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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0233900 |
| Transcript ID | LotjaGi1g1v0233900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3S957|I3S957_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0233900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:55011338..55014124) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGAACACAATCAAGGACCAAAATGGCTATTTACTCAACTACAAACTTGACACAAACATCTAACCCTAGCCACACACT TTCATTCGAAAAGTTTTACCCCTTTCTGGCCAGATGAGAAAACCGCTTCTAGCTCTCTGTTGATTCCAGACCCAATTCGC AGGAGGGAGTTGGAGCACCTACGTTCCCAGGTAAACCCTACAAAAGGGACTGTTTTTTCATTTCTGCACCTCCGCTGTAG CAGTTACGTTCTTCCTTGTTCATTTGCAATAGTACCATTCTTATTTAATTTACTTTTCCTTCTAACAATTGCGTTCTCCC GTGAAAATCTAACCCTTTTGTCAATTTAATACATTTCTGGGAAAGAATGTGATTGTTGCTGTTACTAATCTTTAATAATT GAATGAATTTTCAGAACATAAAGTCTATAACGTGTACATAATCATATTCATGTGATAGGATGAGATTTTAATTTTTACAA CGTACAAGTCACTTTAGTACCTTGATCTGAACCAAAAGTTAACCAAGTTGACTAGATAAAAAATAGTTCTACACTTAAAA CCAAAAATAGGAATGAAAAAGTTACAATTTATTCGGTTCCGTCCATTATCTGACTCGAATATTACTCTGTTCCGTCCTAG ATTAAGGGTCATGGCCACTACTTCCCGCCAGGCTAGAAGAGAAATGGACAGGATTAGTAGTTTACCAGATGAACCCCTCT GTCACATTCTCTCTTTTCTCCAAACACAAGAAGCTGCTGCCACAAGTGTTCTTTCAAAGAGGTGGAGGCACCTATGGACC TCAGTCCCCACTCTCGACTTTGACTTTGACGAGAAAATCTATAGCAATATGGGCAGACCCTCCTATTGCTTTGAAAAGTT CATATACGCAACCATTCTCGCCAGAGATGCGCGACAACCCATCCGAAGCTTTCGTCTCAAATATGAGGCTGAAACTTACT GTCGGAATGCAGATGTCAATGTTTGGGTAAACACCGTTTTACAACGTGGTATTGAGAACCTTCACCTCTGGATGTCCAAG TTTTGTCGTAGAAATAATGTTTTGAGAATTGTCAGCTGCAAAACCCTTGTTGTTCTCAAGTTGAGAGGGTTACGTGTGTA TGCTTCTTCTCCAGTTGAACTTCCCTCACTCAAATCCCTACATTTGGAACATGTTGAATTTCGAAAACGTCAATCTATTT TGGAGCTTGTTCGTGGGTGTCCAATTATTGAGGATTTGAAAGCTCGTACTATACATTATGTTGGTTTTATAAATTATGCT GATCGTGATCCTTCTGTTGATGCCTTTTTTTGTGATGGAGCTGTTAAAATCTTACCCAAGTTGGTCAGGGCAGATTTATC ACCGTTCTGTGTGGATGTTCCTCTGAAAGCCATATGTAATGTGGAGTTTTTGACTTTGAACACCAACCAGGTTTGGATAT GTTGGAAAGGAAATTGTGTTTAATTTGTTATTTGGTTTCATTTTAATATCACCTATATTTCTCATAATTTGTGTTTATAA CTATTGCAGTATCCTAATCCTTTGGATGATGTGGTTCCTAAATTTCCTAATTTAATACATGTGGTGCTCCAAGTTGATTT ATTTGTAAACTGGCCTTTGGTGCTTGCGATGCTCAAAAATTGCCCGAAGCTTCAAGTTTTTGAACTTGATTGCGAAGGTC AACCTGAAGATGAGTCTTTTTTGCCTGACCCTCATTTTGTTCCTGAATGCCTTACTTCACAGTTTAGAAAGTGCTCTCTT GAATATTACTATGGTACAGAAAGTGAGCTGAGATTTGCAAAATATATCATGCAGAATTCCACAACTTTACGGACCATGAC AATTTGCTCTAAGCCTTCCTTAAGTCCACAGGCAAAACTTAAAATGCTTAAACAATTAGCATTATGCCCAAAGAGATGTG AACTTTCATTTGAATGATAAATGTTAGGTTTATTTATAGCTAGTTAGCTACAAATGATTCTTAGATGACTGCATATGCTA TTTTTTAATGTAATGCAACGAGGTAGTACTTGGATTTTGTGTAATTTTATCTTGTCGCGTACTTATCTGCTTATTGTTTG CTAAATCCAGTTCTGATACATGACCAGAGATGAGTGTATAAATGTTACTATTTTGTATGTTGCTGAAGTATTGCTCTCTC TCTCTCTCTCACGATGAATTTTCTTTTTTATTTTGATAGCATCAAGGATGTTATTGTGATGATTTTGTGTCCCCTAAATT TGACCAAGGATCTTAATGTGTCATTGATGCTTCTGCAAGGGTATCTTACAACATGGTTTGCCCCTTACTAAAGTAGTATG ATATAAGAGCCTGCTCATGCTTTTAACTAGTAAGTTGTCCAGTCCATAGTAGTCAATAGCGGCAAATAGCGGCGCTATAG CGGCGTAGCGGAGCGGAGCGGCTCCCTGCCGCTATTGAGATGAAATAGCGGCCAACTTCACAATAGCGGTCGTAGCGGCG CGAATAGCGGCCAAAATAGCGGCAGATCGCGGCCAATAGCGAGAAATAGCGGCGCTATATGAACGAAGGAGAAAATGACT CAAGCCCCTTCGTTTTAAATTGTTGGGGAACCTTTTTATGGGCATGTTAGGACTTCTCAGGGCCATTATAGGTCAAAATT GATAGAATTAAGCTTCATTCTTCATTCAGATTTGCAAATTCGACTTCTTTACCTTGCTTTTGAGAAGTTATTAGTTGTGT GTTATTGTTCAAGACTCATGATTTTTATTTCTATTATGAATGTTATGAATTTTAGGCAATATTTGAC
CDS sequence (LotjaGi1g1v0233900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTACTTCCCGCCAGGCTAGAAGAGAAATGGACAGGATTAGTAGTTTACCAGATGAACCCCTCTGTCACATTCT CTCTTTTCTCCAAACACAAGAAGCTGCTGCCACAAGTGTTCTTTCAAAGAGGTGGAGGCACCTATGGACCTCAGTCCCCA CTCTCGACTTTGACTTTGACGAGAAAATCTATAGCAATATGGGCAGACCCTCCTATTGCTTTGAAAAGTTCATATACGCA ACCATTCTCGCCAGAGATGCGCGACAACCCATCCGAAGCTTTCGTCTCAAATATGAGGCTGAAACTTACTGTCGGAATGC AGATGTCAATGTTTGGGTAAACACCGTTTTACAACGTGGTATTGAGAACCTTCACCTCTGGATGTCCAAGTTTTGTCGTA GAAATAATGTTTTGAGAATTGTCAGCTGCAAAACCCTTGTTGTTCTCAAGTTGAGAGGGTTACGTGTGTATGCTTCTTCT CCAGTTGAACTTCCCTCACTCAAATCCCTACATTTGGAACATGTTGAATTTCGAAAACGTCAATCTATTTTGGAGCTTGT TCGTGGGTGTCCAATTATTGAGGATTTGAAAGCTCGTACTATACATTATGTTGGTTTTATAAATTATGCTGATCGTGATC CTTCTGTTGATGCCTTTTTTTGTGATGGAGCTGTTAAAATCTTACCCAAGTTGGTCAGGGCAGATTTATCACCGTTCTGT GTGGATGTTCCTCTGAAAGCCATATGTAATGTGGAGTTTTTGACTTTGAACACCAACCAGTATCCTAATCCTTTGGATGA TGTGGTTCCTAAATTTCCTAATTTAATACATGTGGTGCTCCAAGTTGATTTATTTGTAAACTGGCCTTTGGTGCTTGCGA TGCTCAAAAATTGCCCGAAGCTTCAAGTTTTTGAACTTGATTGCGAAGGTCAACCTGAAGATGAGTCTTTTTTGCCTGAC CCTCATTTTGTTCCTGAATGCCTTACTTCACAGTTTAGAAAGTGCTCTCTTGAATATTACTATGGTACAGAAAGTGAGCT GAGATTTGCAAAATATATCATGCAGAATTCCACAACTTTACGGACCATGACAATTTGCTCTAAGCCTTCCTTAAGTCCAC AGGCAAAACTTAAAATGCTTAAACAATTAGCATTATGCCCAAAGAGATGTGAACTTTCATTTGAATGA
Protein sequence (LotjaGi1g1v0233900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTSRQARREMDRISSLPDEPLCHILSFLQTQEAAATSVLSKRWRHLWTSVPTLDFDFDEKIYSNMGRPSYCFEKFIYA TILARDARQPIRSFRLKYEAETYCRNADVNVWVNTVLQRGIENLHLWMSKFCRRNNVLRIVSCKTLVVLKLRGLRVYASS PVELPSLKSLHLEHVEFRKRQSILELVRGCPIIEDLKARTIHYVGFINYADRDPSVDAFFCDGAVKILPKLVRADLSPFC VDVPLKAICNVEFLTLNTNQYPNPLDDVVPKFPNLIHVVLQVDLFVNWPLVLAMLKNCPKLQVFELDCEGQPEDESFLPD PHFVPECLTSQFRKCSLEYYYGTESELRFAKYIMQNSTTLRTMTICSKPSLSPQAKLKMLKQLALCPKRCELSFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 210 | 200 | 2.4E-20 | ||
| PANTHER | 12 | 390 | 379 | 9.8E-89 | – | |
| SUPERFAMILY | 12 | 82 | 71 | 5.89E-15 | ||
| ProSiteProfiles | 12 | 67 | 56 | 9.63 | ||
| PANTHER | 12 | 390 | 379 | 9.8E-89 | – | |
| Pfam | 14 | 52 | 39 | 1.1E-7 | ||
| SUPERFAMILY | 120 | 307 | 188 | 2.86E-10 | – | |
| Pfam | 166 | 191 | 26 | 0.0011 | ||
| Pfam | 321 | 365 | 45 | 2.4E-12 | ||
| SMART | 326 | 395 | 70 | 3.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0233900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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