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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0244400 |
| Transcript ID | LotjaGi1g1v0244400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase 2c, putative; TAIR: AT1G34750.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9S9Z7|P2C10_ARATH Probable protein phosphatase 2C 10; TrEMBL-Plants: tr|K7KUB4|K7KUB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0244400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58526040..58527943) extracted from Lotus japonicus Gifu genome v1.2.
GTTTATTCTATTTGTCTATTTTACAGCTTGTAGCGTCGCGTTCTTCATCCAGCACTGGTAAGGGAAAAAATCATGATGGC TCAATAAAGTATGGTTTCAGCCTAGTAAAAGGGAGAGCTAACCATCCAATGGAGGATTATCATGTTGCTAAGTTTGTGCA GACACGAGATAAAGAATTGGGTTTATTCGCTATTTATGATGGTCACTTGGGAGACCGAGTGCCTGCCTACTTGCAGAAAC ATTTGTTTTCCAACATTCTAAAGGAGGTGTGTCATTACTCTCAGAGAGTTGTAAAAACTAATTATTTCTTCTATGATATT TTTGGACCAATGGTGCAACACAAAAAGTTGCTGCCATGTGACTGACGTCACGGGTTCAAGTCCTAGAAACAACCTCTCTT GTGTAAAATATAAATGTAAGGCTGCATACATTAGACCATGTGGTCAGACCCTTCCTCATACCTGCGCATAGCGGGATCTT AAATGCAACTGGCTTCCTTTTGATATTGTTGTACCAAAATTCAGATTGGAAACATTACATTCTTGTACTTCTTCATTTAA TATACCAGGAGGAATTTTGGAATGACCCCACTCTTTCTATCTCAAAAGCATATGAAAACACAGATCAGGCTATTCTGTCA CAGAGTTCTGATTTGGGGCGAGGTGGATCAACAGCTGTAACTGCAATATTGATCAATGGGCAAAGGTTGTGGATAGCAAA TGTTGGAGACTCGAGAGCTGTTCTTTCAAGAAAAGGTCAAGCAGTACAAATGAGTACAGATCATGAGCCCAACACGGAAC GAGGCAGCATTGAGACTAAAGGAGGTTTTGTCTCCAACTTGCCAGGTACTTGAAGCTTCTGCCATTCCAATTTTATGGAG TCTCATGTTCTGGTTTCTTGTTTGGATGTATAGGAGTAATTCCTGAAGTCTATGAATGAAAAAACAGTTGTTTACAGATT TCTCAGCAATCCATAAAATTAAGGTCCAGTAGGAAAAATCCTTTTCTTCATTTTACCGAAACCCTGTGTTAGAAGTATTA TATAAAAATCATTTGTGTCTTAACCCAACAATTTAAGCTTTTGGATTAGTTGGTTCATAATATGGTATCAGAGCCTCTAT GACCAAGTGGTCTAGAGTTTGATTTGTTTTTCCCCTAATTATTCTATTTCCTTTTACATGAGAGACCGTGTTAGAAGTAT AACATGAAACCATTCATGTGTCTTACCCCAACAGCTTAAGATTTTGGGATAGTTGCCTCATCAAACCCAGTTCCCAAAAA TTAATCGAGCTTGGCTATATTCATATGCTAATATCAAAGAGTTGCAACTGCAAAATTTCCTTTACTGCAAGGAGTTATCG CATTTGCGTACCTAATTATGAAATAACAGACACTTCTTGTACAGTAATATAGTGGTTTATTTGCATCCTTGAGATATAAG TGAGCTTATTTTTATCACAGCACAAAGTTGGCATTGTGTGGATGCTTACAGTAATATTAATGATGTTAATGCAAGGTGAT GTGCCTAGAGTAAATGGACAACTAGCTGTTTCTCGTGCATTCGGAGACAAGAGTCTCAAGTCACATTTGCGATCAGACCC CGATGTACAGAATACCAATGTAGATGCTGATACTGATATTCTAATCCTTGCAAGTGATGGAGTTTGGAAGGTGAAATAGA AGTGTTATTTTGTTGGCATGACTCTTGTTTTTAAAGGTTAATATAAAAACTAGAAAAAACATTCCCTTTGCTTTTAAAAC CAGGTAATGGCTAATCAAGAGGCAGTGGATATTGCTAAAAGAATGAGAGACCCACAGAAAGCAGCTAAGCAACTAACAGC TGAAGCATTAAAAAGGGACAGTAAAGATGATATATCTTGCGTTGTGGTTAAGTTCAGGTGGTGA
CDS sequence (LotjaGi1g1v0244400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATTATCATGTTGCTAAGTTTGTGCAGACACGAGATAAAGAATTGGGTTTATTCGCTATTTATGATGGTCACTT GGGAGACCGAGTGCCTGCCTACTTGCAGAAACATTTGTTTTCCAACATTCTAAAGGAGGAGGAATTTTGGAATGACCCCA CTCTTTCTATCTCAAAAGCATATGAAAACACAGATCAGGCTATTCTGTCACAGAGTTCTGATTTGGGGCGAGGTGGATCA ACAGCTGTAACTGCAATATTGATCAATGGGCAAAGGTTGTGGATAGCAAATGTTGGAGACTCGAGAGCTGTTCTTTCAAG AAAAGGTCAAGCAGTACAAATGAGTACAGATCATGAGCCCAACACGGAACGAGGCAGCATTGAGACTAAAGGAGGTTTTG TCTCCAACTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTAGCTGTTTCTCGTGCATTCGGAGACAAGAGTCTCAAG TCACATTTGCGATCAGACCCCGATGTACAGAATACCAATGTAGATGCTGATACTGATATTCTAATCCTTGCAAGTGATGG AGTTTGGAAGGTAATGGCTAATCAAGAGGCAGTGGATATTGCTAAAAGAATGAGAGACCCACAGAAAGCAGCTAAGCAAC TAACAGCTGAAGCATTAAAAAGGGACAGTAAAGATGATATATCTTGCGTTGTGGTTAAGTTCAGGTGGTGA
Protein sequence (LotjaGi1g1v0244400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDYHVAKFVQTRDKELGLFAIYDGHLGDRVPAYLQKHLFSNILKEEEFWNDPTLSISKAYENTDQAILSQSSDLGRGGS TAVTAILINGQRLWIANVGDSRAVLSRKGQAVQMSTDHEPNTERGSIETKGGFVSNLPGDVPRVNGQLAVSRAFGDKSLK SHLRSDPDVQNTNVDADTDILILASDGVWKVMANQEAVDIAKRMRDPQKAAKQLTAEALKRDSKDDISCVVVKFRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 1.0E-136 | – | |
| CDD | 1 | 234 | 234 | 1.60294E-84 | ||
| Pfam | 1 | 227 | 227 | 2.4E-55 | ||
| SMART | 1 | 232 | 232 | 1.9E-70 | ||
| ProSiteProfiles | 1 | 234 | 234 | 47.704 | ||
| PANTHER | 1 | 234 | 234 | 1.0E-136 | ||
| SUPERFAMILY | 1 | 235 | 235 | 8.37E-65 | ||
| Gene3D | 1 | 236 | 236 | 4.8E-75 | ||
| SMART | 4 | 234 | 231 | 7.5E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi1g1v0244400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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