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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0229400 |
| Transcript ID | LotjaGi1g1v0229400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A0A072UZM7|A0A072UZM7_MEDTR Sieve element occlusion protein; Found in the gene: LotjaGi1g1v0229400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:53278623..53283669) extracted from Lotus japonicus Gifu genome v1.2.
GAACCAAGTACACTAATTTCTCATTGTGTTCTGTTCTGGTCCAAGTGACATTATGGCTAGCAATCCTCACTCGCATGCCC CTAGGAAGATGCAACAGAGAAAGGAACGACGCATGTTCTCCGCTTCTGATGACAGTGCCATGATGAAACAAGTGCAGGGA ACTCATGCCCCTGATGGTCGTGAAATTGATGTTAAACACATTATTCAAATAGTGGATGAAATCTTGATTCAAGTCATTGC TCGCGGTGTTGAGGGTCATGATGTAAAAGACAACACTGTCACATGTTTTTGTTAAAATTCAATTTTTTTTATTTTTTTTA TCGTACTTTGCTTTGATTTGTTGTATGTGTACAAATCATTTAGAACCTTTTTTAATGTTTAGTGTTACAATTGTGTTCCA TTTGCAGGTAAAGAGAGAGCAAGAAACATTGGAGATTTCTGCTGCTTTGGCTGAATTTGACATGCTAGATTCTCTGGCTA TTGTCATAAACAAAATTTCTTGCGAGGTTGGTTTGTTTGGCATGAAACTTTTAACTTTTGTGAAAGTTAAATGTTACTAT TTGTTACTATTGTCTAGGATAAAATGCGTTTCTTTTAACTGACAAATCCGTTGCTGTTGATAAAGGCGTAGAAGAGTGAT ACTTTTCCTTGTTTTACTTTGCATTGAATATACTTTTCTTTGATTCCAAGGGCAGAGTTACATTGTTAATTTATAAATGA AAAACACACTTCTTTTTCCTTTGCTTTTAATGCTGCAAAGCAAATCCTATAATTAGAGCCTTTGGTTTTGTCTTTTGGAA TTCGTTGAACTATTTTTTCTAACATCTAATAATTGCATATAAAATAATAATAATATAAAATGGTTTAAAAAAATAAATAT AATAAAAAATAACTAACGTGTCTTTCATCCAACAAGTGCAAGTCGAAAACTCTTTTCAAGCCACAACGATTTTGGTTTCA TCGTGATTTTCAAACACGTATTTAAACATGCACTTAAGTTTTTTGAATAGTTGTTGTTAGTATATAATATAAAACTATTA AAGCGATCATTACCCAACAGTTAAGCGATCATTACCCAACAGTTAAACTTTTGGGATAAGTGGTTACTTGACATGGTATT AGAGTCTCTATGACCGAGAGGTCTAAAGTTCGATCCTTGCTCTCCTTTCTTTCTAATTAAAAAGTGGAATATAATTAAGC ACACAGTAGGCGAGCCTTTGCATTTATCTACACTTCAGTCACGAAGGGCTCTTGCATGAGGGGGCGTGTTAGAGTTACTT GACTATTGCTTCATGACATTGTATCAAAGGTCATTTATGATTAAGTGATTTTCAATCTTTATTGCCTTAATTATTCTAAT AAAAAATTGAATTTCAAATAGGTGAGTTACACTTCAATGACATATTAGAAATATAATATGTAAACATTCATGTTTCTTTT ATCCATTAATAAAACCATTTCCTGTTCATTTCAATGAAATTATCCTGTTTAGATTATGAGTTACAGAATGAAAATTCCTG ACCATATTGGCAGCTATCATGCAAATGGTCTGGTGGTGGAGATGCACATGCATCAACCATGGTGTTGCTGACTTACATGT CTAACTACGCATGGCATGCAAAAGTGGTGTTAACCTTAGCAGCCTTTGCTGTTATCTCTGGGGAGTTTTGGCTTGTTGCC AATATGAGTGCTGCAAATACACTTGCTAAGTCTGTGGCCCTCCTCAAGCAACTCCCTGACATGGTAGAGAATTCTGCATC TCTGAGACCCCAGTTCGATGCGCTCAATAAGCTCGTGAAGGCAGCGCTGGATGTAACCTATTGCATCATTGAGTTCAAGG AGCTACCATCTGAGTACATTTCAGAGGACATGCCTCCTATGTCTGTTGCAAGTGCTCATATTCCTATTGCTGCCTATTGG GTCATTAGGAGTATTGTGGCTTGTGCCTCACAAATTGCACTTCTCATAGGCAGTAGACATGAGTAAGCATAGCTCATTCA CTATCAATCACTTGAACCAACTTAGAGCATGTTTGCAAATCATTCTACGATTGATTCTAAAGCCAAAGTCAATTATGGGA ATAAGCTTCGCGAGTGGCTTCTTGATGTCAGAATTGATTATGCGGAAAATAGGCTGATACAAACATGCTATTAATAACTT GCTATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTAAATAATAGTGACCC TTGTTTTAACTATTGCAGGGCCATTTCGTCAGCCACAGAGGCATGGGAATTGTCTAGTCTGGCTCACAAAGTCACAAGTA TACATGAGCACCTCAAGAATCAATTGGAACTTTGCTACCAATATATAGGTGAGCACGTCATTGAAAATATAATTAGAAAC TTAATTAATTTGGATATATGTTAACGAATTCATTCAAGATTCTGGACTTAGTATGAAATCAAAACGTTGTACCAAAACTT ACTTGTAGCATGTTCGGATTAATTTATTTTCAATCGGAATCAATTTTTGCACTCAAAAGCTACTCACAATAGGCAGTAGC TTCTCCAAAAAATTGATTTTGGCTGCAGAATCATGTCTAGGAGGGTTTCCAAACATAAATTTGGATATATGTTACCTGAG CTCAAGATTCTGCTTGCAGCATTTTATGCTTAATGAGAAATTCAAACCTTGTAGCGGAACTTATTTATGGATTTTGTCTC TGTTGAGGGTTTCTAAAGACAAGGATAAAATTTTATATATAAAGCAGCAAAATTTGACACTTGCATCCTTACCCATGCAG ATGACAAGAGGCATGTAGAGGCCTTTCATAATCTGATTCGCCTTTTCGAGACAAGCCATGTAGACAACATGAAAATCCTC AGAGCACTGATATATCCAAAGGATGATATTCCTCCACTTATAGATGGAACTACAAAATCAAAGGTCTGTAATTGTATTCA ATTCTATTAACATGTAATTAATCCTTTGAAAATATATTTTGTAACATTGACTTATTGACAAGCAGGTTAGTCTTGAGGTA CTAAGGAGGAAGCATGTGTTGCTGCTGATATCAGATCTTGATCTTGCACAAGAAGAGATCATGGTACTTGACAATTTGTA CAAAGATGCGCGATCGAGGGGTGAGATGCACTACGAGATGGTGTGGATCCCAGTTGTGGACAAAGCAACCTGGAATGATG TTAACAAGCAGAAATTTGAGTATTTGCAGTCACTGATGGCCTGGCACAGTGTTCGTGATCCTTTCATCATCGAACCATCA GTGATAAGGTACAACAAAGAAGTGTGGAATTTCACAAAGAGAGCTATTGTGGTGGCCCTTGATCCACAAGGCAGATTATC CTCCCCAAATGCTCTCCACATGATATGGATCTGGGGCAATTTGGCCTTCCCATTTACACGTGAGAAAGAAGAATCCTTGT GGAAGCAAGAGATTTGGAGCCTTGAGCTACTTGTTGATGGCATTGATCCTATGGTTTTGGAATGGGTAACAATATTAACT TCAATTCTACAATTAAATTTATATATAAGAATCACCTATATCTAATCTAATAGAGTGCGAGCCTCGGCGCAAACATAAGG TTAAGGTTGTTGCCTTGTGACTTTGCGGTCATAGGCTCGAACTGTGAAATCAGCCTAGTGCAAAATGCAATGTAAGGTTT CTTACATTGGATCCACAAAATGTATTTGGCCCTCAGTGAACTTCGTGCATAGCGAGAGCTTTATAACACCAGGTTTACCT ATATTCCAAATTTCATATAAGGTTTGGTTGCTTCAAGTGGTACATGTTTGATTCTCCTTAAACAAGGTCTCAGGTTTGAG ACCTGTGAATGGAAAAACCTTCGCTGAATATATAATATCCTAATTACAAATCAGATATATCAACTGATCTCAGTAAACAT ATAGTTTCTCTTATATCCAAATTCTGTTATGTATTGACACTATAATTAATGTTAATTTTGCCTTTGTTGCAGATGGCAGA AGAAAAAATTGTGTGCCTATATGGAGGTGAAGATCTTGAGTGGATTGAAACATTCACAGCCACTGCAATGAATGTTGCAA GAGCTGGCAAATTCGATCTGGAGATGGTTTATGTTGGAAAAAGCAATGCTAAAGAAAGGATGCAGAGAATGATCAGCACC TTTGCCAACAGAAAGTTCAGTTACTTTTGGCCTAATGTCACATCCATTTGGTTCTTCTGGGCAAGGTTGGAGAGCATGTT GTATTCCAAGTTGCAGCATGGAAGCACAGTTGAGAATGATCCAATCATGAGCGAGGTCATGACCGTGCTTAGCTTCGATG GAAGCGACCGAGGGTGGGCGATTTTCTGTAGAGGGGCATCTGAAATGGCTAGAGCTAAAGGTGACACTGCTCTAACAAGT TTGAGAGATTTTGATAAGTGGAAGCATAAGATTGAGCAAGATGGTTTGGTGCCTGCACTGAATGATTATCTGCACCAAAT TCATACACCAGATCATTGCAATCGTCTCATTCTTCCTGGGAGCACTGGGGGGATACCAGAAAAGGTAGTTTGTGCTGAGT GTGGTCGTCAAATGGAGAAGTACTTCATGTACCGCTGCTGTGTGGAGTGAAAGAACTGTGCAGGATTTTAAGTTCGCGTT GCGGACTGCAATTTAAAACCCTGGAAGTGTCATGTTTCACAATATCCAATCTTCCATTATCATTGCTTCATTTATATTTG TGTATGATATTGGTTTGAGTCAGTTATTTATGTTTTGTAGCATCATAAGTTCCATCTTTGTGAGATGCATAGTGACATTT AATTATATGAGGGTAATCTTTGTCTAGTTGCTAGTAGTATATCAGATCTCAGTTGCTCCATTTGTTTGGGCAACTGAGTC ACTTGCTAATAAAGTGTGTTGTAGACCATTGTTATTACTTATTAGTATTACAATAATGTTGTCGTGACATGTGATGTAAA CAATTCCATTAACTTCATTTTTCTTTAACTAAATGTAAGACCCAAGTTTTTAAGCTTATGCTAAGTAAATAAAATCTTAT TCACGAT
CDS sequence (LotjaGi1g1v0229400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCAATCCTCACTCGCATGCCCCTAGGAAGATGCAACAGAGAAAGGAACGACGCATGTTCTCCGCTTCTGATGA CAGTGCCATGATGAAACAAGTGCAGGGAACTCATGCCCCTGATGGTCGTGAAATTGATGTTAAACACATTATTCAAATAG TGGATGAAATCTTGATTCAAGTCATTGCTCGCGGTGTTGAGGGTCATGATGTAAAGAGAGAGCAAGAAACATTGGAGATT TCTGCTGCTTTGGCTGAATTTGACATGCTAGATTCTCTGGCTATTGTCATAAACAAAATTTCTTGCGAGCTATCATGCAA ATGGTCTGGTGGTGGAGATGCACATGCATCAACCATGGTGTTGCTGACTTACATGTCTAACTACGCATGGCATGCAAAAG TGGTGTTAACCTTAGCAGCCTTTGCTGTTATCTCTGGGGAGTTTTGGCTTGTTGCCAATATGAGTGCTGCAAATACACTT GCTAAGTCTGTGGCCCTCCTCAAGCAACTCCCTGACATGGTAGAGAATTCTGCATCTCTGAGACCCCAGTTCGATGCGCT CAATAAGCTCGTGAAGGCAGCGCTGGATGTAACCTATTGCATCATTGAGTTCAAGGAGCTACCATCTGAGTACATTTCAG AGGACATGCCTCCTATGTCTGTTGCAAGTGCTCATATTCCTATTGCTGCCTATTGGGTCATTAGGAGTATTGTGGCTTGT GCCTCACAAATTGCACTTCTCATAGGCAGTAGACATGAGGCCATTTCGTCAGCCACAGAGGCATGGGAATTGTCTAGTCT GGCTCACAAAGTCACAAGTATACATGAGCACCTCAAGAATCAATTGGAACTTTGCTACCAATATATAGATGACAAGAGGC ATGTAGAGGCCTTTCATAATCTGATTCGCCTTTTCGAGACAAGCCATGTAGACAACATGAAAATCCTCAGAGCACTGATA TATCCAAAGGATGATATTCCTCCACTTATAGATGGAACTACAAAATCAAAGGTTAGTCTTGAGGTACTAAGGAGGAAGCA TGTGTTGCTGCTGATATCAGATCTTGATCTTGCACAAGAAGAGATCATGGTACTTGACAATTTGTACAAAGATGCGCGAT CGAGGGGTGAGATGCACTACGAGATGGTGTGGATCCCAGTTGTGGACAAAGCAACCTGGAATGATGTTAACAAGCAGAAA TTTGAGTATTTGCAGTCACTGATGGCCTGGCACAGTGTTCGTGATCCTTTCATCATCGAACCATCAGTGATAAGGTACAA CAAAGAAGTGTGGAATTTCACAAAGAGAGCTATTGTGGTGGCCCTTGATCCACAAGGCAGATTATCCTCCCCAAATGCTC TCCACATGATATGGATCTGGGGCAATTTGGCCTTCCCATTTACACGTGAGAAAGAAGAATCCTTGTGGAAGCAAGAGATT TGGAGCCTTGAGCTACTTGTTGATGGCATTGATCCTATGGTTTTGGAATGGATGGCAGAAGAAAAAATTGTGTGCCTATA TGGAGGTGAAGATCTTGAGTGGATTGAAACATTCACAGCCACTGCAATGAATGTTGCAAGAGCTGGCAAATTCGATCTGG AGATGGTTTATGTTGGAAAAAGCAATGCTAAAGAAAGGATGCAGAGAATGATCAGCACCTTTGCCAACAGAAAGTTCAGT TACTTTTGGCCTAATGTCACATCCATTTGGTTCTTCTGGGCAAGGTTGGAGAGCATGTTGTATTCCAAGTTGCAGCATGG AAGCACAGTTGAGAATGATCCAATCATGAGCGAGGTCATGACCGTGCTTAGCTTCGATGGAAGCGACCGAGGGTGGGCGA TTTTCTGTAGAGGGGCATCTGAAATGGCTAGAGCTAAAGGTGACACTGCTCTAACAAGTTTGAGAGATTTTGATAAGTGG AAGCATAAGATTGAGCAAGATGGTTTGGTGCCTGCACTGAATGATTATCTGCACCAAATTCATACACCAGATCATTGCAA TCGTCTCATTCTTCCTGGGAGCACTGGGGGGATACCAGAAAAGGTAGTTTGTGCTGAGTGTGGTCGTCAAATGGAGAAGT ACTTCATGTACCGCTGCTGTGTGGAGTGA
Protein sequence (LotjaGi1g1v0229400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNPHSHAPRKMQQRKERRMFSASDDSAMMKQVQGTHAPDGREIDVKHIIQIVDEILIQVIARGVEGHDVKREQETLEI SAALAEFDMLDSLAIVINKISCELSCKWSGGGDAHASTMVLLTYMSNYAWHAKVVLTLAAFAVISGEFWLVANMSAANTL AKSVALLKQLPDMVENSASLRPQFDALNKLVKAALDVTYCIIEFKELPSEYISEDMPPMSVASAHIPIAAYWVIRSIVAC ASQIALLIGSRHEAISSATEAWELSSLAHKVTSIHEHLKNQLELCYQYIDDKRHVEAFHNLIRLFETSHVDNMKILRALI YPKDDIPPLIDGTTKSKVSLEVLRRKHVLLLISDLDLAQEEIMVLDNLYKDARSRGEMHYEMVWIPVVDKATWNDVNKQK FEYLQSLMAWHSVRDPFIIEPSVIRYNKEVWNFTKRAIVVALDPQGRLSSPNALHMIWIWGNLAFPFTREKEESLWKQEI WSLELLVDGIDPMVLEWMAEEKIVCLYGGEDLEWIETFTATAMNVARAGKFDLEMVYVGKSNAKERMQRMISTFANRKFS YFWPNVTSIWFFWARLESMLYSKLQHGSTVENDPIMSEVMTVLSFDGSDRGWAIFCRGASEMARAKGDTALTSLRDFDKW KHKIEQDGLVPALNDYLHQIHTPDHCNRLILPGSTGGIPEKVVCAECGRQMEKYFMYRCCVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 702 | 702 | 0.0 | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 702 | 702 | 0.0 | ||
| Pfam | 25 | 309 | 285 | 1.1E-115 | ||
| Coils | 355 | 375 | 21 | - | – | |
| Pfam | 471 | 700 | 230 | 2.1E-104 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phloem development | The formation of the principal food-conducting tissue of a vascular plant. |
Expression pattern of LotjaGi1g1v0229400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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