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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027942
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.385s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0128499.1
n.a. sieve element-occluding protein 3 [Medicago truncatula] gi|201067563|gb|ACH92804.1| chr0 58040876 58045327 -
2 domain predictions
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Lj0g3v0128499.2
n.a. sieve element-occluding protein 3 [Medicago truncatula] gi|201067563|gb|ACH92804.1| chr0 58040876 58045327 -
2 domain predictions
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Lj0g3v0128619.1
n.a. Sieve element-occluding protein [Medicago truncatula] gi|357440971|ref|XP_003590763.1| chr0 58107067 58111555 -
2 domain predictions
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Lj0g3v0256639.1
n.a. sieve element occlusion a [Solanum phureja] gi|307101690|gb|ADN32810.1| chr0 133239187 133244134 +
2 domain predictions
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Lj0g3v0285959.1
n.a. Sieve element-occluding protein [Medicago truncatula] gi|357441005|ref|XP_003590780.1| chr0 148494694 148499691 +
2 domain predictions
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Lj0g3v0285979.2
n.a. Sieve element-occluding protein [Medicago truncatula] gi|357441007|ref|XP_003590781.1| chr0 148502369 148506807 +
2 domain predictions
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Lj0g3v0303369.2
n.a. sieve element-occluding protein 3 [Medicago truncatula] gi|201067563|gb|ACH92804.1| chr0 157885624 157891697 +
2 domain predictions
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Lj0g3v0303369.3
n.a. sieve element-occluding protein 3 [Medicago truncatula] gi|201067563|gb|ACH92804.1| chr0 157885624 157889601 +
2 domain predictions
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Lj1g3v3700450.1
n.a. Uncharacterized protein TCM_017020 [Theobroma cacao] gi|508710694|gb|EOY02591.1| chr1 42604389 42608964 +
2 domain predictions
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Lj1g3v3700450.2
n.a. Uncharacterized protein TCM_017020 [Theobroma cacao] gi|508710694|gb|EOY02591.1| chr1 42604389 42608964 +
2 domain predictions
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Lj4g3v2717170.1
n.a. Uncharacterized protein TCM_017019 [Theobroma cacao] gi|508710693|gb|EOY02590.1| chr4 36611485 36617037 -
2 domain predictions
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Lj5g3v1171170.1
n.a. Sieve element-occluding protein [Medicago truncatula] gi|357440965|ref|XP_003590760.1| chr5 18707739 18714923 -
2 domain predictions
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LotjaGi1g1v0229400.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A0A072UZM7|A0A072UZM7_MEDTR Sieve element occlusion protein; Found in the gene: LotjaGi1g1v0229400 LjG1.1_chr1 53278623 53283669 +
2 domain predictions
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LotjaGi1g1v0614900.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKI5|E2FKI5_SOYBN Sieve element occlusion m; Found in the gene: LotjaGi1g1v0614900 LjG1.1_chr1 116051213 116056213 +
2 domain predictions
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LotjaGi4g1v0392000.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A0A072TU76|A0A072TU76_MEDTR Sieve element occlusion protein; Found in the gene: LotjaGi4g1v0392000 LjG1.1_chr4 77058584 77064313 -
2 domain predictions
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LotjaGi5g1v0185500.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A0A151T179|A0A151T179_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0185500 LjG1.1_chr5 47213697 47220482 -
2 domain predictions
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LotjaGi5g1v0185600.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKJ5|E2FKJ5_MEDTR Sieve element occlusion b; Found in the gene: LotjaGi5g1v0185600 LjG1.1_chr5 47250505 47255391 +
2 domain predictions
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LotjaGi5g1v0186000.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A0A023ULC2|A0A023ULC2_LOTJA Sieve element occlusion by forisomes 1; Found in the gene: LotjaGi5g1v0186000 LjG1.1_chr5 47281310 47285661 +
2 domain predictions
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LotjaGi5g1v0186100.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKJ1|E2FKJ1_MEDTR Sieve element occlusion by forisomes 2; Found in the gene: LotjaGi5g1v0186100 LjG1.1_chr5 47288717 47294108 +
2 domain predictions
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LotjaGi5g1v0186200.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A8C978|A8C978_MEDTR Sieve element occlusion by forisomes 1; Found in the gene: LotjaGi5g1v0186200 LjG1.1_chr5 47296574 47301300 +
2 domain predictions
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LotjaGi6g1v0000300.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKJ2|E2FKJ2_MEDTR Sieve element occlusion by forisomes 3; Found in the gene: LotjaGi6g1v0000300 LjG1.1_chr6 124613 128829 +
2 domain predictions
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LotjaGi6g1v0190400.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKI7|E2FKI7_SOYBN Sieve element occlusion p; Found in the gene: LotjaGi6g1v0190400 LjG1.1_chr6 48632666 48640222 +
2 domain predictions
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LotjaGi6g1v0190400.2
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKI3|E2FKI3_SOYBN Sieve element occlusion j; Found in the gene: LotjaGi6g1v0190400 LjG1.1_chr6 48634411 48644664 +
2 domain predictions
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LotjaGi6g1v0190600.1
n.a. Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKI4|E2FKI4_SOYBN Sieve element occlusion l; Found in the gene: LotjaGi6g1v0190600 LjG1.1_chr6 48660330 48665008 +
2 domain predictions
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