Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0222300.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0222300
Transcript ID	LotjaGi1g1v0222300.1
Lotus japonicus genome version	Gifu v1.2
Description	NAC domain protein,; TAIR: AT5G61430.1 NAC domain containing protein 100; Swiss-Prot: sp\|Q9FLJ2\|NC100_ARATH NAC domain-containing protein 100; TrEMBL-Plants: tr\|A0A0L9TRS4\|A0A0L9TRS4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0222300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:49442852..49445340) extracted from Lotus japonicus Gifu genome v1.2.

CTTACAACGCAAGCACTTTAGATTATCATAATTACATGCATGGTATTTGGGCATGGTGGTTTAATTTTGAGTCACAACAA TTTTATTTAGAGGGATAGAATATCATGATGGCACAAAAAACTTACAGGTGTGGGCTATAGACAACCAACCAGGTTGTCTT TATAATTTCCACGTTTCTTTCTCTCCAAATCACACACCACTATTTAGGGCCTTCTTTTTCTCTCTGCTATTTTTCTAACA TCTTCACCACCAATTTTCAGTTCCATGATTTTCACCATCCTTCCCTTTTCTCTCTCACTTTCTGTGTACTTTCATGTGTT ACCAGATTGTCTTTTATAGATTCTTCTCAATTCAGTTCTTTCTCCCCTACCAAGTTGTTTCACTCAGAAAACACCCTTTT GAGGTTTAAGGGATTGTACAAGGTGATCCTTTATAAATTGGTTTTTTCTTTTCTTTTCTCTCCATTGAAATTCTCAGCTG AGAAAGCAAGAGGGTTGGTTCTTAGCTTGGATCAGATGGATTTGCCAACTGGGTTTAGGTTTCACCCAACTGATGAAGAG CTTATCAGTCAGTACCTTTACAAAAAGGTTACTGACACAAATTTTTCTTCTATAGCCATTGGAGATGTGGATTTGAACAG GTCTGAGCCTTGGGATTTGCCATGTAAGTATCAAAAACAGAAAACAAAAAATCCAGCCTATTTTAATTTTTGGTTAAAAG TCGCCACAAATCTGAGTGTCTGTTGTGTGTCGGCGAATGTCTCTCAGCATCATTATTCATGTCCATTTTCTTTGGTTATC TGATGTGTGCATTTTTGGTTGCAGGTAAAGCTAAAATGGGGGAGAAAGAGTGGTACTTTTTCTGTGTGAAGGACAGAAAA TACCCAACTGGGCTAAGGACAAACAGAGCAACTGAAGCAGGGTACTGGAAGGCCACAGGGAAAGATAAAGAGATTTACAG AGGAAAATCTCTCGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCTAAAGGTGAAAAATCCAACTGGG TCATGCATGAGTACAGGCTTGAGGGTAAATTCTCTGTTCCCAACCTCCCCAAAACTGCAAAGGTAATTAATCTGGATACC CCTTTTTCCCTATGTTCTAGTGTGTCTTAAAATTCAGGTTAGGCCTAACTTTACCGATTAGGCATAACCCGAAACCCGAA TTCTAATATTGTATCATAGCCTCTGACACACGAGAATTCTGATTGCAGAACGAGTGGGTGCTGTGCAGGGTGTTTCACAA GATTGCAGCAGGAAAGAAGACCAATATTTCTGGGATAATGAGATTGGGATCTTTTGGAAATGAATTGGGTTCCTTTGTTC TTCCACCCTTGACAGAAACACCACCTTCCATTGTTGACAAGACCAAACCACAGCGCGAATCGGCTTACGTGCCCTGCTTC TCCAATCCTATTGATGATGATGATGATCAAAGAATCCAAGGTGGGATCTTTGATTCCTTCAGCAACTCAACTCTTCCAAG AACCCCACTCTCTACTGGTGGTAATTCTTCATTCTTCTCTGCTCAAGGGGTTCAAGCCCCATCAAATTTGCCATCACCGG GTTCTGTGTACAGCATCCAGGACCAGACGATCCTCACAGCTTTACTTGATAACCATGGATCATACTTGAGGAACAGTTTC AATTTCAAACCAGAAGAGGATCAAACAGATGTGAACACTGGATTCTCTTCTTCTGTTGTGACAAATCAGCAGTATCCACC TGCTCCAGCTGCAGCACCAATGGACCTAGCTAGCTTGTGGGGTTACTAAATTGAAAAAGAAAACCAACTTTTCAGCTGAA AAGAATTTGGGAAAAGAACTTCAATTATTAGTTTATTCTCTGGATTTGATGTTGTTATTGTTATTGTTATTGTTTATTAC TTGTCTGTCTAGTTTTTAAGAATTACTGTCAAGTTACGCTGTTTTGGTCCTTTTGATACTTCAGGTTTGCTATGCTCATC ATTATTGTGTACCAGTTTGGATAACTAGAATGAGACATTATTGTTGATGATCTTATTAATTTGTTTCTTGATTCTGTCGA CTAGAATGGAGAGAATGACATTTGCTTCTGGTGATATTATATTTGAATTGCAATGTTGTAAATTATTGAATGTGGGGGCT ACTGAATCTAGTACGGTATTTGATTGAAGAAATTAAATCTTTCAAGTTTCAATTCTCTCTGTCCTTGCTGTAAACACGTG CATGCTCATCCTTTGACATGGACACAAATTTATTAACAAAAGTTATCTGCATTGCCATTGAGTGAAGCTCCAATTGATAT GATTCAAGGACCTTGAAATATTGAAGCTCCTCTCTCTCTCCCTTCCCTTTCATGCGCGTGTATGGATGGTAGGATATGAC ATGATATGACAGTTTGTTTCATTGTCAAAAACATACTCAAAACCCAATCAATATGAAGGCATACTCTACTAATAATGTTG AAATTTCAC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0222300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTTGCCAACTGGGTTTAGGTTTCACCCAACTGATGAAGAGCTTATCAGTCAGTACCTTTACAAAAAGGTTACTGA CACAAATTTTTCTTCTATAGCCATTGGAGATGTGGATTTGAACAGGTCTGAGCCTTGGGATTTGCCATGTAAAGCTAAAA TGGGGGAGAAAGAGTGGTACTTTTTCTGTGTGAAGGACAGAAAATACCCAACTGGGCTAAGGACAAACAGAGCAACTGAA GCAGGGTACTGGAAGGCCACAGGGAAAGATAAAGAGATTTACAGAGGAAAATCTCTCGTTGGAATGAAGAAAACTCTGGT TTTCTACAAAGGAAGAGCACCTAAAGGTGAAAAATCCAACTGGGTCATGCATGAGTACAGGCTTGAGGGTAAATTCTCTG TTCCCAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGCTGTGCAGGGTGTTTCACAAGATTGCAGCAGGAAAGAAGACC AATATTTCTGGGATAATGAGATTGGGATCTTTTGGAAATGAATTGGGTTCCTTTGTTCTTCCACCCTTGACAGAAACACC ACCTTCCATTGTTGACAAGACCAAACCACAGCGCGAATCGGCTTACGTGCCCTGCTTCTCCAATCCTATTGATGATGATG ATGATCAAAGAATCCAAGGTGGGATCTTTGATTCCTTCAGCAACTCAACTCTTCCAAGAACCCCACTCTCTACTGGTGGT AATTCTTCATTCTTCTCTGCTCAAGGGGTTCAAGCCCCATCAAATTTGCCATCACCGGGTTCTGTGTACAGCATCCAGGA CCAGACGATCCTCACAGCTTTACTTGATAACCATGGATCATACTTGAGGAACAGTTTCAATTTCAAACCAGAAGAGGATC AAACAGATGTGAACACTGGATTCTCTTCTTCTGTTGTGACAAATCAGCAGTATCCACCTGCTCCAGCTGCAGCACCAATG GACCTAGCTAGCTTGTGGGGTTACTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0222300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLPTGFRFHPTDEELISQYLYKKVTDTNFSSIAIGDVDLNRSEPWDLPCKAKMGEKEWYFFCVKDRKYPTGLRTNRATE AGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVPNLPKTAKNEWVLCRVFHKIAAGKKT NISGIMRLGSFGNELGSFVLPPLTETPPSIVDKTKPQRESAYVPCFSNPIDDDDDQRIQGGIFDSFSNSTLPRTPLSTGG NSSFFSAQGVQAPSNLPSPGSVYSIQDQTILTALLDNHGSYLRNSFNFKPEEDQTDVNTGFSSSVVTNQQYPPAPAAAPM DLASLWGY

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31744 View details on PTHR31744 Search for proteins/transripts with this domain View external data on PTHR31744	1	328	328	3.4E-122	–
PANTHER	PTHR31744:SF104 View details on PTHR31744:SF104 Search for proteins/transripts with this domain View external data on PTHR31744:SF104	1	328	328	3.4E-122	–
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	2	153	152	3.92E-61	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	3	153	151	58.324	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	4	128	125	9.9E-39	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.310.150 View details on G3DSA:3.30.310.150 Search for proteins/transripts with this domain View external data on G3DSA:3.30.310.150	12	158	147	1.5E-58	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0222300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…