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LotjaGi1g1v0240700.1

Overview

Field Value
Gene ID LotjaGi1g1v0240700
Transcript ID LotjaGi1g1v0240700.1
Lotus japonicus genome version Gifu v1.2
Description ethylene-responsive transcription factor; TAIR: AT1G78080.1 related to AP2 4; Swiss-Prot: sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4; TrEMBL-Plants: tr|A0A0L9UG48|A0A0L9UG48_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0240700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:57406690..57410028) extracted from Lotus japonicus Gifu genome v1.2.

GCGATTAATTATGAAATTAGCACTAATAATCAAGGTGGCATGGTGCTATATAAACGAGTGAGTGTCTGAAAGGCAAAATC AAGAGCGGCGAGAGATCACCACACACACAAAATTTACATCACCTCCATTTTCTTCAGAGCGTTTCAGATTGTGTTTCTTT TCTTCTTTCTGTTGATTTTCTCAACTTAATCACTTTTCCCCCTTTCTGTAATTCCCCGCTTCTCTGAATCCCTTTCTGTT AATCATCTGTCTTTCAAGTCAAGATTTTTGGGTTTGTTTTTTCAACTCTTCAGGAAGCAAACTTAGAAGAATTCCTCGAA AGCCAGGTGTTTTCAGAATCGAGATCCAGCTTTTACTGTAAAAACTTTTTTTCTTCTTAATTTCCTTAAAATCAGCTAAG AGGTTATTTTTGATTCCTCAAAGCTGTTTTTTTATTTTTATTTTTATTTTCTTCTCAAGAATCAAGAAATTGAAGAGGTT TGTCTATTTAAAATCTCTTCCATCCAAATTTCTTGTTTTTTCTTTTGGGTCTTAAATTTTCTGTGTTAACCTACACCTGT TCTTCAATTTTATAAAGACACAGGTTTAATTTTACTAGTTATGGCTACTATGATGGACTTTTTCAGCAGCACAGAGTTTC ACTCAGATCCATTCAGGGGTGAGTTGATGGAAGTTCTTGAACCTTTTATCAAAAGTTCTTCCCCAACCCCAACCTCAACC TCAACCTTCTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCTCTCCATCTTCATCAAATTCATCTCT ACCCTGTTCTTCTCCCCCTAATTCCTTCTACTCTTCTCCTTCTGTCACTCCTTTCTTCTCAGATGGTTGCTCAACATCGA TGACCCATGTATTTGCGTTATCCTTTGTGCAACCAGCAACTTCTCCTCCTCTTCTTGGCTTCAACCACCTAACCCCATCT CAGATCCATCAGATCCAATCTCAGATCCAGATCCAACAGAGCAACCACCTCCCATGGCAGAATCAGAATCAGAATCACCA TCTCAACACCACACTCAGCTTCCTTAGTCCGAAGCCGATTCCGATGAAGCACGTGGGGAATCCTCCAAAACCCACGAAGC TATACAGAGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTCGCTGAGATCAGGCTTCCAAAGAATCGGACCAGGCTCTGG TTGGGGACATTTGACACGGCGGAGGAAGCTGCTCTGGCGTACGACAAGGCTGCGTACAAGCTCAGAGGCGACTTTGCTCG GCTCAATTTCCCTAACCTCCGCCACCAGGGATCCTCCGTCGGCGGAGATTTCGGCGAGTACAAGCCTCTGCATTCCTCTG TTGATGCAAAGCTTCAGGCCATTTGTGAAGGCTTGGCTGAGATGCAGAAACAGGGGAAGACAGTGAAGAAGCCTCAGAAG AAATCAAAGGCGGCTTCGACGGCGGCTTCCAAGGTGGTTGCTCCGCCGGAGGCTCCGATGACTCACAAGGAGGAAAATGC AGTTGTTGTTGGTGGTGGTGATGTGAAGGGTTCAGAGAGCACTTGCAAGGTTGAATCTGTTGTGATCAGTGAGAGTGAGC CTTCATCAGAAGGCTCTTCTCCTCTCTCAGATCTAACCTTTGGTGATGTCTATGAGCCACAGTGGGAAGGTGATTCAGAT AATTTAAATCTGTTCAAGTACCCATCATATGAGATTGATTGGGATTCTCTGTGAAGCTAGCTGTGTTTTGATAGTGTCAA ATATCATCACATGTGTGTCTTATTTGTAGCTTTTAGTGTCTCAGGTTTGTGGTTACTGCAATGGAGTTTTTGACAATTGC AGGGCTACTATTTAGGATTTGGATTATAATTGATGTACCTTAGCTAGGTTTTTATATTTCTTGCATAGTTTATGTTAATA CTTTGTATAATCCCTCTCTACCTTAGGCCACAGCTGGTTTTTTTCTTGCTTGGCCAAGGAGAAGATGTTGAGTATTAATG GAACTTTATTATGATGTAATATATCTGCTTTCCATTTATGAAATATGAATATGAACTAGTTTATATTGAGTTATGTTGTT AGCTGGCTCAACTTGGTTATGTGTTTCTTAAACAATTTTATTCTTTGAAGGATGATTTTACTAGTAATAAGAAGAACTAA GATTTTGACACGTTAGTTTGAAGATGAAGATAATCGGCGTTGCTTTGATTTTACTAGTAATCCCAACGCGCTTAGCGTGT ATTGGATTCTGCGAAATTTAACGTTGTACATTCAACATGTATCTAGGTTACCAAAGATTATGTTATTTATATAAAGGTGG ATTATATGTAGTTCATCATTGGACTCCAAAGATCTTTCTAAACAAGCATGATTGATTTCAATTTGGGTGAGAACTCATAT GGACCTTCCAATGCTTCTTCCTTCGAGGGTGTATCGTACAATCAGGAAATTGCTTATGAAGGTATATGCTTTTCTTTTGA TACGAGGTGATTGTAGGATACTTTTTTGAGAGAAAGATATGTAGATGTGATATGGCAGCAGGTCTATACAATTGTGTGAA CAAGAATGCGGCACAGGATTTCGGCATCACCCACAAGTAATGCTACTCACACGTTAAAACTTATAGAAGCGGTTGATGAT ATTCAATGAGCTGGTGTCAGACAAATCGGCAGGATAATACATGTTTTATTTTAGTTAAGGCTTAAATACTCTTTTGGTCC TTGAAATTGTAAAGGGAATCAAATCTGATCCCTGTAAAAATTTCGCATCAAATTGGGTCCCTAAAATTATTTTTTTAATC TAATTAAGTCTTTTTGCTCAATTTTGACTAGTCAACGTCCAGTGCCAAGCCTAGTCAGCTAAGCATGGCCACATGGACTT TTTTCACATCAATTTTAGTCCCTTGAAAAATATTTTAATCAATTCTAGTCCTTGTTCTTTCACCTTCCTCTTCCACCTTC TTCCTCTTCCTCCATAACTCAAATCCTTAAATCAAGAAATTCAAAACCCTAAAAAAATTATATGTTCATCATATTCACCT TGTTCTTACTTTTGAATTTATGGGATTTGAGTTATGGAGGAAGAGGAAGAAGGTGGAAGAGGAAGAAGATGAAGGTGGAA AAATAAGGACTAAAATTGATTAAAATACTTTTCAAGGGACTAAAACTGATGTGAAAAAGTCCACGTGGTCGTCTTTAGCT GACTAGGCTTGCCACTGGGCCGTTGACCGGTCAAAATTGAGCAAAAGGAGTTAATTAGATTAAAAAAACAATTTTAGGGA CCCAATTTGATGCGAAAATTTTACAAGTACCAGATTTGATTCCCTTTACAGTTTCAAGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0240700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACTATGATGGACTTTTTCAGCAGCACAGAGTTTCACTCAGATCCATTCAGGGGTGAGTTGATGGAAGTTCTTGA ACCTTTTATCAAAAGTTCTTCCCCAACCCCAACCTCAACCTCAACCTTCTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTT CTTCTTCTTCTCCCTCTCCATCTTCATCAAATTCATCTCTACCCTGTTCTTCTCCCCCTAATTCCTTCTACTCTTCTCCT TCTGTCACTCCTTTCTTCTCAGATGGTTGCTCAACATCGATGACCCATGTATTTGCGTTATCCTTTGTGCAACCAGCAAC TTCTCCTCCTCTTCTTGGCTTCAACCACCTAACCCCATCTCAGATCCATCAGATCCAATCTCAGATCCAGATCCAACAGA GCAACCACCTCCCATGGCAGAATCAGAATCAGAATCACCATCTCAACACCACACTCAGCTTCCTTAGTCCGAAGCCGATT CCGATGAAGCACGTGGGGAATCCTCCAAAACCCACGAAGCTATACAGAGGAGTGAGGCAGAGGCACTGGGGAAAATGGGT CGCTGAGATCAGGCTTCCAAAGAATCGGACCAGGCTCTGGTTGGGGACATTTGACACGGCGGAGGAAGCTGCTCTGGCGT ACGACAAGGCTGCGTACAAGCTCAGAGGCGACTTTGCTCGGCTCAATTTCCCTAACCTCCGCCACCAGGGATCCTCCGTC GGCGGAGATTTCGGCGAGTACAAGCCTCTGCATTCCTCTGTTGATGCAAAGCTTCAGGCCATTTGTGAAGGCTTGGCTGA GATGCAGAAACAGGGGAAGACAGTGAAGAAGCCTCAGAAGAAATCAAAGGCGGCTTCGACGGCGGCTTCCAAGGTGGTTG CTCCGCCGGAGGCTCCGATGACTCACAAGGAGGAAAATGCAGTTGTTGTTGGTGGTGGTGATGTGAAGGGTTCAGAGAGC ACTTGCAAGGTTGAATCTGTTGTGATCAGTGAGAGTGAGCCTTCATCAGAAGGCTCTTCTCCTCTCTCAGATCTAACCTT TGGTGATGTCTATGAGCCACAGTGGGAAGGTGATTCAGATAATTTAAATCTGTTCAAGTACCCATCATATGAGATTGATT GGGATTCTCTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0240700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATMMDFFSSTEFHSDPFRGELMEVLEPFIKSSSPTPTSTSTFSPSSSSSSSSSSSSPSPSSSNSSLPCSSPPNSFYSSP SVTPFFSDGCSTSMTHVFALSFVQPATSPPLLGFNHLTPSQIHQIQSQIQIQQSNHLPWQNQNQNHHLNTTLSFLSPKPI PMKHVGNPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSV GGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTVKKPQKKSKAASTAASKVVAPPEAPMTHKEENAVVVGGGDVKGSES TCKVESVVISESEPSSEGSSPLSDLTFGDVYEPQWEGDSDNLNLFKYPSYEIDWDSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31657
1 377 377 1.6E-119 –
PANTHER
PTHR31657:SF46
1 377 377 1.6E-119 –
MobiDBLite
mobidb-lite
30 70 41 - –
MobiDBLite
mobidb-lite
31 70 40 - –
CDD
cd00018
173 233 61 1.99814E-34
IPR001471
Gene3D
G3DSA:3.30.730.10
173 233 61 4.6E-31
IPR036955
SMART
SM00380
174 237 64 7.0E-38
IPR001471
SUPERFAMILY
SSF54171
174 232 59 3.99E-23
IPR016177
ProSiteProfiles
PS51032
174 231 58 23.143
IPR001471
Pfam
PF00847
175 223 49 6.5E-14
IPR001471
PRINTS
PR00367
175 186 12 3.8E-11
IPR001471
PRINTS
PR00367
197 213 17 3.8E-11
IPR001471
MobiDBLite
mobidb-lite
271 301 31 - –
MobiDBLite
mobidb-lite
326 343 18 - –
MobiDBLite
mobidb-lite
326 361 36 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0240700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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