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LotjaGi1g1v0248000.2

Overview

Field Value
Gene ID LotjaGi1g1v0248000
Transcript ID LotjaGi1g1v0248000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Methyltransferase-like; TAIR: AT1G36310.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8; TrEMBL-Plants: tr|A0A0R0JQC1|A0A0R0JQC1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:59547819..59552335) extracted from Lotus japonicus Gifu genome v1.2.

TTTTCCCTTCCCTGTTTTCCTTTCCATCTATTTTCACCCTAAACAAACACAGTGTGAATGTTCCTCATTGATATCCAAAC CCTAAATCTCTTCTTTCCAGCGATCAATGGAGACTCCCTTCAATCAGTCTTTTCGAGCGACGCCCCTCAAAGAATGGTAC CACGCCTTTTCCCTCATCAATCGTTTCGCAATTCGTGTTTCCAAACTTCGAATCTTTTGCATTTGGGGGTTTTGAAAAAC GTCTTTGTCTGTGTCCATTATTTGTGATTGGTTTTTCCAAATTGAGTGAAAAATTTCATCTTTTCAACTGGGTATGGTAT AGAGTTGGTATTTGTTGGATTTCTACAGTGAAAAACAACACCCAACTAGTGAACATGTAACCCAAAGGAGTTTTCTGTAT TAATAGGTTTTTTCTTTCTGTTTAGAATTCAATTCAATAGTATTTTTGTTAATCATATGATGCTAATTGAACTCCTAAAG TTGGAATTTTTGTAACTGGGTGTTGTAGTGATTCTGAGTTTGTGTTACTCTTCTCAATCAGTTGTAAATGAGAGATGTAA TTTTCATATGTTGATTTTGAACTTTATATTCGTATATGAATGAATCACTATTGGGTAATAGATTTGATACATAAATGAGA GACATCATTTGCAAAATTTGCTTTTAACTTTATGCAGGTGAATGGTTCATGCTCATAGTGCTCTAAAACTAACATCAAGT AGATTCTTCTACAACCCTAGGGGAGTTCTCGGTTTACTCACTGCTATTGGTGGTTGTGTCTGTCATTCAGGATTTTGTTC AATGACACAAATCAATTCTGAAGTGGGTTCTAGTTTATGTAGTATTCTTGCCCCAAATGGGGAACCCTGCATCACAGATT CCTCATCAGTAGTTGAGAACCCTACCACTTCGTCGGTGAGCGTGCGGTCTACCCCTGAAATTGAAAAGAAGTTTGTTCAT CATGTTTATGATGCTATTGCGCCGCATTTCAGTTCCACTCGGTTTGCCAAGTGGCCAAAGGTTGCCTCTTTTTTGTCATC TTTGCCTTCAGGATCTCTTGTCCTGGATGCGGGATGCGGGAATGGGAAGTACTTGGGTTTAAATCAAGATTGTTTTTTTA TTGGATGTGATATAAGTCCTTCGTTGATTAAAATATGCTCAGATAGAGGACATGAAGTTATGGTTGCAGATGCAGTGAAT CTTCCTTACAGAACTGGTTTTGGTGATGCGGCAATATCTATAGCTGTGTTACATCATTTGAGCACTGAGAATCGAAGGAG AAAAGCAATAGAAGAGTTAGTCCGAGTTGTTAAAAAGGGTGGCCTTGTTCTTATTACAGTTTGGGCTGTAGAACAAGAGG ATAAATTGCTGGTCACCAAATGGACTCCGCTTGCAGAAAAAAATCTTGAAGAGTGGCCAGAACCTGGAAATCATTGTGCT CGGGTTCCTTCATTTTCATCATTGGAAAGTATTCCAGAAAGTGAGGAGAGTAGCTCGGTTGAGCACGTTAAAGTTTGCAA TGAGTCAAAATCATCAAGTGATTTGAATGAAGAAAAAAAATTGAAGAATCAACAGGAGTATTTTGTTCCTTGGCATTTAC CTTATCATCGTGCAGAAATCAGTGGTTCTTCTGCAGATGCTCTTGCTACTGGTCTTGCAACTAAAGATGACAAAAAGGGG GCTGTAGTGTACAATAGATATTATCATGTTTTTAGTCAAGGCGAGCTTGAAAGGTAACATCACACCCTCCCCACATATGA ATTTTTTATATGAATATGGAATAAAATTAACAAATCTTTAATCCACTTCTTTTCTTCTTTTTATCTTAGCTTGTTTGCCA TGGGAATGTATCTTCAAATGTACAAGTTGTTTTAGAATCTTCTTGGAAGTTTTGTTTCATCTTCCCCCATGTAATAAGTT GCTAAAGTTGAAATTACACCAATTAGGCTTCATGTTGGGCATGCTTGATCTCAGATGTTGATTGTGTTATGTTGTCATAC TTCATATATTAATCTAAAATTATGGATTGTATAAGCTAAGTAGGATGAGATGGAAACATATACAACAACAACAGCAACAG CAACAAATGTCTTATCCCACTACGTGAGGTCGGCAAACATATGATTCAGAAAAGTCATTTCAAGGTTCAAACTTAAAACA TTGCTGGAATGTTAGCAAGTTATCAAATGATGAATACTCGCATAGTCTAATTTGCTTTTTTTTGGCACTCCTATCAGAGA TTGAATTGCTATTTCTTAGAGTAAAAGTTATATTCTAAGCCATGATGGTTTTAAAATATAAGGATAGGTGGTAACTGGTA ACAAACAAGAAGCTCCAAATATTGAGGCAGTGTCATGCCATTATGTGTCTTCTTTACCACTTAAATTAGTCAGCCGGATC TGAAGATGCATGACAAATTTATAATTTACTTTTTTTCACTTGTAGGTCCCTGCTACTCTATATTTTAAAGGCTTAAATAC TCTGTAGGTCCCTGAAATTGTATGCCGTACGAAAATAAGTCCCTGAATTTTTTTTTTCCGATTCCGAATCCCTGGAATTT TTTTTTAATCAGAATAAGTCCCTACTCGTGTTTCCAGCCTATGTGACACAATTTTTGCTGAGTCATTTATTCCATGTTGG CTTTTCTATTTTATTTAAATACACATGGATTAAAAAAATAAAATAAAATATTTTAATTTTAATTTAAAATCTTTTTAGGG TTAATTAGATTTAGTGATTTAGGGTTAATTAGATTTTAATTTTAAATTTAAACATTTAAATTTAAAATTAGAATCTTTTT AGGGATTTAGGGTTAATTAGGTTAATAACATTTTAATTTTAAATTTAAATGTTTAATTTTTTTTTTAATATATGTGTATT TAAAAAAATAGAAAAGCCACGTGGAATAAATGACTCAGCAAAAAATGAGCCACATAGGCGGGAAACACGAGTAGGGACTT ATTCTGATTAAAAACATAATTTCAGGGATTCGGAATCGGGAAAAAAAATTTCAGGGACATATTTTCGTACGACAGACAAT TTCAGGAACCTCGAGAGTATTTAAACCTATTTTAAATTACTATTTCAAATAGTAAAAGGAGGTTAATGCTAAACTATGTT TCAGATGACTTGGCATGCTTATGTACTGGATGCACTAGTTCTATTTCTAACTTATTTTTGTATCTTTTTGCAGTTTGGCA AATGGAATAAACAATGCAAGAGTTGTTGATCAGTTTTTTGATAAATCCAACTGGTGTATTATTCTAGAGAAGACATGATA TGATGGCCAAGAAAGAAACCTAGCTGATATTTGGGGGGGGGGAACTTGTCTGCTTCCTTTTTAAGACATCTGTCCAACTA GTCAACCTCGAGTGGGTATAGAATTACTGCAACCTTTATAGCATTTTCCTGCAACTAATCTTCATTTGGCTTCTAACTTC TTGCTATCAACAAAAAAAAAAAAAATAGACAGCTACAGAACTTGGACAGTGATGATTCTCTAAGAATTTCATTATCCAAA TCAGGCTGCCTTCTTCAAGCATACCCAGGTTATTGTGTTTATTGTTCTTTCTTTTTGATTTGCAAAATCCAATTTTGGTT AAAAGAATGTAGAGCAGGAAGGACATCACTGTTATGTGTATGATGGTGTTGTTGCTGGGCACTGTTTCTGCCCAGACAAT GCTGAACATCTTTTAGCCACTTTCACAACAGCAGTTACATTGGTTTCATGTACTGGACAGATTATTTGCTGGTAAGCATT GCGTTTGATCAATGGTTGTTTTAGATAGACATATGAGTTGTATTTTTTATCACTACTTGAAAGTTGGTATCTAGTTGTAA ATTAGCCCACCTAATTAGCTTTGAAAACAAAACTGGTTGATGGGATGGTTTGCTATTTCAAAAAAAAAATGATGACTTGC ATCTGCAAACATGCTAGGAGAGAGAATGCATGAAATGCTTAAGACAAGTCATGCCCTTTTTCAAATTGTTTATCATTTGG AAAGAGATTGATATGACGTTGCGTTTCAGATGTGTCAAGAGAAAAGATTTCTGGACGATGGTTGTGAACATTTGAACTTC GCACAGACATGAGGCGGACGTTACCTCTAGTGGACGATGGATTTAGAGGATAATGAACGATGAAGGAGTAAACTATGTAT GTTCCTTCTTTCCTACTTAAGAAGTTAGTATAAAGTTGTTCTTGAATGTACAATAGTAATGGTGATAGGCCCCAAAACCC TAGCGGAAGTAGAGTATGGTAATAACCTAGCCGTTTTGTAATAAATGCCCAAAAGTCCCTTTTTAAGGTACAAGTGTTCC CTTTTATAGGGGAGTACATAGAAACCCCAGGAAATTAACTAACTGGGCTACTTGGGCCTCACTACTCTCGGCCTAGTAAC CTTACACTCATTTACCCGCCATGTGGAGGTCATTCCCTATTCTTGAGTGCCCTTCACCGCTTGTCGCTCTTGCTCGCCTG TTGCTTGGGGGTTTGAGTCGCCCTTGGACGGCAAGGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0248000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCATGCTCATAGTGCTCTAAAACTAACATCAAGTAGATTCTTCTACAACCCTAGGGGAGTTCTCGGTTTACTCAC TGCTATTGGTGGTTGTGTCTGTCATTCAGGATTTTGTTCAATGACACAAATCAATTCTGAAGTGGGTTCTAGTTTATGTA GTATTCTTGCCCCAAATGGGGAACCCTGCATCACAGATTCCTCATCAGTAGTTGAGAACCCTACCACTTCGTCGGTGAGC GTGCGGTCTACCCCTGAAATTGAAAAGAAGTTTGTTCATCATGTTTATGATGCTATTGCGCCGCATTTCAGTTCCACTCG GTTTGCCAAGTGGCCAAAGGTTGCCTCTTTTTTGTCATCTTTGCCTTCAGGATCTCTTGTCCTGGATGCGGGATGCGGGA ATGGGAAGTACTTGGGTTTAAATCAAGATTGTTTTTTTATTGGATGTGATATAAGTCCTTCGTTGATTAAAATATGCTCA GATAGAGGACATGAAGTTATGGTTGCAGATGCAGTGAATCTTCCTTACAGAACTGGTTTTGGTGATGCGGCAATATCTAT AGCTGTGTTACATCATTTGAGCACTGAGAATCGAAGGAGAAAAGCAATAGAAGAGTTAGTCCGAGTTGTTAAAAAGGGTG GCCTTGTTCTTATTACAGTTTGGGCTGTAGAACAAGAGGATAAATTGCTGGTCACCAAATGGACTCCGCTTGCAGAAAAA AATCTTGAAGAGTGGCCAGAACCTGGAAATCATTGTGCTCGGGTTCCTTCATTTTCATCATTGGAAAGTATTCCAGAAAG TGAGGAGAGTAGCTCGGTTGAGCACGTTAAAGTTTGCAATGAGTCAAAATCATCAAGTGATTTGAATGAAGAAAAAAAAT TGAAGAATCAACAGGAGTATTTTGTTCCTTGGCATTTACCTTATCATCGTGCAGAAATCAGTGGTTCTTCTGCAGATGCT CTTGCTACTGGTCTTGCAACTAAAGATGACAAAAAGGGGGCTGTAGTGTACAATAGATATTATCATGTTTTTAGTCAAGG CGAGCTTGAAAGTTTGGCAAATGGAATAAACAATGCAAGAGTTGTTGATCAGTTTTTTGATAAATCCAACTGGTGTATTA TTCTAGAGAAGACATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0248000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVHAHSALKLTSSRFFYNPRGVLGLLTAIGGCVCHSGFCSMTQINSEVGSSLCSILAPNGEPCITDSSSVVENPTTSSVS VRSTPEIEKKFVHHVYDAIAPHFSSTRFAKWPKVASFLSSLPSGSLVLDAGCGNGKYLGLNQDCFFIGCDISPSLIKICS DRGHEVMVADAVNLPYRTGFGDAAISIAVLHHLSTENRRRKAIEELVRVVKKGGLVLITVWAVEQEDKLLVTKWTPLAEK NLEEWPEPGNHCARVPSFSSLESIPESEESSSVEHVKVCNESKSSSDLNEEKKLKNQQEYFVPWHLPYHRAEISGSSADA LATGLATKDDKKGAVVYNRYYHVFSQGELESLANGINNARVVDQFFDKSNWCIILEKT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF53335
76 245 170 1.03E-27
IPR029063
PANTHER
PTHR13069
84 377 294 1.6E-104 –
PANTHER
PTHR13069:SF21
84 377 294 1.6E-104
IPR032873
CDD
cd02440
127 223 97 4.16558E-10 –
Pfam
PF08241
128 218 91 7.7E-15
IPR013216

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0016300
Molecular function TRNA (uracil) methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a uracil residue in a tRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0248000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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