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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0220400 |
| Transcript ID | LotjaGi1g1v0220400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT5G38590.2 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FFW2|FBD17_ARATH FBD-associated F-box protein At5g38590; TrEMBL-Plants: tr|G7JSX5|G7JSX5_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi1g1v0220400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48998187..49000936) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTGAACCAAACAAAATAAATTTTTAAAAGCCCCTCCCCTCCCCTCCCCTCCCCTCCCGTCCAACCAAACAATTGCTT ACCTTCCGCTCAAATTATTTTAGAGGAAAAAGTATATATTTGGAAAACTTGATAGCGGTTACTATCCATTCATTCGTTTC ACCAGCAAGCTAGGGTTTATGGTTCTGATTTGAATCAGCCAAACTAGCAACTCAATTACAAGGTATTTCTAGTTTCCCTG ATTATCATGCTTGCAGATACTTAGGGTTTTTCCCCCAATTGTTTCCCAATGCAATTGAACATGACTTTACTTTGTTTTGA AAATCTGCTGTATAATTACGTATTCGTTTAGGTTGCAGAAGAAGGGTATTAGTTTTGGTAACATCCTCGCACATTCTCTC ACCATCTAAATTTACCGCACTTATGTTTGCGGGAAAGAATTACATACTGCATTTATGATTGCGGAATACAAACCATACCT TCCGCAATCAGGTTTGCGGAAAAATGTAAAATCAGGATGGTATTAGAATGTAAAGGGTGGTACCAAAATTAATGCCCGCA GAAGAATCTTTTGATAATTTTTTTCCTTTTTTATGCTTAGGTAGTTATCTGAATGTCTAATTCAACTGATGAGATGTTGA TTCCGCCGAATGCGAAGAGAGGAAGGAACAGTGAGAATGAAAATGAAGACAACAAAGACAGGCTCAGTGACCTTCCTGAT GGCATTCTCCTTCACATTTTATCATTTATGAATGCCAAATATGCAGTTCAAACATGTATCTTATCGGCTAGATGGAAGGA TCTCTGGAAACACCTTCCAACCCTTATGTTATGCTCCTCAAATCCCAAGCATTTCACCAAATTTGTGTCTACAATTTTGA CTCTTCGGGATGGCTCAACTGCACTGCACGGACTTGATTTTTATAGTATTAGTCCCATGGAGCCTCAGTTCGTCAAAAAG ACATTAGACTACGCCGTTTCTCACAATGTCCAGCGATTAGAAATGAATGTTAATTGTGACATGCAGCACCTGCTACCTTG CATTTTCACATGTCATACTTTAACATCTCTTAAGCTCACAGTCAGTGGTCGGCGCACCTTATTTCCTAAACATCTGAATT TGCCAGCATTAACCACCTTGCATCTGGTGAATTTCACCTTTTGTTCAAGCGGCAGCGACAGTGCCCGTGCCGATCCATTT TTGCTGTTTAACAGGTTGGAGAGTTTGATTATGGATCGATGTGACCTAAAGGATGCACAAATCCTCTGCATATCAAGCAA AACACTCGTCAATTTAACTTTGCGTTATCCTCTTTTGTACATCTACACAATTGAGCTATCCGCACCATGTCTTTATAGGT TCACTTGCACATATTTTCCTTCTCAGTTCTTCTGTGGGAGCGGTCTTCCTTCTGTTAAGGAAGTGAATATTGATGCAAAA CTGTTTTTAGATGAAAGGGAGCCTCCCTTGATTCTACTTACCTGGCTGCAAGATCTTGTTAATGTAAGATTATTGACTGT TACTACAAGTACTCTTCAGGTACCTTGGCATTTTTTGAGGCTTTGTATTTACTTTCTTCTGAAGATGCTTTTTGATTTCA TTTTTATGTTATTGACTTGCATTATCTTATTCACCCTCATTGCTTAGGTTCTCTTCTTAGTTCCTCATTTATTGAAGATT AAGCACTCTTCATTGGCTAACTTGAAGAGATTGATAATAAGACAAGAACAACTTTCACTTAAGCTGAGAATGATAATGAG GAGTGCGAGGTTAGAGAGAGCAGCTACTGTGTCACTGGAAGAAGCTGCCAAGTTGCGGAAAGAAGCTGCCATGTTATTGG AAACACTATTTGACCGAACTGCACCTTTACCCCCTTTACCTGATGGAATAGTGAACTTTTTGATTCAAAACTCGCCTTCA GCAGAAGTTGAAATCATAGATTGCTTAATTTGAACCAATTCAACTTTTTGAAGGTAATATGATATGGTTTTTGCTTCCTT CCTCGTTCTGTAGTTTCTCGCGTTTACTGAAAGAGTGTTATTGGTGTTTTGATGAGAACAAGAAAATACTAATTCTTAAA TGTTGAAGTAACATTAGAAGTAGAATCTGAGTGCGGTTAATTATTTGTTTTTGTCAATTTTGCTATATTTTATTTCAACA TTTGTTCTGGTTAAAGAAAAACAATAAATACAACATTGGATCAATTTGATTAGATTCTTTTTAATATTTTGAAGGATGAG GTACATAACGACCTGGTATTTTCTTGCCTATAGTTTCCTTCTATAAATGAGAAACAAACCTTTTACTAACTTGACAAATA AAAACCAAACGAATTACTTTGTAGGTCTTTAGGCAGCATATACAGATTCTGGAGCTTATTCAACATCCAATATCATTGTT TCAAAAAGAGTAATGGAAGGTTTCATCCTTGCATCCATTACTGATATTGAATTTGATGCATCCTTGTGTTGTTCCGGTCT TGATCAAGTTCTTTATCTTTTAAGTATTTTTATGTACTTTCCTTCGGAACTTTGCTATTTACTTTGCTGTTACTTGTTGA GATTTTCAGCATTAAACATTCCTGTAAAGAACTGGATACCTTAACCATGTCTGCATGGTTAATTAGTCATAGCATCTGTA TGCAAAGTATTCATCCCATGCTGTGAAATTGAGCAGAGGTATCAGCTTCTGCATCAAGCATTATCTTCATCATTTTCTCC CTTCTATATTTGGCCAGAAAAACAGGGTAA
CDS sequence (LotjaGi1g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAATTCAACTGATGAGATGTTGATTCCGCCGAATGCGAAGAGAGGAAGGAACAGTGAGAATGAAAATGAAGACAA CAAAGACAGGCTCAGTGACCTTCCTGATGGCATTCTCCTTCACATTTTATCATTTATGAATGCCAAATATGCAGTTCAAA CATGTATCTTATCGGCTAGATGGAAGGATCTCTGGAAACACCTTCCAACCCTTATGTTATGCTCCTCAAATCCCAAGCAT TTCACCAAATTTGTGTCTACAATTTTGACTCTTCGGGATGGCTCAACTGCACTGCACGGACTTGATTTTTATAGTATTAG TCCCATGGAGCCTCAGTTCGTCAAAAAGACATTAGACTACGCCGTTTCTCACAATGTCCAGCGATTAGAAATGAATGTTA ATTGTGACATGCAGCACCTGCTACCTTGCATTTTCACATGTCATACTTTAACATCTCTTAAGCTCACAGTCAGTGGTCGG CGCACCTTATTTCCTAAACATCTGAATTTGCCAGCATTAACCACCTTGCATCTGGTGAATTTCACCTTTTGTTCAAGCGG CAGCGACAGTGCCCGTGCCGATCCATTTTTGCTGTTTAACAGGTTGGAGAGTTTGATTATGGATCGATGTGACCTAAAGG ATGCACAAATCCTCTGCATATCAAGCAAAACACTCGTCAATTTAACTTTGCGTTATCCTCTTTTGTACATCTACACAATT GAGCTATCCGCACCATGTCTTTATAGGTTCACTTGCACATATTTTCCTTCTCAGTTCTTCTGTGGGAGCGGTCTTCCTTC TGTTAAGGAAGTGAATATTGATGCAAAACTGTTTTTAGATGAAAGGGAGCCTCCCTTGATTCTACTTACCTGGCTGCAAG ATCTTGTTAATGTAAGATTATTGACTGTTACTACAAGTACTCTTCAGGTTCTCTTCTTAGTTCCTCATTTATTGAAGATT AAGCACTCTTCATTGGCTAACTTGAAGAGATTGATAATAAGACAAGAACAACTTTCACTTAAGCTGAGAATGATAATGAG GAGTGCGAGGTTAGAGAGAGCAGCTACTGTGTCACTGGAAGAAGCTGCCAAGTTGCGGAAAGAAGCTGCCATGTTATTGG AAACACTATTTGACCGAACTGCACCTTTACCCCCTTTACCTGATGGAATAGTGAACTTTTTGATTCAAAACTCGCCTTCA GCAGAAGTTGAAATCATAGATTGCTTAATTTGA
Protein sequence (LotjaGi1g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSTDEMLIPPNAKRGRNSENENEDNKDRLSDLPDGILLHILSFMNAKYAVQTCILSARWKDLWKHLPTLMLCSSNPKH FTKFVSTILTLRDGSTALHGLDFYSISPMEPQFVKKTLDYAVSHNVQRLEMNVNCDMQHLLPCIFTCHTLTSLKLTVSGR RTLFPKHLNLPALTTLHLVNFTFCSSGSDSARADPFLLFNRLESLIMDRCDLKDAQILCISSKTLVNLTLRYPLLYIYTI ELSAPCLYRFTCTYFPSQFFCGSGLPSVKEVNIDAKLFLDEREPPLILLTWLQDLVNVRLLTVTTSTLQVLFLVPHLLKI KHSSLANLKRLIIRQEQLSLKLRMIMRSARLERAATVSLEEAAKLRKEAAMLLETLFDRTAPLPPLPDGIVNFLIQNSPS AEVEIIDCLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Gene3D | 25 | 359 | 335 | 3.7E-13 | ||
| PANTHER | 26 | 405 | 380 | 2.7E-81 | – | |
| PANTHER | 26 | 405 | 380 | 2.7E-81 | – | |
| SUPERFAMILY | 28 | 82 | 55 | 6.41E-11 | ||
| Pfam | 30 | 68 | 39 | 1.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0220400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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