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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0215100 |
Transcript ID | LotjaGi1g1v0215100.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Hypersensitive-induced response protein 1; TAIR: AT5G62740.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1; TrEMBL-Plants: tr|I3SUN5|I3SUN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0215100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47452685..47454235) extracted from Lotus japonicus Gifu genome v1.2.
GTTGATGCGGCTACAATTGTGGTTGCGATGCTGTTTAATGCCATGTGTTTGTATGTAATGTGTTTTTCCCAAGTAGTTAG CCTTACAAGCATGGTTTTAAACTATCAGGATTTTGGAAGTCTCCGCCCGCTACCACAATTGTGGCTGCGTCCGTGTTAGT CCTTAATTTTCTGCAATATCTAGGATTGCGACATGACAAAGCAACTGCAGCTGTTACACCAATTTAAAAACTTTCTTAGG TATTACATTTTTCCATTGAATCACAGCTGATTATAGTTTTGATGTTTATTTTGTTTCAGGATAATGTCTTTGTCAATGTT GTTGCTTCAGTGCAATATCGTGCCCTGTCTGAGAAGGCCAGTGATGCTTTCTACAAACTTAGCAATACAAAGACCCAAAT CCAAGCCTATGTTTTTGATGGTATATACCAGAACACTGCTTAATTAAAAATTTAAATTCTCAGTTAAGGTAAACTGTTGT TCTAATGGCATGCAGTAATTAGAGCAAGTGTTCCAAAACTCCTCTTGGATGATGCTTTTGAACAGAAAAATGATATCGCC AAAGCTGTGGAAGAGGAGCTTGAGAAGGTTCATTTTATGATATTAATATATAAAAATGCGAACCGTACTGGATTAACTTT AATTTGAGCCTGATGCTTAAAAGTCTTAACAGGCCATGTCAGCTTATGGATATGAAATTGTTCAAACACTGATTGTTGAT ATTGAGCCAGATGAGAACGTGAAGCGGGCTATGAATGAAATCAATGCTGGTAAGTTAAATGAGTACAACTTTAAGCATTC TAGTATAATCAGTGTTGAGGGTGTGCATGGAGCTTGTTTAGGATTTTTTTATACGCTAAGTTGATGTTTGGTTAAACTGA TAAAAATAGTTCATGACTTATTTACGAGCTCTTGTGAGCTTATTTTGACAATCTTCAACTTCTGAATAAGCGTTTGTATA TGAATGATAACTGAGTAGTGTTGTCATATGCTCTTAATTAAGTTGTTTAACTAAACACACCATATGCTCTATGGAGTAGT AACTTCTTGTTGATTCAACTGACCTCAATTTCGGCTTATTTCTGTGTTTTTATTGTTATTTTTTCTTCATGAAAAGTTGT CGTAACTAGGTGCAAGAAATCTCCAATGCTCACGGATTTCATTATTGTATTCTCATGTTTTCTTTCTGTGATCAGCTGCA AGATTGAGGCTGGCAGCTACTGATAAGGCAGAGGCAGAGAAGATCTTGCAAATCAAGCGAGCTGAGGGTGAGGCTGAGTC TAAGTACCTCCATGGTGTCGGTATTGCTCGCCAGCGTCAAGCAATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCT CCGGTAATGTACCAGGGACGACTGCAAAAGATGTCTTGGACATGGTCCTTGTCACTCAGTATTTCGACACTATGAAAGAA ATTGGTGCTACCTCCAAGTCTTCTGCTGTTTTCATTCCCCATGGACCCGGTGCTGTTCGTGATGTAGCAAGCCAAATTCG TGATGGACTTCTTCAGGCTTCTCATCACTAG
CDS sequence (LotjaGi1g1v0215100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCTTATGGATATGAAATTGTTCAAACACTGATTGTTGATATTGAGCCAGATGAGAACGTGAAGCGGGCTATGAA TGAAATCAATGCTGCTGCAAGATTGAGGCTGGCAGCTACTGATAAGGCAGAGGCAGAGAAGATCTTGCAAATCAAGCGAG CTGAGGGTGAGGCTGAGTCTAAGTACCTCCATGGTGTCGGTATTGCTCGCCAGCGTCAAGCAATTGTGGATGGTTTGAGA GACAGCGTGCTCGGATTCTCCGGTAATGTACCAGGGACGACTGCAAAAGATGTCTTGGACATGGTCCTTGTCACTCAGTA TTTCGACACTATGAAAGAAATTGGTGCTACCTCCAAGTCTTCTGCTGTTTTCATTCCCCATGGACCCGGTGCTGTTCGTG ATGTAGCAAGCCAAATTCGTGATGGACTTCTTCAGGCTTCTCATCACTAG
Protein sequence (LotjaGi1g1v0215100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRLAATDKAEAEKILQIKRAEGEAESKYLHGVGIARQRQAIVDGLR DSVLGFSGNVPGTTAKDVLDMVLVTQYFDTMKEIGATSKSSAVFIPHGPGAVRDVASQIRDGLLQASHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 149 | 149 | 1.1E-95 | – | |
PANTHER | 1 | 149 | 149 | 1.1E-95 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0215100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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