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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0249200 |
| Transcript ID | LotjaGi1g1v0249200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GrpE protein homolog; TAIR: AT1G36390.1 Co-chaperone GrpE family protein; Swiss-Prot: sp|Q7UA77|GRPE_SYNPX Protein GrpE; TrEMBL-Plants: tr|I3RZM9|I3RZM9_LOTJA GrpE protein homolog; Found in the gene: LotjaGi1g1v0249200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59914440..59920068) extracted from Lotus japonicus Gifu genome v1.2.
CCGAAATAGTGGTTTGTGCTCACGCGACCAACATTCATAACACACACTCGCTCCCTCTCTATTGGTGTTTACTTCCAAAT CCAAGAGCAAACAATGGCTGGTTTTCTCTGCAACCAACCTGTGTTGGGTTCTTGTCCTTGTTCTACTTCATTCTCTTCAA AACCCTTTCAATCTCCACATCCCCAAATCGTTCGTTTTCCACCTCGCTCCTCCAACCTTGCTACAATCTTAGGGTTTCCA ACCCCCCTTTCCTTTCGCAATCAAAGAACCCTCTTCAAGTCCTTTGTAGCTTCCCATGATTCGCTTTCATCTGTACGCTC TCTCTCTCTCTCTCTATCTTTCTTTTGCTTCCTGAATTTGTTGTTTTTATCATGTAATTTTTGCTCTTGATGCTGTTAAA CCAACCAGTCTAATTGTCATCAATTTTTTTTATGCAAGAATTTATCTTGATTACCTAGTGTATGTTTGTATTTCGGACTG TTTATGTTGCACTCAACCGGTATCCAAACACTGAAACACACATGTATGATTATATTTATTTCTCATAATTCGGTTTATGA TTGAGCTCAATGGCGTAGTGTGATCCATATAGCCGACCTCACTTAGTGGGATAAAGCTTTTGTTATTGTTGTATGATTCC TCTTAGATCTTAGTTGTGCGGAGTTGTAATTTTCCAGCAGTGAGGAGGGTCTCAAGGGCCTCATGTCATTTTTAATAGGA AGTAGTCAACGATGAAGATGAAGAGTGTGTGTGATGGACTACTTTCCTTGCTATCCTGTTATATAGTTGATATTAAAATG TTAGTATTAGTTTTTTGCCTTTTATGTTACTGGTAAGTGATATCATAGTAGCATTAGGTAAACAAGTTTGGAGTATACAG ATTGATATGCTATTGCCCGGTTAATTTTATTTTGCATCTCTTGTTCTTATATGTTGTTAAAATGGCTAATTCTCAATTTC TCATAAAGTTTGTTTGCTTTGAAGTGGAAGGGGTTATCTTTGTTTCAGTAGTTCTGGAATTATATCCCTAGCTAAATCCT CTCTCTGTCTTGTCTTCCATAGACATGTGATGAAACAGGGGAGACTCAGAATGATGTAAGAGTGGCAAACGATGATGAAG ATAAAAAACCTCTACCCAGCTTAATGGTCCTCATTGAAGCATACAAGGATGCCATTCTTAGTGGTGATGAAGTAACCGTA TCTCAGATTGAAGAGAGATTACATTTAGTGGCAAATGAAAAAAATAAGCTGGCTCAGGAATTATCGACTTTATCGGCTAA TCAAGTTTCTTCTAAGGAGAAATACCTTCGCTTACAAGCAGATTTTGATAATTTTAGGAAAAGATATGACAAAGAAAAAC TTAACATCCAAGCTGATGCACAGAAAGAATTCATTGAAAAACTTCTGTTGATGGTGGACAATTTTGAGCGAGCCAAACAA CAAATTAAAGCACATACCGAGAAAGAGAAGAAGATTGATGTTAGCTATCAAGGTATTTACAGGCAATTTGTAGAAGTTTT GAGGAGCCATCAAGTTTCTGTCGTAGCAACAGTTGGAAAGCCTTTTAATCCATTGGTAAGTTAAATTTTGAAACACTTAT CCTTTTCTTGTATGAGGAATATCTTCCTTATTTTTATTTGGTATTGGTAGTTGAAACAATTTCACACAGAGAGGATGCCT TGGCATTCATTTTTGCTGTGTATGTCAGACAATCATTCCCCCATCCACCAATAAAAGAAAAAGAAAGGACAAGAACTTTA CATCCTGGATCTGGTGCATTAATATAAGTTTGTTCCTTGTTATCTGTTTTTCAGGAAGTTAGAGATCTAGTTAATATGTA GTATGTGTGCGTGTGTGTGTTATATCATTAGTGGCATAATTTGGAGTAGTATTTTGTTTGTTAGGTTAGCCTTTGGTTCA TAAGTTGCTTTTGAGGGAGATAATATTCAAGTATTGCTATCTTTAAATATCATCAGTTACTTCCTTGTAGTTATGGATTT ATGATTGAAATTTGTTAGGCCAGATAATTTATTTGATCGTACTGGCAACATATTTAAGAAATTAAGCATTTTTGCAAGAA TTGGCTTGGGAAGAACCAAATCAATCTTTTGTTAAGTACTAAATTTTTACAGGTAATGTGAGTGGGGTATTCTTTTTCAG GTATTGTTAGTGAAAATAATCCTTTTGTTGAACTACCAAAAGGTGTGTTTTAATTTTATGAAATAAAGAGGAACTTTTAA CAATATGTTATATCGTATGTCTAATGCCTTGAGACTGCAGACCTAAATTCACGAATTAGAGTCTCATTTTTTTTTTTTCA AATGACTAATGTGATACTTGGTTGTGCAACTCCGTTACCAAGATTTCATTTCCTTATTGTACTCTTCGGTAAGGGATCAA AACATGGGCTTCAAATATGCTATTTGTTTCTCTAAAGAGGGAAAATGTTATGTTGTTCATAGTTTTGCCTCTTTTAATTG TCACCATGCTGCTCCTGTTGCTCGTCTTACGAGGGCCTTCATCGAAAAGTCATGCTTGAAACTAAAGCATGGCATTTTCC CTACATATAGAAGGCAATATTTGATGAAGACAGGTAGACAAGTTATCCACCTGGCCATTGTTTAATTTGTTTCTGAATTA CTTCTGCTGCAGCTTCATGAAGCCATTGCACGCGAGGAGTCCGCAGAGTTCAAGGAAGGGATTATAATCAAAGAACGCCG ACGTGGTTTCTTACTCAAAGATCAGGTTCTAAGGCCAGCACAAGTTAAGGTTTCCTCAGGTCCTGGCAACAAGAAATCTC CAGTGGCTCCTGCCAAGTCCATGGAGCAGCCTTCAACAGCTGCTGGAATAGATGAAAGATGATAGTCTCTTGAACTTTCT CACTTATTCATTGAAAGCCTAGTTTGACCTGCGTACCTGATATACTCATTCTTCAACTTGAAGCATTTCTAGTGTTCCAT CGGTGTTTTCAGCCCAAGGTGAGTGTAATCCATCCCTTGCAGTAGGACCTTAGAAGCTGTAACTTGTGTCCAACTGCATC ATTTAAAAAGGGAATTCATATTTATCACAAGAAAATGATAAGTTTATTGTGGATTCCATTTTTACCATGTCACAAATGGT TTTTTCTTTTTGAAAATTTCTTTTAAGTATTTCCTCTCATCTGGGTGCAGAGTCTTACACCTTTGACAAAGGCTAGCATG AGAGAAACCTATCCTATTGAAATACCTCAATTTTTCATGTTAGCAACCAAAAAGCAACTGCAATAAGAGTTTTAAAAAAA ATGTGGAGTGCATGTTTTTGTCTGATAACTATATTCAAATAAGTAGACCATTAATTTTGTCTCTAGCATTTACTACGTAC ACTAACCTAAGGAAAACTACAAATAAATCAACATTGTATGATCCCATCGTGCATGTTAGTCGTTGCTATCACCTCTCTTC CGTTTTCTTTAACAGGATGGACATTTATGTATGTATCCTTCTGGCCTTATTAATGAAGCTGAGATATCATTTTATCTATC ACACATATCCTCCACGGGAGCCAACTATGTTCCAGCTTGGACATGCACATTTATGTGGGACTTTTTTTAATACACTAGAC TTAAACTCGATGCATTTCTTAAAGAGAATCAAACATGTATCAATCAAACTAACAATACGTGTTGAGAGACTATTGATAGG TGGGAAACCATAATGAGCGAGTCATTGTGGCTGGGATTAATCTCGCCATATTCTTCAGATAAGAAAGTGATAGGCAATAG GCAGACTCTTCACACGTGTGGTTCTCTAGTTTATACATATGCCTTGTCGAAATCACACATAATTCTATTACAAATGACAA AAATTAAAAATCTAAGCATATATAAACGAATAGAATACAAAAATTGGATAGAAAGTAGATTTGTGGAGAAAGTGATGTGC AGGACTATATATATATAGGTTACTGATGGCCAAAAGCCCAAAACCATTGGTAATGTCGTCCGTAAGCTATAAATGTACCG ATGATATTAACGTGTCATTAATGTTTTGGTTGATCGGGTTATTGACAACCTTCACCGTCAGAAAGTGACCGGTTTTTGCG GCTAAATTGGCTAGTGACTTTACCGACGACCTTGTCTTTCGATAAAGTTTCCCTTCAATTTTTGGTGTCACATACCAATA GCTTAGTTCGTCAGTAATGTTTCCCGCCAAATCTTCCTACAACAAGGTGCTATGTATTGACGATCTAAAGTGTAGGTAAA AAATATTTATTCTCAAAAGAAAAGGCGGTTCAGTGCGGTTCTGATGACTGAACCGTCAATTATCGACAATCTTTGACTAT CACTAATTGACCGTACAATAAATGACAAGTTTCTTGTAGTGATTCCTTTGTAAAGTAAAAGGTTGTGTCAGAAACATGGA CAAAAGAACAATGATTTAAAGGAAAAAAATGCTTACATATGCTAAATTGCACACCGCATATTCATTGCATTAAATGCTTA CAACGTACACATCCAACCATTATCTATGCGAAATGAAAATCCAATGGATATAAAATAAAAGCATTTCAGAAGAAAGAAGA AAGCATGAGAACATATTTACGAGATATTCGAGGAGTGAATCACCATTTTGGTCCCTGAGATTGTAAGCGTCGATCATATT AGTCCCTGGATTTCATTAATGGTGAAAAAAATCCCTGAGTTTATTTCCGTCGGTCATAGTAGTCCCTAACCATGTTGGGC CGTTAGTTCCTGGGATGGAACCAACGTTAAGTGACACATAGACTCAGCCACGTAGGACAAAGTTAGGAGGGGATTAAATC GATCATTTTAGTCCCTTCGAATTGGGTTTAAAATTCCCAAATCAATGAACCCTAGAACCATATCCAAATCCCCAAATCCT CTGAATCTCCAAAATTCCTTCTCGATTTCTCTCCAAACTGCAATTCCTGTGCTCTTTATTGTTGAATCGAACATGACAAT GGGTGAGGGTTTCAAAGGCCGCGTTCAACAGAGGTCAAGCACGAACGGAAATGGTGGCGGTAGCTCATCTGTTAACGGCG GAAACCCTCGATACAAATGCGGTGAAGAGGCAAAGGTGAGGGTGTCGAGGACATACGCGAACCCAGGGAAAGCTTTTTAT TGTTGCTATCTACCCAAGGTATGGTCTTCTTCCTCATTTTCATCATCCTCTGTTCTCATCCCTCTTTTTCTGAAGTTCAC ATGTCACAGGGCCATGAGTCAAACTGCAATTTTTTCGCTGGGTAGATGATGTAGCGGACACAGATGAATCCAGTGGTCTG GGTATGAAGGCTGAAGACTCTATGCTATTGAAGGAGCCTGTGGTCAAGAATGATGCTATGCTTGAGGAGCTCTCAATGAT GAAGGAAGTTATGCTGAAAAATGAATGTCTGATTGAGGAGTTGAGAACGATAAAGGGAGTTCTGGAGAAGAATGTTGGCT TGGTTGAGGAGTAGAACAAGTTTAAGAATGTAGAACTTAGGATGCTTAGAGGTCTTGTTTGTGTATTGGTTATGTTTATG GTAATTGGAATGTCTTTTGTTGTTATAAGGGGGATATAAGGGACATGGTTATGTTTGTATTGGTTGAAATATGTTTGTAA GCTGACCTGATGCAATCAATCAATATATG
CDS sequence (LotjaGi1g1v0249200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTTTTCTCTGCAACCAACCTGTGTTGGGTTCTTGTCCTTGTTCTACTTCATTCTCTTCAAAACCCTTTCAATC TCCACATCCCCAAATCGTTCGTTTTCCACCTCGCTCCTCCAACCTTGCTACAATCTTAGGGTTTCCAACCCCCCTTTCCT TTCGCAATCAAAGAACCCTCTTCAAGTCCTTTGTAGCTTCCCATGATTCGCTTTCATCTACATGTGATGAAACAGGGGAG ACTCAGAATGATGTAAGAGTGGCAAACGATGATGAAGATAAAAAACCTCTACCCAGCTTAATGGTCCTCATTGAAGCATA CAAGGATGCCATTCTTAGTGGTGATGAAGTAACCGTATCTCAGATTGAAGAGAGATTACATTTAGTGGCAAATGAAAAAA ATAAGCTGGCTCAGGAATTATCGACTTTATCGGCTAATCAAGTTTCTTCTAAGGAGAAATACCTTCGCTTACAAGCAGAT TTTGATAATTTTAGGAAAAGATATGACAAAGAAAAACTTAACATCCAAGCTGATGCACAGAAAGAATTCATTGAAAAACT TCTGTTGATGGTGGACAATTTTGAGCGAGCCAAACAACAAATTAAAGCACATACCGAGAAAGAGAAGAAGATTGATGTTA GCTATCAAGGTATTTACAGGCAATTTGTAGAAGTTTTGAGGAGCCATCAAGTTTCTGTCGTAGCAACAGTTGGAAAGCCT TTTAATCCATTGCTTCATGAAGCCATTGCACGCGAGGAGTCCGCAGAGTTCAAGGAAGGGATTATAATCAAAGAACGCCG ACGTGGTTTCTTACTCAAAGATCAGGTTCTAAGGCCAGCACAAGTTAAGGTTTCCTCAGGTCCTGGCAACAAGAAATCTC CAGTGGCTCCTGCCAAGTCCATGGAGCAGCCTTCAACAGCTGCTGGAATAGATGAAAGATGA
Protein sequence (LotjaGi1g1v0249200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGFLCNQPVLGSCPCSTSFSSKPFQSPHPQIVRFPPRSSNLATILGFPTPLSFRNQRTLFKSFVASHDSLSSTCDETGE TQNDVRVANDDEDKKPLPSLMVLIEAYKDAILSGDEVTVSQIEERLHLVANEKNKLAQELSTLSANQVSSKEKYLRLQAD FDNFRKRYDKEKLNIQADAQKEFIEKLLLMVDNFERAKQQIKAHTEKEKKIDVSYQGIYRQFVEVLRSHQVSVVATVGKP FNPLLHEAIAREESAEFKEGIIIKERRRGFLLKDQVLRPAQVKVSSGPGNKKSPVAPAKSMEQPSTAAGIDER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 298 | 286 | 7.0E-111 | – | |
| PANTHER | 13 | 298 | 286 | 7.0E-111 | ||
| Hamap | 76 | 286 | 211 | 16.572 | ||
| Gene3D | 115 | 228 | 114 | 2.2E-21 | ||
| Coils | 119 | 139 | 21 | - | – | |
| Pfam | 129 | 285 | 157 | 2.1E-40 | ||
| SUPERFAMILY | 134 | 229 | 96 | 9.55E-19 | ||
| CDD | 151 | 284 | 134 | 3.42556E-44 | ||
| PRINTS | 155 | 171 | 17 | 3.3E-21 | ||
| PRINTS | 183 | 198 | 16 | 3.3E-21 | ||
| Gene3D | 230 | 286 | 57 | 1.4E-16 | ||
| SUPERFAMILY | 232 | 287 | 56 | 3.92E-14 | ||
| PRINTS | 238 | 253 | 16 | 3.3E-21 | ||
| ProSitePatterns | 241 | 284 | 44 | - | ||
| PRINTS | 265 | 284 | 20 | 3.3E-21 | ||
| MobiDBLite | 280 | 313 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Adenyl-nucleotide exchange factor activity | Stimulates the hydrolysis and exchange of adenyl nucleotides by other proteins. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Protein homodimerization activity | Interacting selectively and non-covalently with an identical protein to form a homodimer. | ||
| Molecular function | Chaperone binding | Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. |
Expression pattern of LotjaGi1g1v0249200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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