Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0249300 |
| Transcript ID | LotjaGi1g1v0249300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT1G77850.1 auxin response factor 17; Swiss-Prot: sp|Q84WU6|ARFQ_ARATH Auxin response factor 17; TrEMBL-Plants: tr|G7J463|G7J463_MEDTR Auxin response factor; Found in the gene: LotjaGi1g1v0249300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59966666..59973031) extracted from Lotus japonicus Gifu genome v1.2.
AGTGACATGAAAATAAATTTTGAAACGCACACAACCCAACACGACGTGTCCATTACAGTCTTGTGTCTTTGATAAACGCA CCATATATTACAGATAGAGATAAAGTGAAGAATGCATTGATTAAAGAAAGAAGAAGATTTAATTCTATCTCTTGACAATA GCCATAATAATAACAGAACGAACGATCGATCTTTTTGATAGTGGTTTTTAAAACAGAATTGGTCTCGGTTCAGCGATGAG AGAGAGAAAGGAAAAAGGGTAATGTGAAATAAATACGTGGAGATTCCAATTCCAATGTAGTTAAATCGTCAAGGACATGA CCGTCATTTCAACCAAGGTTTTGATTATTCCCTAATTCTCAGACCTCTTTCTCTCTCTCTCGCTTCCAGCGGACACACCC AACAAACTTTTAGAGAGAGAAAGTAGAGAGAGAGTGAGTGCTCTCAACAAACTCACACTCACTCTCACACACTCACTCAA ATCACTCTATCGATTCCGTTACTTGTTATTATATATGTTTGAAAACCAAAACCCTAAACCATTCATTCATTCACACTCTC TCGTAACGATTTCAGAATCGTGTGAAGCAAGATTCATTCATTCAATCATGCCTCGCCAACTGCCGCCACCGCCTCCGGTT CCCAACCGCCGTCTCGACCCCAAAATCTGGCGAGCATGTGCCGGCGCCGCCGTCCAGATTCCAACTCTCAATTCTAGGGT TTACTACTTCCCGCAGGGGCACATGGACCAGGCTTCGTCACCTCCTCAGCACCTTTCTCATCGCTTGGTTTCCCGGCCGA TGATTCTCTGCCGCGTCACCGCCGTGCAGTTTCTCGCCGATCATCTCACGGATGAGGTTTTCGCGAAGCTTGTTCTGCAT CCGGTTACGGAGTCGCCGCAGCGGTTTCCGCTGCCGAGTGAGGATGACGGCGGTGAGAAGGTTGTGTCGTTTGCGAAGAT TTTGACTCCGTCGGATGCTAACAACGGCGGTGGCTTCTCTGTGCCGAGGTTCTGCGCTGATTCAATCTTCCCGGCGCTTG ACTACCAGGCGGACCCGCCGGTGCAGAATCTGATTATCACTGATGTTCACGGCGTGGCGTGGGAGTTTCGGCACATTTAC CGCGGGACTCCGAGGCGGCACCTGCTTACTACCGGGTGGAGCAAGTTCGTTAACAGCAAGAAGCTCGTCGCCGGCGACTC TGTCGTGTTCATGAAGAACCCCAGGGGGGAGATGTTTGTTGGACTCCGCCGCGCCTCTCGGTTTGCCGGCGGCGGCGACG GGGCCAGGCGGAGTTTTCCGATCGGCGTGGTGAGGAGCAGGGTGGAGGAGGAGGAACCGCCGCAGGAGGAGAGGAGCAAG GAGGGATTCTCGAGGAACGGGAAGGGGAAGCTGTCGCCGAAGTCGGTTGCGGAGGCGATGGAGTTGGCTGCACAGGATAT GCCGTTCGAGGTGGTGTATTATCCGAAGGCTGGGTGGTCCGATTTTGTGGTGAAGGCGGAGGCTGTGGAGGAAGCGATTC GTGTTAGGTGGAGCCCTGGGATGAGGGTGAAAATGGCTGTGGAGACTGATGATTCGTCCAGGTTGACCTGGTTTCAGGGA ATGGTCTCTTCGGTCAGTTTTTCTGATAATGCCCCTTGGCCACGCTCCCCTTGGCGTATGCTTCAGGTATTCTTATGCTT CATCATCTCTAGTTCTCTACGGTTTGCGTTATGTTAATGATTTGGGCATATTATGAGTTTGCTTGTTTGTACAAATTTTA CTTCTGATTTCTGATATGGAAGTTTTATAATGAACGGCGAGATTCAAAATCAGAGGTGATAAAATTGTGTCAGCAATGAC GCTGAGTTTTGAGTCAAACTGCAAAGTATTCAATAGATTGGAAAATGTTTTGGCAGGAGCAGGAAATGCTTATTGGTCTA TTAGGGTGTCTCAATAGTCAATATATCCTCTCATTTTCACGAGGATTATGTTTCCCATCAACCCATCAACACCATATTAA ACATGGGTACCTGCAATTCATAAAAAAACAGAACTAATGCTGAAAGCGCTAGACCTAGTCTGATAGAGCCAAATGGCATC ATTTTTTCCATGTAGGTGGTCCCACCTAATGGGATAAGGCTCAGTTGTTGTTGTTCTGTACTTCTGGGGTGAAATTTATA TTCAATTACTAATTTTATTTCATAATGAAAACTGGGAATGATTTTGTGGCTTGTGATTCCATTTAATGTGGCATTCAAGA TGATGGAGTGTGGGGAACCAAATATATTTCACCCTATTTGCTGAAGAAATATAAGAATCAAAGAGTGGCTTGTGTTTTTG AGTATAAAAATTTTGTAGAAGGGTTAAGTTAGATTATACTTAGCATTTTAGCCAATATAATTGCATGGAGGGATTATACT GAGTAAATACCAGTAAGGTAACAATGATTAACCTCTGTTTAAGGGTAATATGTTGTTCCAGAAGGGGTTAAGGGATTATT TTGTTGTATAGTTGTTTCTGTTATGCCTCTCGAATTTCTGCATTTTTATTCTAGTCTACTCGGTTTAATTCATCAGACTG CTGTGGATTAGAAGTAATTCAGGATTGGTAAAATTTTATCAAACCAATGGATACTGTTTTCAGGACATATGAAGTAGCTA CAACAAAACTCTGTCTGTTTCGCTTCCTTTTTTTTTTTGCAAATTCTGGTTGCAAAGCTTTTCTTTTATTTATTTATTTT TACTATTTTGACTTTTGTGACATTTCTTTTGTTTTGGATAATCATCTTTGGCAAAACAAATTTCTCTAATTTTGCAGCAT ACTGTATCAAACTTGGTCACTGCCAAAATGTCTTTTGTCACTATATTTGGAGTACTAATTGCACTTCTATTCTCTGCAAC TTATTTCATGCATTTTTTGGAGAGTTTAGAGATGCAGCTTTCCTTTAGACATGGCTCTCCATGAACAATCAAGAAAATTC GACTTCGAAGAGAAATGACGAGTGACAAATATTACTACTTCCCTATCACTTTAAAATTTAGATGTCACTGAAATTTGGGT TACCACTTTTGAGACAAGGTTAACCTTGCAGTTCATGTGCTGTCACAAAGGGCCATGGCACAATTGTTTTGATATACATT ATAATGTTGGGGTTCAACAGTTTCTACAGTTTTTAGGTCTAAGTAGGATGAAATGAATAGAGGGGGTGGAGATTTCTGCT CTTATTTGAATGTATTAAAGAGAAGAAAGCAAAAGAGGATAAATAGGGCCCTTAGTGTTATTGAACTTGTCTTAAACCTA TTGAACCGATTGATCTAAAAGGAAAGCCTCCATACAGTGCTTGATGCTATGCATCCTATTAATCTGACCAACCCAAGGTC TTTGTCCTTTTATGGCCACATCCCACCCTCCAGTGATTTTATGGCCACAACCTGGTGTTTTCCAGTCACCAATTACTCTG CTTTCCCTTTTATCTCACTTTCCCCACATGTTTCTCTTGTTCTCTCCCTGTCCTGTTCTTTTATTCTCTTTCTCTATGTT TTGAGCTATTTTTTTTTTTTTTTAATTTTATGTTGAGCATTTGTACTTCATTAGTATAAAGTATTCGATCTGTATGGCAA ACTTTAGAATAGAGCTATCTTGCTACGCTAGATTGGGGTCAGCCACTATTTACTGCTGTCCGGGGCTCATAAGTCATAAC GTTGATACACAATCTTCATTGCCGCCTTTATCAGTAGAAGAATTAACATATGTTTTTTTCTTGTGTTACTATATGTGAAT CTTGATTGTACTGTCCATGTGAATTTTTTAACCAGTTTTATTGGGAGTCTCTCTTGTAATGTGGCACTTATGTAGGGGAA ATTCTCAGAAAAATCTTTTGCTTGCCTTTAATTTATTATATTATTAGTCTTTGTATTATGACTTATGCTGCTGAAGTTGC ACTTTTTGAAGTTATCATCTTTCACAAATGACTGATATTGGCCATTTATCATTTCTGATATTTTCATCATAGATCACATG GGATGAACCTGAAGTGTTGCAGACTTCCAAGTGGGTCAGCCCTTGGCAGGTCGAACAGGTGTCTACCACACCTGGACTTC ATACTGTTTTCCCTCCAACAAAAAGGTTCAAAGCTGCTCAGGGTTCTGGGATGTTCGCTGATGGAGAGGGAGACCCCTTT TCTATGACAAGATTCACTAATTCAACAATGGGACACTTGAATCAAACATTGTTGAATTATGGTATTTTTCCTGCTGGCAT GCAGGGAGCCAGGCATGATCTATTTTCTTCATCAAGTTTTTCCAACTTTCCAAGTGACAACTCTCACTTGTATATGGGTA ATTCCTTTGGGAGCAACACAGTGCCCAGGTTGCATGCTTTGTCAACCGAGCTAAATGTCGGCAGCTCTCAATCTGGCGAC TTGTCACCAGATAGCCATAGTAGTCTGCATTCCTTGGGAACAGACTCTGTTAGGAACCAGAACAGCAACTCAGCTAAACC TGGGTCTTTTTCATTTCAGCTATTTGGTGCAATCATTCATACAAAACAGCCTGATGAAAGTGGTTCACAGGGTACTGGTT GTACAGGAGATGATAGCAGCAAGGGCAACGAAACTGAAGGCATTGACAACCCGCTGGATGATTCTTTGACTTACTCAAAA TTGCTTGACAGGCTTGATAGCCAATGCCAAAGAGCCTCGACTGTGGAGGCATGTTATTTGTGAAAGTAGTTATGACCATG TCGCATATAAGTAGCTGTACAGGTATGCTTATATCTGAGTGAATTGAATTCCTCTCTAGAAATGAATCGCATTATAAAAT CAGATATTGATGCTTTATTGATAAATTTTGTGCTGGAATTTTTACTGTAATGGCATTTATTGTGCTGTTTGATTGTTATG TAAATGTATGATGTGTTTTTAGGGACTGTTCTGATCAAGTGCAGGGTAAATTTGATTCTGAATATATTCTCAGAAGTGAT AATTGATAACATAAATTTAGTTTTTTGCCAATAAGCGCATTGTAGTTATAATGAATATCAATTATAATTTGTTATCCCTG GACTATCTTTAGTATACTCTTGATACTGGGGCCTTAAAAAAATTCTGACCGATTGTGCATGGCCAAAGCCAAAACGACAG ATTCATCTTCCTTATTTTGATTATAGTATCAAATCACATTTTACTTTGATAATGTTATTGAATCATGACTGGAGGTTAGT GATCAAATTTTTTGAGTATTCTGAACATGTTCATTGTCTTCCTTTTTGTTGACTAACTGATACGTATTAAGTTTCTAATC CAACAGAACTTGGCATTGTGTTGTCTAAATCAATTTTTAGAGTATAGCAGCTCATAACCAAAACTAGTATATCTATGGAA AGACCAACAGAGTCAGTGGACTACTGAAAGTTGTTTGTCTGAGTAGGATAACCCTTTTTGAAACTAGCATAGTGCAAGAT TGTTTATTTAGATAGCATGAAATTCAATGGCTAAAATTGGGAATCTGTTACTCTGGCCTCTTAAGTGAGTATATATTATT GAACAGCTTATAATGGTTTGCATGATTTGTTGTTTAAGTGCATCATTATGTGTTTAGGTGACTAAATTTCATGTTCAATT AACTTTCTGCTGAAGTTTCTTTGTTTGGCTTCCATGCAGGTTTTTCACGCAGACAGAAAGCTGACCACCCTTTTGACCTT GCAGTCTGCTTGTTTTCCCTTGTTGCTCTTGTTGAAACTTTGGAACAACAAAACTAACTTCGCTATATTTGGTCATGTGT ATCAATGTTAATATCTGAGGACCTTATAATATTGCCAAATGCAAGTTCTATTATCTCTTTCCCCCCTTAACCGTTAGATT AATTGGTCTTTATGGGGTATGTTAATTTGTGAGTACATGTTTATTATTCTGCGCCAACTTATTTTACTTCTAGTTAGAGG CTTAATCAACGCTAGTTTCTTATTTTGATGCATATTTTGCAGAGGTTAGGTAGGATTAAATTTGATGCATATTTTGCAGT CCAACGGTTCTATACAAGTTGTGATATCTTATGTTTGCTTATGCTGAATTGAGAGGTGTTAAGAGGAAATAGAAACATTT TACCAATTTGTACGAAGGAAACTAGAGGAGAAATAAGTTTTTCAGAGTTAAAACTTTCTAAGAATAATTTCTCTCATTGT AGATTTTTCTCCCCTCAATGTGGATATCTACCAGGTTACAAACAGATATTTAGTGTCCATTTCCATTGCAACTTTGGCAT TTCAGCATAATCTAATTTCGAAAGTGTAGTGCAAAACTCTATGATGTTCAATAAATTTTCATGGGTGTATCTACAGTTTT CTTTTCCATACATAATTCACATATATAATAATTTTGTCTAGCAAAC
CDS sequence (LotjaGi1g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGAAAACCAAAACCCTAAACCATTCATTCATTCACACTCTCTCGTAACGATTTCAGAATCGTGTGAAGCAAGATT CATTCATTCAATCATGCCTCGCCAACTGCCGCCACCGCCTCCGGTTCCCAACCGCCGTCTCGACCCCAAAATCTGGCGAG CATGTGCCGGCGCCGCCGTCCAGATTCCAACTCTCAATTCTAGGGTTTACTACTTCCCGCAGGGGCACATGGACCAGGCT TCGTCACCTCCTCAGCACCTTTCTCATCGCTTGGTTTCCCGGCCGATGATTCTCTGCCGCGTCACCGCCGTGCAGTTTCT CGCCGATCATCTCACGGATGAGGTTTTCGCGAAGCTTGTTCTGCATCCGGTTACGGAGTCGCCGCAGCGGTTTCCGCTGC CGAGTGAGGATGACGGCGGTGAGAAGGTTGTGTCGTTTGCGAAGATTTTGACTCCGTCGGATGCTAACAACGGCGGTGGC TTCTCTGTGCCGAGGTTCTGCGCTGATTCAATCTTCCCGGCGCTTGACTACCAGGCGGACCCGCCGGTGCAGAATCTGAT TATCACTGATGTTCACGGCGTGGCGTGGGAGTTTCGGCACATTTACCGCGGGACTCCGAGGCGGCACCTGCTTACTACCG GGTGGAGCAAGTTCGTTAACAGCAAGAAGCTCGTCGCCGGCGACTCTGTCGTGTTCATGAAGAACCCCAGGGGGGAGATG TTTGTTGGACTCCGCCGCGCCTCTCGGTTTGCCGGCGGCGGCGACGGGGCCAGGCGGAGTTTTCCGATCGGCGTGGTGAG GAGCAGGGTGGAGGAGGAGGAACCGCCGCAGGAGGAGAGGAGCAAGGAGGGATTCTCGAGGAACGGGAAGGGGAAGCTGT CGCCGAAGTCGGTTGCGGAGGCGATGGAGTTGGCTGCACAGGATATGCCGTTCGAGGTGGTGTATTATCCGAAGGCTGGG TGGTCCGATTTTGTGGTGAAGGCGGAGGCTGTGGAGGAAGCGATTCGTGTTAGGTGGAGCCCTGGGATGAGGGTGAAAAT GGCTGTGGAGACTGATGATTCGTCCAGGTTGACCTGGTTTCAGGGAATGGTCTCTTCGGTCAGTTTTTCTGATAATGCCC CTTGGCCACGCTCCCCTTGGCGTATGCTTCAGATCACATGGGATGAACCTGAAGTGTTGCAGACTTCCAAGTGGGTCAGC CCTTGGCAGGTCGAACAGGTGTCTACCACACCTGGACTTCATACTGTTTTCCCTCCAACAAAAAGGTTCAAAGCTGCTCA GGGTTCTGGGATGTTCGCTGATGGAGAGGGAGACCCCTTTTCTATGACAAGATTCACTAATTCAACAATGGGACACTTGA ATCAAACATTGTTGAATTATGGTATTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTTCATCAAGTTTT TCCAACTTTCCAAGTGACAACTCTCACTTGTATATGGGTAATTCCTTTGGGAGCAACACAGTGCCCAGGTTGCATGCTTT GTCAACCGAGCTAAATGTCGGCAGCTCTCAATCTGGCGACTTGTCACCAGATAGCCATAGTAGTCTGCATTCCTTGGGAA CAGACTCTGTTAGGAACCAGAACAGCAACTCAGCTAAACCTGGGTCTTTTTCATTTCAGCTATTTGGTGCAATCATTCAT ACAAAACAGCCTGATGAAAGTGGTTCACAGGGTACTGGTTGTACAGGAGATGATAGCAGCAAGGGCAACGAAACTGAAGG CATTGACAACCCGCTGGATGATTCTTTGACTTACTCAAAATTGCTTGACAGGCTTGATAGCCAATGCCAAAGAGCCTCGA CTGTGGAGGCATGTTATTTGTGA
Protein sequence (LotjaGi1g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFENQNPKPFIHSHSLVTISESCEARFIHSIMPRQLPPPPPVPNRRLDPKIWRACAGAAVQIPTLNSRVYYFPQGHMDQA SSPPQHLSHRLVSRPMILCRVTAVQFLADHLTDEVFAKLVLHPVTESPQRFPLPSEDDGGEKVVSFAKILTPSDANNGGG FSVPRFCADSIFPALDYQADPPVQNLIITDVHGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFMKNPRGEM FVGLRRASRFAGGGDGARRSFPIGVVRSRVEEEEPPQEERSKEGFSRNGKGKLSPKSVAEAMELAAQDMPFEVVYYPKAG WSDFVVKAEAVEEAIRVRWSPGMRVKMAVETDDSSRLTWFQGMVSSVSFSDNAPWPRSPWRMLQITWDEPEVLQTSKWVS PWQVEQVSTTPGLHTVFPPTKRFKAAQGSGMFADGEGDPFSMTRFTNSTMGHLNQTLLNYGIFPAGMQGARHDLFSSSSF SNFPSDNSHLYMGNSFGSNTVPRLHALSTELNVGSSQSGDLSPDSHSSLHSLGTDSVRNQNSNSAKPGSFSFQLFGAIIH TKQPDESGSQGTGCTGDDSSKGNETEGIDNPLDDSLTYSKLLDRLDSQCQRASTVEACYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 575 | 530 | 5.9E-170 | – | |
| PANTHER | 46 | 575 | 530 | 5.9E-170 | – | |
| SUPERFAMILY | 142 | 264 | 123 | 4.84E-29 | ||
| Gene3D | 143 | 248 | 106 | 2.9E-36 | ||
| CDD | 145 | 242 | 98 | 8.62135E-21 | ||
| Pfam | 146 | 247 | 102 | 5.3E-22 | ||
| ProSiteProfiles | 146 | 248 | 103 | 13.098 | ||
| SMART | 146 | 248 | 103 | 3.6E-18 | ||
| MobiDBLite | 267 | 294 | 28 | - | – | |
| MobiDBLite | 267 | 289 | 23 | - | – | |
| Pfam | 301 | 384 | 84 | 1.0E-28 | ||
| Gene3D | 338 | 412 | 75 | 4.5E-22 | – | |
| MobiDBLite | 512 | 544 | 33 | - | – | |
| MobiDBLite | 562 | 592 | 31 | - | – | |
| MobiDBLite | 563 | 581 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi1g1v0249300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…