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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0254300 |
| Transcript ID | LotjaGi1g1v0254300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|A9ZM29|A9ZM29_SOYBN Oxysterol-binding protein; Found in the gene: LotjaGi1g1v0254300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:61225774..61230841) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATCCTTTCTGCTGCGTCTCCGCCATATCCGACCAGGCCTCTCCGGTGAAACCCTCACCCCCTCCGTTCCCTGACTT CTCCACCATGCCTCCTCCTCCTCCACCGCCTCCTCCCGCCGCTGCCGTCGCTGTCAGATCCGATTCGGCTCCACGCCTCA GCCACTGCCGCAGTCACAGCGCTACTCAGTCCGTGACCATCAGCGAGCCCGGTCGCGTGAGCCAGCGGGAGCAGCAGCCG GTGGTGGTGGACGTGAAGATCAACGACCTCGTCGGGAACGGAATCTCCGGGATACTTCACAAGTGGGTCAACTACGGCAA GGGATGGCGACCGCGCTGGTTCGTTCTCCAAGACGGTGTTCTCTCCTACTATAAGATTCACGGACCTGATAAGATCGTCG TGAATCCAGAAACCGAGAAAGGCTCCAAGGTTATCGGCGAAGAATCCATGCGGAGGATCACTCGCAACCGCAATTCTTCC TTTCCGTATCAACTCCGGCGAAAACCGTTTGGTGAAATCCATCTCAAGGTTTCTAAATTCTTGTCCAATTTTAGCTTAAT TGAATCAATCTCTTATTGACTTTTGTTTTCGTGTAGAATTGGAATTGGAATTTGAATTTGAATTTGAATTTGATTTGATT CGTGTGTGTAGGTTTCAACGATTCGCGAGAGCAAATCGGATGAGAAGCGGTTTTCGGTGTTCACCGGAACGAAGAGGCTC CATTTGCGGGCGGAGACGCGGGAGGATCGGGTGGCGTGGGTGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCTCGGAT TTCGAACAGTGAGTTGATGGCTCCGGTGGACAACGTGGCCATTTCAACTGAGAAGTTGAGACTTCGGCTTCTGGAAGAAG GGGTGAGTGATGCAGCCATTCAGGACAGTGAGCAAATAATGAGGACTGAGTTTGCGGCGTTACAGAACCAACTCGTGCTG CTTAAGCAGAAGCAGTCGATCCTAATTGACACCATGCGGAATTTAGAGGTACTTCTTCTGAGATTGTATATGACAAGTTT GCTTTTTACAGCTGAAAATCAAAATGTTAATGGCTTCTCTGTGGTTTTGGATAAAGATATGTTCACACTTTATTTCCTCT CACATGAAAAGTGATATAGGAATAGAAGAGAGAGAAATGATAGATATAATGTGTGATCTTACCGAAAAAAGAAGAGATAG ATAGAAAGAAAAGTGAGCGGTCAGAATGAATCAAAACTATCTCTGCTTTTAAATTTCATTTGAGAGAAGTGCAATTGTAA GTTGTAATAGTGACATTTAGTCAATCTCTCCCCTTTGTATTCTGTGCACACAATCCATTCTGTGGCTTGTTTTTGGATTA TCGGAATCTATGGTTAGCTTACTGATAAAAAAAACCTCAATACTGTTAAGGAGGAAGTTATGGGTTAATGGTTTGTTGTT GTGAAGTCTTTAAGCTTCTTTAGTCTTGTAACTTTTTGTTGAACTGTTCAACTGCACTTTGAGTACAGTTTCTCTTTTCC TGGCAGTCAATAATATGAAAATCTGGATATCGTTACTCATGGATGCATAATGTGAATAATAATAATGGTAATATTATTAT TATTATTAATTTGTTCCAATTAGACCCATTGAATCCTGCTTTGATGATAAGGTTGTGGCATTGATTTAATTTCACTGAAT TACCCAACAGTTTCGTGGTTTCCACCTTGTTTGCAAAATGTTTTCTTTTGTCTGTGGGCAGTTTTTATTTTTTTTCCACG ATGCTTTCTCTTGTGTTTAACGTATTAAGGATAAAGATTTGTTTTCTGTATTAATTAACTTGCATTTGTATTACATTATT GTAGACAGAAAAGGTTGATCTGGAGAATACAGTCGTTGATGAGAGCCAGAGACAGTTGAATGATCAAGAGGCTTCCTATG AATTAACACCAGAAAAATTTAGTGGTAAGCTTATTTAATTGTGATTATTAGGCATTAGTGCTCCCCATTCTCAACAGTAA GTCTTGTCTCTGGTTAGTTTTTATGGCCTTCTTCTATGTTGGCAAATGATTAAAACTTGATAGTGAGACATTTCTGCATT AGCAATAGAGGAGTAATGTAGACGTTTTATTGATCTCGTGATGCATTTTCTTGAACTTGAAGTATTTATGCTTCACTGTC TCAGATACACTGATCCCCCTTCCGTTCCAATGTTTTTTCCTTAACTCCTTACATCTCTCTTTCTCTACATGTTAAATTCA AATAGTTTGTAATGCTTACTACTCATTCCTACTAACCAATTGTTTTAATCTAGTTGTGATTTTCACAATTATTTATTTCA TTTAATTTCAGAAGGAAGCGGGAGTGAATCTGAGGACGATAATGAGAGAAATGATGCTGCAGATGACGAAACAGATGATG ACAATGTCTTCTTTGATACTCGTGATATTCTGTCAACCAGTTCTTTCAAAAGTAACGGGTCTGATCATAGAGTATCATCT TTCTCTTCAGATAATGAAGGGTTCTATGCATTTGAGTCCGAGGAGGATGTAGATCCTTCAATTAGAAATGTCGGAACCAA CCACCCTTATGTTAAGCGGCGTAGAAAATTGCCAGACCCAGTAGAGAAAGAGAAAGGTGTAAGTCTTTGGTCAATGATCA AGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCGTTGCAAAAGTGT TTTGAAGAATTGGAATATTCATATCTGCTGGACCAAGCATATGAATGGGGAAGAAGGGTAAGTGTGAATTTGGCTGATAG CTCTATAATAAGTGAAATCTGAGCGCTTTAATATAATAATTTCATTTGATATGAGAAAATTGTCGCACTATTGTTAACTG TTTGTGCTGTTGGCTCTTTCAATGCAGTCTTGAGTGTGTTCTTTCCATTTTTAACTAAATGGATATGCCATGCAGGGTAA TAGTCTCATGAGGATTCTCTACGTTGCTGCTTTTGCTATATCTGCTTATGCGTCGACAGAAGGAAGAGCTTGCAAACCAT TTAATCCATTACTTGGGGAAACATACGAGGCTAACTATCCAGATAAAGGCCTTCGATTTTTCTCAGAGAAGGTATATAAT CTCACCCTATAAGGATATTGTCAAAATATTACCTTTTTCAACCCAATCAAATCACAATAATATTTTCTTTCTGTTTTCAC CATAATTTATATATCTGTCAAAGGTTTCTTTCAAAATTCTAGCTTGGAGGAAAGTTATTTGAGTCATTTATCTGATGAAA ATTGTATGCAATATCATCAATACTCACACTTTTGAATTCCTTCCAAGCACTTGTTTTTGTTTGAAAGGAACAGCGTTCCT GATATGGAGAACCAAAACTTTAGAAACTACACAACTTATTTAATGAATAAAAGGTTTAATTGCTTGCATTAGTTCCATAC ATCCCTATGAACATAGTACAGTTTGGATTTGGATGCGAACAAGGACCTATCTATGTTGCCTATCTGAAATTTTTAATATT TCTGCTACCACTCAGGTCAGTCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGATGGAAATTTTGGGGCGA TAGCAACTTAAAGAGCAAGTTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTTTTTTGACTTTGGAATTTGATGATG GGGAAGTTTTCCAGTGGAGCAAGGTATATTTTAACTGCTTCAACTGCTATGTTGTTCTGGTTTGGTTTTAAACTGAAGTG GACTTGTTCTTTCAGGTCACTACGTCAATATACAATCTCATACTGGGAAAGCTTTACTGTGATCACTATGGTACGATGCG CATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAAGAACAATCTATAATTGATCGAAATCCTCATCAGGTGC TTTATATCTGTTGCTTGGGTTCTATTTTTTCAGATATAATATATGAATTTTGTTGCAGAGGTTTCTTCCTTCTTACTGTG GATTTAATTGCCCTTTTAGGTTCATGGTATCGTTGAAGATAGGAATGGAAAAACCGTATCAACTTTGTTTGGAAAATGGG ATGAAAGCATGCATTATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCCTGAATCTTTGTCAGATGCCCGTTTACTC TGGAAGCGAAGCAAGCCTCCCACATTTCCTACTAGATATAACTTCACTCGCTTTGCCATCACATTAAATGAACTTACCCC TGGATTGAAGGTCTGTTTTATTATTAACTGATACTGTCTTTTTTATTGCAGCTCTATTTCTCATTTTTTAAGGAAAGAAT ATTCCAGGAAAAGAATTGCATTTTCTACTGCAATTTGGGCTTACTTAAGCATGCTTTAAATGAAGTTGACTTGGTTCTAT TGATAATAAAGGAAAATGGAAATTGTGCAACATTGATGAAGCATAAAAATATTGATAATTTGACCATATCAAGAAAAGCC AAATTGTGCAACAAACCTGTCATCTTACTGTGCATATTATTTTCTGTGTGCACACATGGTGTTTGCTGTGTTTTTTGCAT TTTGCTGAACATTCATTACCAATTTAATTTGTGAATACACAGGAGAAGTTGCCACCTACAGATTCCAGGCTAAGACCAGA CCAAAGGTATTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAGTTGCGACTAGAGCAGCGGCAACGCCAGGTAC CTATTACATTTTATGTTCTCTAATTTTCTCTTTCATGGTTTCACCTTTAGCTCAGTACTTCAATAGACCTGAGAAGGTTT TATGCTAACTGGGTTTCATGTCATATCCTTATTTGCTAAGTTTAATTAGTTCCCGGTAGTGATTGATTTGAGTTCACTTC AGGCGCGAAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGTGAAGGATAAAGCGAGCGGGACATACCGCTATTTA GGAGGGTATTGGGAGGCCAGAGATGAAGGAAAATGGGATTCCTGTCCTGACATCTTCGGCCAAATCCCTTCGGATCATCT TCCCAACGAAGGTCAAATTACATCTTAG
CDS sequence (LotjaGi1g1v0254300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCCTTTCTGCTGCGTCTCCGCCATATCCGACCAGGCCTCTCCGGTGAAACCCTCACCCCCTCCGTTCCCTGACTT CTCCACCATGCCTCCTCCTCCTCCACCGCCTCCTCCCGCCGCTGCCGTCGCTGTCAGATCCGATTCGGCTCCACGCCTCA GCCACTGCCGCAGTCACAGCCAGCAGCCGGTGGTGGTGGACGTGAAGATCAACGACCTCGTCGGGAACGGAATCTCCGGG ATACTTCACAAGTGGGTCAACTACGGCAAGGGATGGCGACCGCGCTGGTTCGTTCTCCAAGACGGTGTTCTCTCCTACTA TAAGATTCACGGACCTGATAAGATCGTCGTGAATCCAGAAACCGAGAAAGGCTCCAAGGTTATCGGCGAAGAATCCATGC GGAGGATCACTCGCAACCGCAATTCTTCCTTTCCGTATCAACTCCGGCGAAAACCGTTTGGTGAAATCCATCTCAAGGTT TCAACGATTCGCGAGAGCAAATCGGATGAGAAGCGGTTTTCGGTGTTCACCGGAACGAAGAGGCTCCATTTGCGGGCGGA GACGCGGGAGGATCGGGTGGCGTGGGTGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCTCGGATTTCGAACAGTGAGT TGATGGCTCCGGTGGACAACGTGGCCATTTCAACTGAGAAGTTGAGACTTCGGCTTCTGGAAGAAGGGGTGAGTGATGCA GCCATTCAGGACAGTGAGCAAATAATGAGGACTGAGTTTGCGGCGTTACAGAACCAACTCGTGCTGCTTAAGCAGAAGCA GTCGATCCTAATTGACACCATGCGGAATTTAGAGACAGAAAAGGTTGATCTGGAGAATACAGTCGTTGATGAGAGCCAGA GACAGTTGAATGATCAAGAGGCTTCCTATGAATTAACACCAGAAAAATTTAGTGAAGGAAGCGGGAGTGAATCTGAGGAC GATAATGAGAGAAATGATGCTGCAGATGACGAAACAGATGATGACAATGTCTTCTTTGATACTCGTGATATTCTGTCAAC CAGTTCTTTCAAAAGTAACGGGTCTGATCATAGAGTATCATCTTTCTCTTCAGATAATGAAGGGTTCTATGCATTTGAGT CCGAGGAGGATGTAGATCCTTCAATTAGAAATGTCGGAACCAACCACCCTTATGTTAAGCGGCGTAGAAAATTGCCAGAC CCAGTAGAGAAAGAGAAAGGTGTAAGTCTTTGGTCAATGATCAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCT TCCTGTTTATTTTAATGAGCCTCTCTCCTCGTTGCAAAAGTGTTTTGAAGAATTGGAATATTCATATCTGCTGGACCAAG CATATGAATGGGGAAGAAGGGGTAATAGTCTCATGAGGATTCTCTACGTTGCTGCTTTTGCTATATCTGCTTATGCGTCG ACAGAAGGAAGAGCTTGCAAACCATTTAATCCATTACTTGGGGAAACATACGAGGCTAACTATCCAGATAAAGGCCTTCG ATTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGATGGAAATTTTGGGGCG ATAGCAACTTAAAGAGCAAGTTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTTTTTTGACTTTGGAATTTGATGAT GGGGAAGTTTTCCAGTGGAGCAAGGTCACTACGTCAATATACAATCTCATACTGGGAAAGCTTTACTGTGATCACTATGG TACGATGCGCATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAAGAACAATCTATAATTGATCGAAATCCTC ATCAGGTTCATGGTATCGTTGAAGATAGGAATGGAAAAACCGTATCAACTTTGTTTGGAAAATGGGATGAAAGCATGCAT TATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCCTGAATCTTTGTCAGATGCCCGTTTACTCTGGAAGCGAAGCAA GCCTCCCACATTTCCTACTAGATATAACTTCACTCGCTTTGCCATCACATTAAATGAACTTACCCCTGGATTGAAGGAGA AGTTGCCACCTACAGATTCCAGGCTAAGACCAGACCAAAGGTATTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAA AAGTTGCGACTAGAGCAGCGGCAACGCCAGGCGCGAAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGTGAAGGA TAAAGCGAGCGGGACATACCGCTATTTAGGAGGGTATTGGGAGGCCAGAGATGAAGGAAAATGGGATTCCTGTCCTGACA TCTTCGGCCAAATCCCTTCGGATCATCTTCCCAACGAAGGTCAAATTACATCTTAG
Protein sequence (LotjaGi1g1v0254300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHPFCCVSAISDQASPVKPSPPPFPDFSTMPPPPPPPPPAAAVAVRSDSAPRLSHCRSHSQQPVVVDVKINDLVGNGISG ILHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNPETEKGSKVIGEESMRRITRNRNSSFPYQLRRKPFGEIHLKV STIRESKSDEKRFSVFTGTKRLHLRAETREDRVAWVEALQAVKDMFPRISNSELMAPVDNVAISTEKLRLRLLEEGVSDA AIQDSEQIMRTEFAALQNQLVLLKQKQSILIDTMRNLETEKVDLENTVVDESQRQLNDQEASYELTPEKFSEGSGSESED DNERNDAADDETDDDNVFFDTRDILSTSSFKSNGSDHRVSSFSSDNEGFYAFESEEDVDPSIRNVGTNHPYVKRRRKLPD PVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEELEYSYLLDQAYEWGRRGNSLMRILYVAAFAISAYAS TEGRACKPFNPLLGETYEANYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGFLTLEFDD GEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRNPHQVHGIVEDRNGKTVSTLFGKWDESMH YVNGDYTGKGKGPESLSDARLLWKRSKPPTFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSE KLRLEQRQRQARKMQESGWKPRWFVKDKASGTYRYLGGYWEARDEGKWDSCPDIFGQIPSDHLPNEGQITS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 783 | 783 | 0.0 | ||
| PANTHER | 1 | 783 | 783 | 0.0 | – | |
| MobiDBLite | 13 | 41 | 29 | - | – | |
| MobiDBLite | 16 | 41 | 26 | - | – | |
| ProSiteProfiles | 75 | 204 | 130 | 13.233 | ||
| SMART | 76 | 206 | 131 | 1.0E-18 | ||
| CDD | 78 | 211 | 134 | 7.2471E-57 | – | |
| SUPERFAMILY | 79 | 208 | 130 | 1.11E-20 | – | |
| Pfam | 83 | 201 | 119 | 2.4E-17 | – | |
| Coils | 274 | 294 | 21 | - | – | |
| MobiDBLite | 291 | 338 | 48 | - | – | |
| MobiDBLite | 291 | 312 | 22 | - | – | |
| MobiDBLite | 322 | 337 | 16 | - | – | |
| SUPERFAMILY | 404 | 783 | 380 | 1.02E-121 | ||
| Pfam | 409 | 761 | 353 | 1.1E-125 | ||
| Gene3D | 494 | 662 | 169 | 1.4E-25 | – | |
| Coils | 714 | 734 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0254300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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