Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0246000 |
Transcript ID | LotjaGi1g1v0246000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Allergen, putative; TAIR: AT4G08685.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|Q9LX15|DFC_ARATH Protein DOWNSTREAM OF FLC; TrEMBL-Plants: tr|I3SBU0|I3SBU0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0246000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58991203..58994413) extracted from Lotus japonicus Gifu genome v1.2.
CTAGGAACATGTAAAAGGTGTCCAATAACCTCCTTTAGAGTCTATGAAGTGTTTTCACCTTTCAGTTAGCTTATAAACTT TCAGCTAGTTTTTCAGATTTCACCTAATTTATCAGTCAGGCATGTCAAACATAGCCTAAGTAACCTCATTGGAGATACTC TTAAATACAAAAAGTGGAATTAGTCCAATTTTGTTTCCAACAAAATCACAACATGTGTGTGACAGTAAACGTTCATCCTT AGCTAATCCCACACTCTAATCAAATGAGAAAAATTTTCGGCGCGTCACGCGGAATTAACAGATTCCACTTCCATTACCAT AACTCCAGCTTGTGTTCACTAATTTGAAAATCACATGCAGCACCGACAACGCCAGCTACATCAATTATTATAATAACCCA TGATCACCGCCACTGTTCCTTTCCTCTACCCTCCTCCCTTCCCTACACCCCTCCTCACTCTCACTCCACACCACCAATCC ATTCCCAATCATGACGTGTCACATTCTAAACACGATACCACTATCTTCTACAGTAGGCTCCAGCACAGGTTAACATACAC CACGCGTTTTGCTTTTGTTTTCTTTTTCTGTATACCGGTTTCCCCATCTTTACTTCACTCACACTTTTTCCCTCAATTTC ACTCATCCATAACCACAGATAACCCTCTTCATCTTCTTCTTCATCTTCTTCTTGTGTGTGTGTGATTGTGATTCTCTTTC TTTCTCGCTATGGCTTTCAGATTTGCGTTTCTGCTTGTTCTGTGTGTGGTTCCGGCGATGGTTGCTGCCATTCGCCCAGC TAAGAACCCTTTCATCGTCAAAGGTTGCGTCTACTGTGACCCATGCCGTGCTGGTTTTGAGACCTCAGCCACTACCCGCA TTGCTGGTAACTCCTTCAGTCTTCACCTCTTCTATCAGTTAATTTTTGCATAATTTTTTATTTGAATGATGCAAAATCTC AGATCTGTTTCCTGAAGTGGATCCCTGTTGTTTCAGTGTCAAAATTTTGAGTTTAATCGTTCTTGAAATCTTTGATTTTG GGAAATGTGGTGTTTAGTTTTGAATCTTACTTGTGTTGCTATTTTAGATTTCATTTTTATTGTACTATTGAGATTAGCTT TTTGTGTTACTTGGGTTTCAGATCTGATCTGACTGTGTATTTTAGTTAGATTGGTGTAGATTTGGAGCTATTATTGTTCA TTATGCGTGTTTGGTTAACCGACTTTACAGAAAGTTAACTGAACTCTTCTATATCAGTAACCGTATGCTTTGATATCCTT CATTCTAAAGCTAAAATCAAATACTATGCTTAGTTGTGTTTAATTGACATTCAAACACACTTAACAGTGTGCAGATCTAG AAATGCAGTCCCTGAATTTTACTTTGATGATAGCTCTATTAGTTAATGGTTTATTGATGTAACCCCTAAATAATCCTCAT CCTACTTCATGTTAGTCTAAGCTAAAGAAACACACATTTTTAAGTCATCAAACTATTTAAATTTATGGGGACTGATGTGA TCACCTTAAGTAGTTAAGACTGAAGAGGATTATATGAACATTGGAAACTACCTCTCGTGGTTTATTACTATTAATAGGCT AAATGTTTGGACTTCTGATTGTTACTTCTATGCTATGCCTTTGTTTTTTTATTGCTGGTTAGGTATTGGTGATTATTGCC TGAAATCTTTTGCAAATTTGTAACATATTTTTGTGGTTGATGATTCTTCCCAGGTGCGGAGGTTATGCTGCTGTGTAGGC AGAAGAATTCCAACGAAGTTGTATACACAAAGCGGGGCTGGACTAACTCAAAGGGTGAATACACAATCTCCGTGTCTGAG GATCACGGCGACCAGATCTGTGATGCCAAGCTTATAAGCAGCCCTCATCCAACCTGCAAAGAGGCCACCCCAGGCCGTGA CCAAGCCCGTGTTATTCTCACCCGCTACAATGGCATTGCCTCTGATGATAGGTTTGCCAATGCCATGGGCTTCATGTCTG AGAATGTTGCTGCTGGCTGTACTCAGATCCTCAAGCAATACGAGGAGCTCGATAATGAGAACTAATTTCAGGGTATTATT CACTTTGGAATTGGTTTTCCACGTGTCTATTAAATTCTATCCTGATGGAGTGTTATCTTGACATTTTCAGTTTATGTTTG TATGTTAGTGTACCCTGCTAAACAATATTATTATTACGTGAAAATGATGTGTCTTGGACTAGAGGATGTAGTTACTGTGT GTTGCTATCATATAGTATTCTTTTATATCTGAATCTGTTGAATGTGTTTTGTTCGCAATGTAGAATCCTTTGTAACAAAG GGCCAATCTTTGGTTGGCTTCTTTCCATGAGGATTTGCCGGGCACAATGTGAAATAAATCTGTAATCTGAGACCTCTCAT GCGATTTTAATACGAAAAATTCCATTTAGTTGCCTTTGTTAGTAACTTAGTATGGAGTCCTGAGGGTTGTGATTTTCTTC CTAGCATATTTGATTTTGGGAAATGAAGTCCTGTTTCAGTGATAAGTCACTTCTCTGACAAAACACTAGAATGTTAACCA AATCTCCTTTAATAATTGCATTGTGTTTATATGTAGGTGTGGGTAAGTTGATAGGGATTGATCCATTTTGAAGAGTGATA TTGAGTTCAGGCTTTAGTTAAAGTTTAGATCTTTAGAACTTCCTGTGGGCTTCTATTGATGGGGGGACTTGATTTCATGG TATGGTATGGGTTGAATGAGTGCAATTCGATCAAGCTCCACCACGGCATATTGGTCGGTGTGGTTGTTTCAGTTCATACT CCAAGAAGCCACTCTATGTCTTCAACCTCTTCTTCTTGCACTTTAGCCTCTGTTTCTGATTTGGGCATGTGGGGATGATA TTAGAAGAGAAGGGAATTACAGAAAAATAAAAAGGCATGTTCCCAAAATTCTCCATGATCTGCCTCTTCCTACTTCGATC TCCACCTTTTCTCCTTCCTATTTGTTCATCTCTATCCTCTCCTCTGTTTTCTGTTCTCTGTGTGGCTCCCTGCCTCCCTC TCCAGATCTAATCTTTTTGGTTAATAACTTAGGGTTAAATTAGATGGACAAAACGTGGTGGGCTTCAAATTAATATATTA ATACAAAATTTTAAAATTTATGGTGGTTGAAAAAAAAAAGAATGAGATTAAATTTAGAGTTTAATGAATATGCAATGTCA CTCTAATATTG
CDS sequence (LotjaGi1g1v0246000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCAGATTTGCGTTTCTGCTTGTTCTGTGTGTGGTTCCGGCGATGGTTGCTGCCATTCGCCCAGCTAAGAACCC TTTCATCGTCAAAGGTTGCGTCTACTGTGACCCATGCCGTGCTGGTTTTGAGACCTCAGCCACTACCCGCATTGCTGGTG CGGAGGTTATGCTGCTGTGTAGGCAGAAGAATTCCAACGAAGTTGTATACACAAAGCGGGGCTGGACTAACTCAAAGGGT GAATACACAATCTCCGTGTCTGAGGATCACGGCGACCAGATCTGTGATGCCAAGCTTATAAGCAGCCCTCATCCAACCTG CAAAGAGGCCACCCCAGGCCGTGACCAAGCCCGTGTTATTCTCACCCGCTACAATGGCATTGCCTCTGATGATAGGTTTG CCAATGCCATGGGCTTCATGTCTGAGAATGTTGCTGCTGGCTGTACTCAGATCCTCAAGCAATACGAGGAGCTCGATAAT GAGAACTAA
Protein sequence (LotjaGi1g1v0246000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFRFAFLLVLCVVPAMVAAIRPAKNPFIVKGCVYCDPCRAGFETSATTRIAGAEVMLLCRQKNSNEVVYTKRGWTNSKG EYTISVSEDHGDQICDAKLISSPHPTCKEATPGRDQARVILTRYNGIASDDRFANAMGFMSENVAAGCTQILKQYEELDN EN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 4 | 4 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
Phobius | 1 | 20 | 20 | - | – | |
SignalP_EUK | 1 | 20 | 20 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
PANTHER | 5 | 160 | 156 | 1.5E-66 | – | |
Phobius | 5 | 13 | 9 | - | – | |
PANTHER | 5 | 160 | 156 | 1.5E-66 | ||
Phobius | 14 | 20 | 7 | - | – | |
Phobius | 21 | 162 | 142 | - | – | |
Pfam | 30 | 112 | 83 | 2.8E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0246000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…