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LotjaGi1g1v0234300.2

Overview

Field Value
Gene ID LotjaGi1g1v0234300
Transcript ID LotjaGi1g1v0234300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0234300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:55091186..55096789) extracted from Lotus japonicus Gifu genome v1.2.

AAGCTTTTGGAGACCCTTCCTCGTTTCACCTTCACCTTTTCTATTGACAAACCCTATTCATTTACCATTCATCACCATCA GTCCCCACTTTCCGCACGACCCAAACCACCGTCACCATCTTATCGCCGCCGTGCTTCCGCTTATGTTAATTTGAAGTCCG GCGAACATGGTTGACAGAATTAGCATGTTATCAGATGAAGTCCTCTGTCACATTCTCTCCTTTCTCTCAACTGAACAAGC TGTTGCCACAAGTGTTCTCTCAAAGAGATGGAAGCACCTCTGGATCTCAGTATCCGTTCTCGACTACGACGACGAAATCT ATCTCAGAAACAACAGACCCCATTCTTGCTTTGAAAGGTTCGTATACGCAACCATTCTACCCAGAGATGCTCAACAACCC ATCACAAGGTTGCGTCTTATATACGGGCGTTATGGTTCTGAACTTTCCGATACCGATGTCAGTCATGGCCGTTCGAATGC TGATATCATTGTTTGGGTAAAAACGGTTATACGACGCGGAATTCAGAACCTTGACATCCAGATACATCCTCAAAATTATA CTATTAGTTTGAGCAGCTGCATTTTCAGTTGCCAAACCCTTGTTGTTCTCAAGTTGTCAGGGTTATCTCTCAATGTGTCT TCTTCAGTTGAGCTTCCCTCACTCAAATCCCTACATTTGGATCTTGTTAAATTTGTGGATCCTAATTATCTTATGGAGCT TCTTTATGGCTGTCCAATGCTTGAGGATTTGAAGGCAGAATGGATACATTATGCTGTTGAGGAGTATGATGTTAAGGAAG AGTTTAAATACTTACCCAAGTTGGTCAGGGTACATCTACGTTTTATTTCTATGTATGATATTGAAATTCTTCTGAAAGCA ATATGTAATGTGGAGTTTTTGAGTATCAAACAGGTCCGATGTGAAAATGTGTTTAGTTTGATGTTTTTTGGTCTCGTTTT TACATTATATCACCTATATTTCTCATAATCTGCCTTTTTATAACTGTTGCAGTTGCGGGATGTTGATGAGGTTCCTGAAT TTTCTCATTTAAGATATTTGTCCCTCTCCTTGGATATTCATAGCTGGCATTCGGTGCTTTTGATGCTCAAGAGTTGCCCC AACCTTCAGAGTTTTAAACTTAATTTGCGTCGATCTTTTGAGGCTGTGGATGTTCTACCTTACACTCACTTTGTTGTTCC TGAATGCCTTACATCACACCTTAAGAAGTGCTATCTCAAATATTACCGAGGCACAGAATGTGACCTACGATTTGCAAAAT ATATTATGCAGAGTTCAACATCTTTACAGTCCATGAAAGTTCTTAGTGTTTCACCTAATTCATTTGAAGCGCTAAAGGAC TTAGCTTTGTTCCCAAGGAAATCCACATCATGTGAACTTTCTTTTAATTTATATGGTTTTCAGTAGCTGTAAACTCTTCC TAGCTGAAAGCATGTGACATTTGTTAATATAATGGAAACACGGGATTTGTAGGACATGAACTGTGTAATTGTGTATTGTG TCTCTTTGTGTACTCATCACTGGTTCTTGTCTAATGTGCTTGACTACCTGATGTGAGGGTGTAAATGGAAATCACTATTT CTTATGCCGGTGATTCATTGTTTTCACTCTTCCAAAAGGATGTTTTTTCTTCTTTCTTATGATAGTATTCTGACATACTT CTTGGTTAGTAGCCAATCATGTTATAAGATACCTGCATGATTATTTGACTTTATAACTATTGCAGTTGTCCCTCTCCTTG GATATTCATAGCTGGCATTTAGTGTTTTTGATGCTCAAGAATTGCCCCAAGCTTTAGAGTTTTAAACATGATTTGCATCT ATCTTTTGAGGCCGGGATATTCTACCTTACCCTCATTTTGTTGTTCCTGAATGCCTTACATCACACTTGAAGATTTGCTA TCTCAAATATTACCGAGGCACAAAAAGTGATCTACAATTTGCATCTTTAGATTCCATTAAAATTCGTAGTTTTCACCTAA TCCACTTGAAGTGATAAAGGAGTTAGCTTTGTGCTCAAGGAAATTTGTATCATGTGAACTTTCATTTAGTTAGATGCAAA CTAAAAGATTAGAAAGCTGAAGATATATGAAAATTTGTAAGAAATTATGGCTTCCTTTATTATGAATTATGATATTTGTG TTATCTTGTTATTGACTTTGCGTTTTGTATAATTTGATTACTAGGTACCAAACTGAGTGTATGTATAATCTTGTGTTGGT TCTGGTTTTCCCTGCTTCCAGCTGATCTTGCTTTACTGTTATCACTGCTTCTGGCAGCTTTTAAGGCCTCCCAATCATCA TCAACCCCATCAAGCAAAGGTTGCTCAACTTCAGATGTTAATTTCTGTTTCTTTTCTATCCCATCGTTGAGAGTATCTAC TTCATCTGCTGTATTTAAATCCATTTCCTCTTTTCCCTATATGGAGCTTCCATCGGCAGTCCCAGTGTCCCAAGTTCAGC ATCTAATTTCTGTCTTTTTTACACTTAGTGTTGGCTACGGAGCCAAAATTTGAGTCGATTTCGGTATCGACGCTAATTTT AAATCAAGCTTTTTTGTAGTGTTTGATGAGAAGGGGGTGGCGGATTATTAACCTGATTCTGATTTAGAGAGTTCTTTATT TAGAGAGTTTTTGTAATGTGCATGCTGGGTGTTATTATCGGTGGTGCTTATTTGTTATTTTCTTTGTTGAATTCGACTTT TGTAGATGGTGTTGTGCCAAGGGCTAAGATGAACCAAGCACTATCTCAATGATGAAATAGGCCCTTGTTGCAGGCTGTAC CATGCTTTTACTAAAGATAGAGCCTATACTATCATTCTTGTCTTAATGGGAAGCACATATCAGAAATAACTGAATTTATG TGTCCTGGCATCAAACTGACATTGCAATCCACATTTATTTTGTCATTAGGGAAACTGAGTTTATTCCATCAAAATCACTC TTGATTATGCCATGTGCATGTTTATTGTGCTTATGAATAACTCCAGTAAAGTAAATTATTCCATTTTTTATATATTCTTC CAATCGCTCTTCCTTCCCTTTCTTTTTAATGCTTAGTTTTTTTTCAGGGTTGGGTTCAATGACATGGTGTGTGTACTCTA ACATTCTGCACTTTTCTGGGATAGAGTTGGAGGAGTGCTTTGGTTGACTCTTGCAGGTGTTACAACGTTCTTTTCAGATA ACCTTCTATAGTGGTCTTACAACATATATATATATATATATATATATATATATATATATGTTTTAGGTGAATATCCAGCC ACTTTGTTTTCCTGCTGTGAATTATAAGAACAATAGTCACGTTTTTAACAGGATTATCATTATTTTCGAGCACAAAATCA TCACACTCTACTTTTTCAATGTCTGAATTTTCATATGTATTTCCTTAATTCATTACCATTTTGTGTAATGAAATGAAAAG CATTCATTCTCAATTCAAATTATGCTATTAAGTATTAAGGTTCCAAAAGTTGAAAGTGTCACGTTTTCCTTTTCAAAAGA AGAGAACTTCTATCTTTGAACAAAAGCAATGTCTTTTGAAAAGAGAAAATCTTCAAGTGCTTCATTATTTGTTAGAAATG AATAGTTAGAGAGGACCTGTACGGCTGTACTGCATACAAACACAAGCTAGCACTTATTAGTCACCTACAGAATTTTTTTT AATTTTTGGTGCTTTCAGTGGATAAACACTAGCACATAAAAGTTTTATCAGTTAGTGTTTGTTGTCCATTAATTAGTTGG TATTAAAGTGCGTGATTGTATTTATGAGGTTATGGCTTTCCTTTGTGTGTGTGTACTCATCACATTATTATTAGACATCA AAATATGATTTTTTCCCTTTCTTTTCCCTTAATTTAGTTTCTTTTTATGATTCTCTTTCTTATGTTAGTTCTGCTTGGTA CTCATAATGTTTTTTTCTTTTCTTTTCAATGCAGTGGTAGTGATGATCAGCTTTGAACATTCTGCCATTGTGTGGTCAAT GTAGGGAATGCCATTTAGGGTGGAAAGACTTGGTTATTGTTGTTGTTCAAGACTCTGAGTGATTGTTGTTCATGGTGTTA TAGGAGAGTGATGATATTCTGCTGTCTATGTGTGCTTTTGTAGTTTTCAACTTATCCTTTTATAGTTGCACTTTAGGTTA AGATATATTGTAGGCTTGGCTTAATCGCACTTTTGGTCCCCCACGAATGCTATATGTGTCATCGGGGTCCCTAAAGTTCA AAAATCCCATTAGGCATCCCCAATGTTAACCTTTGTTAACAACTTTGGTCCCTCCTCTCTTTTCCATCCAAAAACTAACG ATTTTGGGGACCAAAAGTGCAAATGAACCAAAAAACAAATAAAAAAATAAAAAATTAAAATCCAGAAAACACTTTTAATC TTCCTCTTCCTCCTTTATCATCTTCATCATCTTCAAACCCAGATGTGAGATTGACACAAAACATATTCTCTCATAGTCAT ACCTCCCTTCACCCACCACTCATCCATTTCCTTCCTCACCCACCATCACATAAAACCCACATAATGAAGAACAAACCCAA GAAACACACATGGAAGAAGAAATTGGAAAACATGGGTATTGATTGAAAAGTTTTGATTTTTCTTCCAGCAGAGGCATAAA GCCAAAGATGCAGAACGAAGAAATTGGAAAAGAATGAGTATTGATTGATTGGACCGTTTCCTATACCAGAACCAAAGATG CAGACCAAAGAAAATTGGAAAAAAATGGGTATCAGTTTATCTAATGGGTATTGATTTTTCTTCCTATGATTGGACCGATC TGTTACATTTCATGTCATGAATTACAAGTTGCATAACTCAATTTGCTTTTAGTTGTGAATTATGATTTCAATTTTGTGAT CTGAAGTTCAGTTTTCTCTACTCTCAACACTCAACCATGGAATTTTTTAAAAAATTGTTGGGTTTTTAATTTTGAAGATG TTGAAATTGAAGAGGAAGAAAATGAAGATGAAGAACCACATTCATGTTTTCTGAGTTTTTAATTTTAATTCCAATTTTTT AATTATTTTTCTGGTTTAATTACATTTTTAACCTTAGAACCGTTAGTTTTTTGATGGAAAAGAGATGAGGGACCAAAATT GTTAACGGAGGTTAATGTTGGGGATGCATAATGAGATTTTTGAAGTTTAGGGACCCCGATGGCACATATAGCATTCGTAG GGGACCAAAAGTGCGATTAAGCCTATATTGTATCTTCTTGTGGTCTTCCGTCAGTTGACCATCCAAGGTATAAACAACCA TCTACTTTGTATTTAACGATTTTTCCCGCTGAAGTACTATGCGTCACAGATATTTTCCAAATGTGATCTAGAAGGTAGGT AGAAGCTTTGTGCAATGCATCTTTTCTCTTTTAGTGAAAGTTGGAGTTGGTAGATAGCTGCTTGATATGACATGTATGAT AAAATTGTACTTTCACTTTGTTCAATGTGCCTTTTGTAGCTTACGTGATGTACTTGAAGTTCTTTAGCTATTTCCTCATA GGCTTTGAACGTAAGAGACTTCACCGGACCATACTTATTTCCACAAGGGTATGGACGTTAGGCTTTTTGTTGACTGGTCA AAGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0234300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGACAGAATTAGCATGTTATCAGATGAAGTCCTCTGTCACATTCTCTCCTTTCTCTCAACTGAACAAGCTGTTGC CACAAGTGTTCTCTCAAAGAGATGGAAGCACCTCTGGATCTCAGTATCCGTTCTCGACTACGACGACGAAATCTATCTCA GAAACAACAGACCCCATTCTTGCTTTGAAAGGTTCGTATACGCAACCATTCTACCCAGAGATGCTCAACAACCCATCACA AGGTTGCGTCTTATATACGGGCGTTATGGTTCTGAACTTTCCGATACCGATGTCAGTCATGGCCGTTCGAATGCTGATAT CATTGTTTGGGTAAAAACGGTTATACGACGCGGAATTCAGAACCTTGACATCCAGATACATCCTCAAAATTATACTATTA GTTTGAGCAGCTGCATTTTCAGTTGCCAAACCCTTGTTGTTCTCAAGTTGTCAGGGTTATCTCTCAATGTGTCTTCTTCA GTTGAGCTTCCCTCACTCAAATCCCTACATTTGGATCTTGTTAAATTTGTGGATCCTAATTATCTTATGGAGCTTCTTTA TGGCTGTCCAATGCTTGAGGATTTGAAGGCAGAATGGATACATTATGCTGTTGAGGAGTATGATGTTAAGGAAGAGTTTA AATACTTACCCAAGTTGGTCAGGGTACATCTACGTTTTATTTCTATGTATGATATTGAAATTCTTCTGAAAGCAATATGT AATGTGGAGTTTTTGAGTATCAAACAGTTGCGGGATGTTGATGAGGTTCCTGAATTTTCTCATTTAAGATATTTGTCCCT CTCCTTGGATATTCATAGCTGGCATTCGGTGCTTTTGATGCTCAAGAGTTGCCCCAACCTTCAGAGTTTTAAACTTAATT TGCGTCGATCTTTTGAGGCTGTGGATGTTCTACCTTACACTCACTTTGTTGTTCCTGAATGCCTTACATCACACCTTAAG AAGTGCTATCTCAAATATTACCGAGGCACAGAATGTGACCTACGATTTGCAAAATATATTATGCAGAGTTCAACATCTTT ACAGTCCATGAAAGTTCTTAGTGTTTCACCTAATTCATTTGAAGCGCTAAAGGACTTAGCTTTGTTCCCAAGGAAATCCA CATCATGTGAACTTTCTTTTAATTTATATGGTTTTCAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0234300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDRISMLSDEVLCHILSFLSTEQAVATSVLSKRWKHLWISVSVLDYDDEIYLRNNRPHSCFERFVYATILPRDAQQPIT RLRLIYGRYGSELSDTDVSHGRSNADIIVWVKTVIRRGIQNLDIQIHPQNYTISLSSCIFSCQTLVVLKLSGLSLNVSSS VELPSLKSLHLDLVKFVDPNYLMELLYGCPMLEDLKAEWIHYAVEEYDVKEEFKYLPKLVRVHLRFISMYDIEILLKAIC NVEFLSIKQLRDVDEVPEFSHLRYLSLSLDIHSWHSVLLMLKSCPNLQSFKLNLRRSFEAVDVLPYTHFVVPECLTSHLK KCYLKYYRGTECDLRFAKYIMQSSTSLQSMKVLSVSPNSFEALKDLALFPRKSTSCELSFNLYGFQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32212
2 378 377 7.1E-76 –
PANTHER
PTHR32212:SF263
2 378 377 7.1E-76 –
Gene3D
G3DSA:3.80.10.10
3 304 302 2.9E-29
IPR032675
SUPERFAMILY
SSF81383
3 45 43 4.58E-11
IPR036047
Pfam
PF00646
4 41 38 5.8E-7
IPR001810
SUPERFAMILY
SSF52047
119 292 174 3.92E-13 –
Pfam
PF07723
165 190 26 3.9E-5
IPR013101
Pfam
PF08387
311 351 41 2.8E-12
IPR006566
SMART
SM00579
313 381 69 1.6E-8
IPR006566

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0234300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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