATCATTTTGCAGTAATGCTAAGATGGCTTTTACTGATGGTTTCTCTTACTTGTATATATCCATCAACA ATAAATGGAACAAAACATTAATTAAAGATTAAATTATTTTCATATAAGAAAATTATCTCTCTAAATATATTCAATATAAT TTTATCTTTAAGACAAAAAAATTATTGTTTATTACATTAATAGTTGCAGATACTACACACAACTAAGTTGTTTTTACTTA AACTATTTTTTCATCTGATCTGTCTTATCTGAAGCTAAATCTTTCTTCCTTGTTTTGATCCCAAAAGATACGTTCACATT TTTTCCTAAATCATTCCATGTATAGGTCCAAGACATTCAGCTGAAGGAGAAGTTATCTCCAAGAAAGAAAATGATTCCAT GGTTTCCTGGAAAACAATTGTGAAGGAAATTCCACCTAAGTCTTCTAAAACTAAACATGAGAATCCAGCCAAAAAGCTTA AGATTCCCAATTACTGCAGTCTTAAAGAGGATGCAATGGAGATCCTGAGAAAAATTCCAAGTGTGACTACTACTGGAGAT GGCCCTAATGGGAAGAGAATAGAAGGACTTTTGTACAATTATAAGTCTGGCCAAGTCACTATTGTATGTGTCTGCCATGG TAACTTCCTCACTCCAACAGAGTTCATCATGCATGCTGGAGGCAAGGAAGTGGCTAACCCCATGAAGCATATCACTGTTT ATTTTAGCTCATTTTAGAGGTCAATGTGAAGTACTTTATAAATAATCCATCTCATAATGTGGAGATAAGTGGAATGCATG AAACTCTATTTAATTATTTAGTTTCCATAATTATCTTATCTAGTCTTCAAAAAGTTGAGCTGCAAGATGCTCTAAATATG TTATGGTGGTGCATAGGGTTGTTCATAGTTTGGTTATTTAAAAAACCAAACCATATCAATTTCATATCCAGTTTGGAG
CDS sequence (LotjaGi1g1v0213100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGCTTTATGGTGAGAAACAATACAACTACAACACCAGGTTACCCACAAACACCAGCAAAATAGACCTTAATCT TAAGGTTTCCCCTTGTGGTGAAAATGCAGAAGAGAGGGGGCTGATAAGGTCATCATCATTAGTGGCTGGAGAGACAGGAA AGAAGATCAGTGTGTCATCTTTGGAGAGATCTTGCTCTCTTCCAGAACATGATAAACTCAAGCAACTCACAAATCATACT TGGTATCAAAAGCTTAAAGGTCCAAGACATTCAGCTGAAGGAGAAGTTATCTCCAAGAAAGAAAATGATTCCATGGTTTC CTGGAAAACAATTGTGAAGGAAATTCCACCTAAGTCTTCTAAAACTAAACATGAGAATCCAGCCAAAAAGCTTAAGATTC CCAATTACTGCAGTCTTAAAGAGGATGCAATGGAGATCCTGAGAAAAATTCCAAGTGTGACTACTACTGGAGATGGCCCT AATGGGAAGAGAATAGAAGGACTTTTGTACAATTATAAGTCTGGCCAAGTCACTATTGTATGTGTCTGCCATGGTAACTT CCTCACTCCAACAGAGTTCATCATGCATGCTGGAGGCAAGGAAGTGGCTAACCCCATGAAGCATATCACTGTTTATTTTA GCTCATTTTAG
Protein sequence (LotjaGi1g1v0213100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMLYGEKQYNYNTRLPTNTSKIDLNLKVSPCGENAEERGLIRSSSLVAGETGKKISVSSLERSCSLPEHDKLKQLTNHT WYQKLKGPRHSAEGEVISKKENDSMVSWKTIVKEIPPKSSKTKHENPAKKLKIPNYCSLKEDAMEILRKIPSVTTTGDGP NGKRIEGLLYNYKSGQVTIVCVCHGNFLTPTEFIMHAGGKEVANPMKHITVYFSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 76 | 71 | 1.5E-64 | – | |
| PANTHER | 6 | 76 | 71 | 1.5E-64 | ||
| PANTHER | 90 | 216 | 127 | 1.5E-64 | – | |
| PANTHER | 90 | 216 | 127 | 1.5E-64 | ||
| Pfam | 175 | 210 | 36 | 2.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0213100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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