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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0245300 |
| Transcript ID | LotjaGi1g1v0245300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein PLANT CADMIUM RESISTANCE 2; TAIR: AT1G14870.1 PLANT CADMIUM RESISTANCE 2; Swiss-Prot: sp|Q9LQU4|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2; TrEMBL-Plants: tr|I3RZW1|I3RZW1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0245300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58888074..58891155) extracted from Lotus japonicus Gifu genome v1.2.
TCTTAATTCCCTCACAATTAAAATTGAGAACCCAAATTGTATCACATAGTTAAACCAAACCTTTTACTTTAATTATAAGC GTTATCTTATCTTATATATATCCATCCAAAAGTTGAACAAATTCCTTCCATCCAACACAAGAGCATTACATTAACTAGTT AATCATGTATAAAACAGTAGCAGGCTCTACCGACTACCAACCAACACCTCCTCCGCCACCGCAACCTCCCGTCGAATGGT CCACCGGGCTATATGATTGCTTCTCTGACTACAACAATTGTAAGTGTGTGTTTGTTTCTTTGATGCACTAACTAACTCAA ACATGATTTCATATATCCTAATATATAAACGGAGAAATTAAGAAACAAGAATTTGTATCACTTAGCTTCTGGTTATACAT CACATTCATTATATATGAATTAACTCTATTTATGAGTTATTGTTTGTGAATTTATTTCAGGTTGCCTAACGTACTGGTGT CCATGTGTAACATTTGGTCGAATTGCAGAGATTGTTGACAAGGGATCCACTTGTAAGGAGTTAACTCATTCATTTATATA TGATTAATTAATATATAACAGCTTTTGGATAATTTATGTTGAATTAATTTGTTGCATGCAGCTTGTGGTGCTAGTGGTTT CTACTTTGTTCAACATGGGGTCTTTTACTCAGCCAACTACCGGACAAAGATAAGATCTCAGTACAATTTGAAAGGAAATA ATTGCTTGGATTGCTTGACTCATTGCTTCTGCAGTAGATGCGCATTGTGCCAAGAGTACCGTGAGCTTGAAAAACAAGGA TTTAACATGAAGATCGGTATAATGTGTATCTCATATTAATATCCATCTTCTTTTTTCTTGAGGATAATTAACTAATGTTT GGAAGATAGATAGATAGATACTAATAATTAATATTATCTTTTTTTGGTTGAACTTAATTGATTAATATATAGGGTGGCAT GGAAATGTTGAGCAACAGACAAGAGGAGTAGCCATGACTTCAACCGCTCCAACAGTGGAACAGAGCATGACCCGTTGAAA TGAGGATGTGTGCATGCATGCATGTGATGAAGTTCTTAATTCATACAAGTTTGTTGTGTTAGATCTGAAGCATGACAATA TATATATATATATATTTCTGGGCCTTTTGATTTGGGCCTTTTGATGAAGTGGGCCTTTTGATTTAGCAAGAGGCTGGTTT GCGGACTTGCATGCTTGAGATATTTCTGGTTGTTTTTGAACCATTGAATTACTTTATCCTTGTGAGCTTTGGAAGCATCA AAAGCCTTCCACCACTTGATAAGGGCATGTTTGTTGAGAATTGGTTGGGGTTTGGCTTTAAGACCGTACCTCCAAGAGAA TACCCAAGAAAGGGAAAAGATTGTATAAAAGTTTAAACAATCAGGATAATTGTTAAACTCTTTGTCCCAATGTTTCAGGA AATGAGTAGTTTAGGGATATATATATCTGAAGAATAAAGTAGTTTTTGTGTTAATTTTCTTTTTCTTTTCATTTCGCATT TGTACCTAGAATTCTCAAAATGTGATGCTAGTTCCAACTTCATCAATTCTGGATATGAAAATTCTGTACCGAGTAAAAGC AGACTCCTTATCATGAATTACAGTATAATAAATTTAAGGAATAAGGATATAAGTTGTTTTAAAAAAAAGATATAAGTTTA TTTAAAAATAAATGTATGACCTATTTAAGTATTGCAAGTATTCATTTTCTAATGCACCAAAAAAAATTATCTCAAGTATA TTAGGTTGCTTTTTTCTTCATAAATTTGTGTCCAACTTATCTAAATTTGCACTACTTTTTAGTTCTTTGAACTTATTATC TGTATATAGGTTTCTAAGCTCTCCTTGTGCTTAATTTAATTTAGTTTGCTTATAAAAAAATATCTCACTATAAACTAAAG TATGATACTGAATAAGTTTTGATAACCTTTAAAATCCAACATATAATTTATCTTATTTCTATCTCTATCTTTTATCTTAT ATAATCGTTGCTATTTTAAAAAAAATATTTTATTATAATTTCACATGTTTGCTTACAAATCTGCTAGTTTCTTTATAAAT ATGTTCGTATTTTTATTTTATGTCAAAGTGTTGTCTAATAACACTTACAAAATGTAAGATTAAATACTAAAATGTTGTCG AAATTATTAAAAGAAAAATATATTTACTTTTAATATTTATAATTTATCATATCTATTATCTCTACGCAGCTTAACAACAC GAGAGATTCACATTATAAATTCTCTTCTTTTTCTATCATAGTAAAGAATATACAAACTTTAATTTTTTTCTCACACCTTT TTTTCTACTGATTTTTTTTCTCTTCAATTTTTCTCTCTTGAACAAGACAAATCAAAGCATAAATGACAACAAACATCAAA TTTTATTGTTTTTGTCTTCTCTTTGTAATTTGAAGCTCTTTCTCATAATTAACTCAAAAGTATCAAACCAAATAATGGCA CGCATTCAGGATTCGGCTATGAATATGTGGATAAGAATGCGGTATTCTTATCCACTTAATCAAAGCCGAATTCTGAGATA ATAATTTTAAGACTCAAGATGGAACTAGAAGAAACAGTAGATGTTATTTATTTGTCTCGATCTGCGAGGGTCAGGTATTT TCCCCTTCTACTGCGAATTCTCCAATCTAGCTCTGATATCATCCTGAGCTAGATTTTTTTTTCATGTTATACTTGTTATC CTTTTGGGAAGGGGAAATTCTCTCAGCATAACTTTCTTCAATGAAGAGCAGGCCGAGCTAGTTCAAGGACCCCTTATTTC AAGAACAACAACATGAAGGCTATGTAATTTAACAACCCTAATAGTTTGATAATCTCTCTATCATGAAGAGAAAAATCTGA TTGACAAATTAAAAGTGTTTGTCCGCAAAATTTTCCAAAAAGAGCAAGTCGAGCTAGTTCAAGCAAGGACCTCTTATTTC AAGAACAACAACTGTAAGATCAAGGTTTGATCAGTGGTTGCATCTCTATGTTTTGATGATTACAATTAAGGTCTGTGATG ATGAACAATTGTGGTACCCTAACGTTTGTCTTTTTAAGATGT
CDS sequence (LotjaGi1g1v0245300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAAAACAGTAGCAGGCTCTACCGACTACCAACCAACACCTCCTCCGCCACCGCAACCTCCCGTCGAATGGTCCAC CGGGCTATATGATTGCTTCTCTGACTACAACAATTGTTGCCTAACGTACTGGTGTCCATGTGTAACATTTGGTCGAATTG CAGAGATTGTTGACAAGGGATCCACTTCTTGTGGTGCTAGTGGTTTCTACTTTGTTCAACATGGGGTCTTTTACTCAGCC AACTACCGGACAAAGATAAGATCTCAGTACAATTTGAAAGGAAATAATTGCTTGGATTGCTTGACTCATTGCTTCTGCAG TAGATGCGCATTGTGCCAAGAGTACCGTGAGCTTGAAAAACAAGGATTTAACATGAAGATCGGGTGGCATGGAAATGTTG AGCAACAGACAAGAGGAGTAGCCATGACTTCAACCGCTCCAACAGTGGAACAGAGCATGACCCGTTGA
Protein sequence (LotjaGi1g1v0245300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKTVAGSTDYQPTPPPPPQPPVEWSTGLYDCFSDYNNCCLTYWCPCVTFGRIAEIVDKGSTSCGASGFYFVQHGVFYSA NYRTKIRSQYNLKGNNCLDCLTHCFCSRCALCQEYRELEKQGFNMKIGWHGNVEQQTRGVAMTSTAPTVEQSMTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 20 | 154 | 135 | 7.3E-63 | – | |
| PANTHER | 20 | 154 | 135 | 7.3E-63 | ||
| TIGRFAM | 24 | 119 | 96 | 2.0E-32 | ||
| Pfam | 25 | 117 | 93 | 1.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0245300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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