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LotjaGi1g1v0250000.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0250000
Transcript ID	LotjaGi1g1v0250000.1
Lotus japonicus genome version	Gifu v1.2
Description	NAC domain-containing protein; TAIR: AT5G13180.1 NAC domain containing protein 83; Swiss-Prot: sp\|Q9FY93\|NAC83_ARATH NAC domain-containing protein 83; TrEMBL-Plants: tr\|A0A0L9U6B5\|A0A0L9U6B5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0250000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:60097392..60098497) extracted from Lotus japonicus Gifu genome v1.2.

GTTCAGACAAGCTAAGCCCTTCCTTCACTTGATCATATGACATCCTTTGAGATGCAAGAAGGCCTCATAACATATGACAT GGATGGAAGTGTTAAGTTGCTACCTGGATACACGTTTGATCCCACTGATGAGGTTCTTGTGAATTTCTACCTGAAGAGGA GGGTCTTTGCTCAACCTCTTCCTGTTCAAATAATACCAGATTTTGATGTGTTTCAGATTGAGCCTTGGGGGCTTCCTGGA AAAGGTTGGTGCAATTTTTTTTTCTAATTCTCTCTCCTTTCATTATTTCATGAACTCTTTAATCTTTTTTGTCCCTAGTG CTAACCCATAGAGCATTGGGTCTTGAAAGTTCTAATTTTTTCATTGTTCAATGAAATGTTTATGTATTGTTTTCAAGTGG GAATTTAACCAAATTGGTGTCTTGAATTTAATTTGGGGTTGCCTATGTTTTTAGATGGAAAGATTTTCAATAAGCGCACG TGCTTCTTCTATAACACCATGGGACGTGACCTTGGAGGCCTTGACATGAGAGCAGCTGGGAGTGGTCAGTGGAAGGTTTT GGAGAAAGCGAAAAATGTTCTCATCCCTCAAAACCATGAGGTGATTGGGAAGAGGAACACCCTAATTTTTTGGGAGGTGC AAGCAGCTTGTTATAAGAGGACTAAATGGGTGATGCATGAGTTCCGCCTTGTGTTAATAGCTAACCCATCTAAAGTAAAG AAATCATAGATCGAATAACGTGAGATAATGTATGGTTGGTAGAATATATATTATCATAATCTAAGCTTTTTCTTTTTTTT TTTATTTATCATTAGTATTATCTGATTACACAACTTTGTAACTCAATATGCAAATGGCAAATTGGATTGTGTACCACATA TTTCAGAAGAAGGATTCAAAGAATGCGAAGGAGGTAAGAGACTCTAATGTGGAGAGCTCCAACTGTGGAAAAAAGGTTGA AAGTTTTGAGGTCCTTGATTTCAAAAGGAAGAGTGGCGATTTCTTATACTCTACCTCAATGACCCTTCCTTAAGTGAGGG CAGTAAATCTGCTTGAAATTTGTGGAAAAAGTTGTAATATTCGGGGGGTGGGGGGCTCTCTTTGGG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0250000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACATCCTTTGAGATGCAAGAAGGCCTCATAACATATGACATGGATGGAAGTGTTAAGTTGCTACCTGGATACACGTT TGATCCCACTGATGAGGTTCTTGTGAATTTCTACCTGAAGAGGAGGGTCTTTGCTCAACCTCTTCCTGTTCAAATAATAC CAGATTTTGATGTGTTTCAGATTGAGCCTTGGGGGCTTCCTGGAAAAGATGGAAAGATTTTCAATAAGCGCACGTGCTTC TTCTATAACACCATGGGACGTGACCTTGGAGGCCTTGACATGAGAGCAGCTGGGAGTGGTCAGTGGAAGGTTTTGGAGAA AGCGAAAAATGTTCTCATCCCTCAAAACCATGAGGTGATTGGGAAGAGGAACACCCTAATTTTTTGGGAGGTGCAAGCAG CTTGTTATAAGAGGACTAAATGGGTGATGCATGAGTTCCGCCTTGTGTTAATAGCTAACCCATCTAAAGTAAAGAAATCA TAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0250000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSFEMQEGLITYDMDGSVKLLPGYTFDPTDEVLVNFYLKRRVFAQPLPVQIIPDFDVFQIEPWGLPGKDGKIFNKRTCF FYNTMGRDLGGLDMRAAGSGQWKVLEKAKNVLIPQNHEVIGKRNTLIFWEVQAACYKRTKWVMHEFRLVLIANPSKVKKS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	17	149	133	1.7E-32	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31989 View details on PTHR31989 Search for proteins/transripts with this domain View external data on PTHR31989	18	153	136	4.7E-39	–
PANTHER	PTHR31989:SF20 View details on PTHR31989:SF20 Search for proteins/transripts with this domain View external data on PTHR31989:SF20	18	153	136	4.7E-39	–
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	21	160	140	33.568	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	23	148	126	2.4E-20	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.310.150 View details on G3DSA:3.30.310.150 Search for proteins/transripts with this domain View external data on G3DSA:3.30.310.150	30	160	131	4.2E-27	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0250000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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