Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR33415
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0343529.1
n.a. Protein DCL [Medicago truncatula] gi|357515123|ref|XP_003627850.1| chr0 180084520 180087136 +
1 domain prediction
 –
Lj0g3v0348139.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr0 182699025 182703297 -
1 domain prediction
 –
Lj0g3v0361049.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Cicer arietinum] gi|502126879|ref|XP_004499475.1| chr0 190198547 190201217 +
1 domain prediction
 –
Lj0g3v0361059.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Cicer arietinum] gi|502126879|ref|XP_004499475.1| chr0 190198547 190201721 +
1 domain prediction
 –
Lj1g3v1650160.1
n.a. Protein DCL [Medicago truncatula] gi|357465527|ref|XP_003603048.1| chr1 19789426 19793964 +
1 domain prediction
 –
Lj1g3v1686750.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr1 20027328 20030448 +
1 domain prediction
 –
Lj1g3v1686770.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr1 20032332 20034853 +
1 domain prediction
 –
Lj1g3v1686780.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Glycine max] gi|356509751|ref|XP_003523609.1| chr1 20036455 20040727 +
1 domain prediction
 –
Lj4g3v1635280.1
n.a. PREDICTED: protein DCL, chloroplastic-like [Cicer arietinum] gi|502152038|ref|XP_004508733.1| chr4 24037136 24039278 +
1 domain prediction
 –
Lj4g3v1635280.2
n.a. Uncharacterized protein TCM_014003 [Theobroma cacao] gi|508774600|gb|EOY21856.1| chr4 24037460 24039278 +
1 domain prediction
 –
LotjaGi1g1v0220000.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT5G62440.1 EMB514 (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|V7AZY8|V7AZY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0220000 LjG1.1_chr1 48942769 48945899 +
1 domain prediction
 –
LotjaGi1g1v0355300.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G45230.1 DCL protein (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|I3S0R7|I3S0R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0355300 LjG1.1_chr1 82672630 82677907 +
1 domain prediction
 –
LotjaGi1g1v0357800.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT3G46630.1 DCL protein (DUF3223); Swiss-Prot: sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic; TrEMBL-Plants: tr|A0A0S3RB30|A0A0S3RB30_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0357800 LjG1.1_chr1 83153487 83156743 +
1 domain prediction
 –
LotjaGi4g1v0249400.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT5G62440.1 EMB514 (DUF3223); Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|A0A0B2QEQ7|A0A0B2QEQ7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0249400 LjG1.1_chr4 60243919 60246048 +
1 domain prediction
 –