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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0220000 |
| Transcript ID | LotjaGi1g1v0220000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit; TAIR: AT5G62440.1 EMB514 (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|V7AZY8|V7AZY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0220000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48942769..48945899) extracted from Lotus japonicus Gifu genome v1.2.
GTTACATACTATTTAAAATAGGAAACGAAACCCCGTCTTAGTTAGGGTGTCCTCAGTAGCAACTATCGCCATCATAATCT AATCTAGGGTTTCAGAGTCTCACTCTCATGGCAGAAGAAACCGCACCGGAACTCGTAGATCCCAACACTCCCGCCGCCGC CACCACCACCACCGTAGACATGGACGTCGAAAGCGGCGCCGAACCCGACCACAAGCGTGAGAGGGAGGAAGAGGGTTCCC ACGACGACGTCGTTGCGAAGAAGCAGAAGGTGGACGAGGAAAAATCGGTGGAAGAACAACGGTTGGAGAAGGTGGAAGGT GAAGGAGAAGAGCAAGAAGAAGAAGCAGAGAAGGAAGGTTCAGTTCCTGATCCCATCAAGTTGGGATTCAAAAGCTTCGC GTCTTCCTCGGAGATGTTCCATTACTTCTTCAACTTTCTTCATGCCTGGCCTCAATCTATCAATGTTAACGAGGTATTGC AATTTGCAACTACTACTACTCTGTTCTCGCTATTTCATTGCAATTTATGTTCTCTTTGTGTTGATGGCACGCATGATTTG TTTTGATTGTCAATACATGAATGATGCTATTAAAAACAGAAAATTATGAATAGAACAAAGGGTGAAATTTTTCGCGCAAT TCGAATGGACTAGACTTGTGACTTGTCTTAATTAATTCCTTGGAGAAAAAAGGGGGAAAGGAATAGAAATCAGAGAAAAC AAAAGGTGAAATTTTGTGTAATTAATCATGGGTACAGATTCGAATGGACAAGACGTGACTTAATTATTTGACATTGTGAT TTTCCCCTATCTTGGTTCTAGGAATTTCTTTAGATTGATTTTCTATAAGTAGGAATTTCTGAAAATAGTTAATGCCCAGA TAGATTTTTTCATTTTTTATCTTGTAAAAACGAAGGTATACCTGGTTACTCTGATGTGTAGCATTGTGAGATTCGTTTCT GTTCATTTTGGTTTTTGATTGAATTAACTCACTCTTGATAAGTTGGGTTACTTTACTCAGTCTGAGAGCTGTTGCTTCAT AAGTTGGGTATTACTTCAGTCTCAAAGTTCAATCTCACCTTCTAGACACTGGAGAAGCTTTGCAAGCAATGTGGTAAAAG AAGACACTTGTTATCTATTAATGTCCTGTTTGGATACGGACTAAAAGCACTGATTGGAGCTTATCTACAAGAAAAAGCAC TAGATAAGCTCCAACATGTTTTGGTCCGCATCCAAACTGGCTCTATGCCTTTGAAAATTGAGTCTACTGGTCTTCAATTG CAGCTTCTATATGCAATATAGGTGCCTTTGAAAATTGAGTCTACTGGTCTTCAATTGCAGCTTCTATATGCAATATAGGT GCCTTCTTGTTGCTAGAAGAACATTTGCTAGCCAGCCATCTTTGCTGCAATCTATCAACATAATGTCACTGTTATAGTGG CAGTTTCCTTGCATAGGTTTCCCATAAGTTAGCTAGAATATGTTGTTTTATTGCAAGGGTTCTTGAATTGCTGTTCATTA CCACCAGAATGTGATTTGACAGTTCAGTTTTACCGCATATTTGCATGTCAGGCTAGGATGCACAGGTACGGGTGCGGTAC CGGGTGCGGGTACGGTACCGGGTACGAGGTACGACATTTTTAGAAAATCCTAGGTACGGGTACGTTATAGGTACGTTAAT ATATATATATTAAAAAAAATATAAATATATATATAGTGAAGTATAAAAATAGATATCAAATAATCTATGTTACATAATAT TATTAATTACATATAAAATCTCTCAATATTCATATATCTTGCATATAGTAACAATTCAAACACATGGTAAAGCTTGTAAA AAAAAACACATGGTTTCAAAGTACCATGGCGTACACCCACGGAGTACCGGTACCCGGTGCGGGTGCATAGCCAGTTTCAA AGTACCCGTGCTTCACAGATGTCAGGATTCGTATGTTGAACTTCATGATGCCAAATGCCACCTGAGTGTTCAAATTTGGA TGTAGCACAATTCTTTTAGAATGTTGTTCTCACTATTCAGTTTTATAACTTGATGTTAAAGTAGCTGCAATCCTGCAACC TTAATTTTTTTCTTGCTGAATCCACATTGATTTGTTGTGTTGCAGTACGAACATATGATGTTGTTGGAATTGCTTAAGAA AGGGCATGCAGAGGCTGATAGGAAGATTGGTGGAGGGATTCGCGCTTTCCAAGTCCGCAAGCATCCCGCCTTTAGTAGCA GGTGCTTTTTCCTAATCAGGGAGGACGGCTCTACTGACGATTTCAGCTTCCGAAAGTGTGTGGATCATATTCTTCCCTTG CCAGAAGATTTGCATGTGAAATCTGAGGCGAACAAGGCGCGAGGTGGCGGTGGAGGGGGAGGAAAGCATCATGGAGGAAA AGGGGGCAGAGGGAGGGGTGGGAGAGGTAGTGGGCGTGCTTATGGGAGAGGAGGAAAGGGGAGATATTGAATGCAGTAGT TACTGATGGTCCGGGTTTTATTTTGAGATCTTAAATGTTTTCTGTATGTGGCTGGTGCATGTCATGTTTCCTGCAAGTAA TTTATAATTTAGATTTTGACATTTTGGTTGGCTATAGCCTATAAGTTATGAAGTTTTTGGGCTATATACCACGACTCAGA ATTATTTTTTTTTAATGGCGGAAACTACGCAGCTGAATGAGCAGTGGGTTTAGTTTGCTGGACTTGATAAGAAATGTTTT GACTCAAAACTTGAGTTTGATATGAACCATTTTTTCCATTGAACTTGACTCGAATGAAGCATGTGAATTGTTCCATTCAG CAGCTCGTTTGAATAACATGAACCAAACTTGTTGAGCAGCACTTGAGAGCGGTAAGACTAGATGGTGACTAGTGTTGATT GGTTTGGATCAATTAGATGAAATCGATGATCCAAATCAACATAATTTGTTCATGTTTATTGGGATAATGGTTCGTTTAAG TTAAATCAGAACCAAACTAATTGTTTTCATATTAGTTATAATCTTTGGTTTTGGCCCCTTAATCTAAAGTTTTGGCTTGC TGCCGGTAATCAAGGACTAATTTAAAAATTGCAAAAAAGGAAAAATTCAAATTAGAGAGCAAATATCTAATCATCAATTA GTGCCGTCCGC
CDS sequence (LotjaGi1g1v0220000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGAAACCGCACCGGAACTCGTAGATCCCAACACTCCCGCCGCCGCCACCACCACCACCGTAGACATGGACGT CGAAAGCGGCGCCGAACCCGACCACAAGCGTGAGAGGGAGGAAGAGGGTTCCCACGACGACGTCGTTGCGAAGAAGCAGA AGGTGGACGAGGAAAAATCGGTGGAAGAACAACGGTTGGAGAAGGTGGAAGGTGAAGGAGAAGAGCAAGAAGAAGAAGCA GAGAAGGAAGGTTCAGTTCCTGATCCCATCAAGTTGGGATTCAAAAGCTTCGCGTCTTCCTCGGAGATGTTCCATTACTT CTTCAACTTTCTTCATGCCTGGCCTCAATCTATCAATGTTAACGAGTACGAACATATGATGTTGTTGGAATTGCTTAAGA AAGGGCATGCAGAGGCTGATAGGAAGATTGGTGGAGGGATTCGCGCTTTCCAAGTCCGCAAGCATCCCGCCTTTAGTAGC AGGTGCTTTTTCCTAATCAGGGAGGACGGCTCTACTGACGATTTCAGCTTCCGAAAGTGTGTGGATCATATTCTTCCCTT GCCAGAAGATTTGCATGTGAAATCTGAGGCGAACAAGGCGCGAGGTGGCGGTGGAGGGGGAGGAAAGCATCATGGAGGAA AAGGGGGCAGAGGGAGGGGTGGGAGAGGTAGTGGGCGTGCTTATGGGAGAGGAGGAAAGGGGAGATATTGA
Protein sequence (LotjaGi1g1v0220000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEETAPELVDPNTPAAATTTTVDMDVESGAEPDHKREREEEGSHDDVVAKKQKVDEEKSVEEQRLEKVEGEGEEQEEEA EKEGSVPDPIKLGFKSFASSSEMFHYFFNFLHAWPQSINVNEYEHMMLLELLKKGHAEADRKIGGGIRAFQVRKHPAFSS RCFFLIREDGSTDDFSFRKCVDHILPLPEDLHVKSEANKARGGGGGGGKHHGGKGGRGRGGRGSGRAYGRGGKGRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 88 | 88 | - | – | |
| PANTHER | 7 | 235 | 229 | 4.7E-82 | – | |
| PANTHER | 7 | 235 | 229 | 4.7E-82 | – | |
| MobiDBLite | 28 | 71 | 44 | - | – | |
| Coils | 52 | 79 | 28 | - | – | |
| Gene3D | 86 | 185 | 100 | 1.2E-29 | – | |
| Pfam | 109 | 181 | 73 | 4.5E-24 | – | |
| MobiDBLite | 197 | 236 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0220000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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