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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0245000 |
| Transcript ID | LotjaGi1g1v0245000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein PLANT CADMIUM RESISTANCE 2; TAIR: AT5G35525.1 PLAC8 family protein; Swiss-Prot: sp|P0CW97|PCR3_ARATH Protein PLANT CADMIUM RESISTANCE 3; TrEMBL-Plants: tr|I3RZW1|I3RZW1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0245000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58843559..58844702) extracted from Lotus japonicus Gifu genome v1.2.
CATCCAAAAGTTGAACAAATTCCTTCCATCCAACACAAGAGCATTACATTAACTAGTTAATCATGTATAAAACAGTAGCA GGCTCTACCGACTGCCAACCAACACCTCCTCCGCCACCGCAACCTCCCGTCGAATGGTCCACCGGGCTATATGATTGCTT CTCTGACTACAACAATTGTAAGTGTGTGTTTGTTTCTTTGATGCACTAACTAACTCAAACATGATTTCATATATCCTAAC ATATAAACGGAGAAATTAAGAAACAAGAATTTGTATCACTTAGCTTCTGGTTATACATCACATTCATTATATATGAATTA ACTCTATTTATGAGTTATTGTGTGTGAATTTCTTTCAGGTTGCCTAACGTACCGGTGTCCATGTATAACATTTGGTCGAA TTGCAGAGATTGTTGACAAGGGATCCACTTGTAAGGAGTTAACTCATTCATTTATATATGATTAATTAATATATAACAGC TTTTGGATATGTTATGTTTTGAATTAATTTGTTGCATGCAGCTTGTGGTGCTAGTGGTTTCTACTTTGTTCTACTTGGGG GCTTATACTCAGCCAACTACCGGACAAAGATAAGATCTCAGTACAATTTGAAAGGAAATAATTGGTTGGATTGCTTGACT CATTGCTTCTGCAATAAATGCGCATTGTGCCAAGAGTACCGTGAGCTTGAAAAACAAGGATTTAACATGAAGATCAGTAT AATGTGTATCTCATATTAATATCCATCTTCTTTTTTCTTGAGGATAATTAACTAATGTTTGGAAGATAGATAGATAGATA CTAATAATTAATATTATCTTTTTTTGGTTGAACTTAATTGATTAATATATAGGGTGGCATGGAAATGTTGAGCAACAGAC AATAGGAGTAGCCATGACTTCAACCGCTCCAACAGTGGAACAGGGCATGACCCGTTGAAATGAGGATGTGTGCATGCATG CATGTGATGAAGTTCTTAATTCATACAAGTTTGTTGTGTTTTTTTTTTGTTTTTGTTTGAGAACAAGCAAATTATATTAA TAGAAAAGATAAATCATGAGAACAATTCTCTCATGTGGATTGGTTAATAAAGACTATAAAAGATACAACATGGATCCCGA TCATGAGAACAATCCTCACAAGTT
CDS sequence (LotjaGi1g1v0245000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAAAACAGTAGCAGGCTCTACCGACTGCCAACCAACACCTCCTCCGCCACCGCAACCTCCCGTCGAATGGTCCAC CGGGCTATATGATTGCTTCTCTGACTACAACAATTGTTGCCTAACGTACCGGTGTCCATGTATAACATTTGGTCGAATTG CAGAGATTGTTGACAAGGGATCCACTTCTTGTGGTGCTAGTGGTTTCTACTTTGTTCTACTTGGGGGCTTATACTCAGCC AACTACCGGACAAAGATAAGATCTCAGTACAATTTGAAAGGAAATAATTGGTTGGATTGCTTGACTCATTGCTTCTGCAA TAAATGCGCATTGTGCCAAGAGTACCGTGAGCTTGAAAAACAAGGATTTAACATGAAGATCAGTATAATGTGGTGGCATG GAAATGTTGAGCAACAGACAATAGGAGTAGCCATGACTTCAACCGCTCCAACAGTGGAACAGGGCATGACCCGTTGA
Protein sequence (LotjaGi1g1v0245000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKTVAGSTDCQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYRCPCITFGRIAEIVDKGSTSCGASGFYFVLLGGLYSA NYRTKIRSQYNLKGNNWLDCLTHCFCNKCALCQEYRELEKQGFNMKISIMWWHGNVEQQTIGVAMTSTAPTVEQGMTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 20 | 157 | 138 | 7.5E-58 | – | |
| PANTHER | 20 | 157 | 138 | 7.5E-58 | ||
| TIGRFAM | 24 | 119 | 96 | 9.6E-32 | ||
| Pfam | 25 | 117 | 93 | 5.4E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0245000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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