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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001849
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 108 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.348s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0046969.1
n.a. Pleckstrin (PH) domain-containing protein isoform 3, partial [Theobroma cacao] gi|508777778|gb|EOY25034.1| chr0 15669076 15672323 -
3 domain predictions
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Lj0g3v0130899.1
n.a. Oxysterol-binding protein-related protein [Medicago truncatula] gi|357463185|ref|XP_003601874.1| chr0 59455762 59459004 -
3 domain predictions
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Lj0g3v0201789.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max] gi|356511534|ref|XP_003524480.1| chr0 99843316 99852202 +
2 domain predictions
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Lj0g3v0201789.2
n.a. ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|357520601|ref|XP_003630589.1| chr0 99843316 99847748 +
2 domain predictions
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Lj0g3v0235939.1
n.a. PREDICTED: oxysterol-binding protein-related protein 1C-like isoform 2 [Glycine max] gi|356552837|ref|XP_003544769.1| chr0 122281045 122282554 +
3 domain predictions
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Lj0g3v0273669.1
n.a. PREDICTED: pleckstrin homology domain-containing protein 1-like [Cicer arietinum] gi|502129267|ref|XP_004500244.1| chr0 141858601 141859568 +
4 domain predictions
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Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
2 domain predictions
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Lj0g3v0292439.1
n.a. oxysterol-binding protein [Glycine max] gi|351725709|ref|NP_001236590.1| chr0 151784710 151793991 -
2 domain predictions
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Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
2 domain predictions
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
2 domain predictions
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Lj1g3v1380900.3
n.a. PREDICTED: oxysterol-binding protein-related protein 1C-like [Cicer arietinum] gi|502137210|ref|XP_004503009.1| chr1 16684564 16692111 -
3 domain predictions
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Lj1g3v1442930.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD1-like [Cicer arietinum] gi|502133396|ref|XP_004501749.1| chr1 17388737 17391036 +
4 domain predictions
 –
Lj1g3v1442930.2
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD1-like [Cicer arietinum] gi|502133396|ref|XP_004501749.1| chr1 17388737 17392679 +
4 domain predictions
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Lj1g3v3137870.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max] gi|356523716|ref|XP_003530481.1| chr1 35745154 35754140 +
4 domain predictions
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Lj2g3v1988700.2
n.a. Pleckstrin (PH) domain-containing protein isoform 2 [Theobroma cacao] gi|508776870|gb|EOY24126.1| chr2 29485873 29533570 -
4 domain predictions
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Lj2g3v2736560.1
n.a. PREDICTED: pleckstrin homology domain-containing protein 1-like [Cicer arietinum] gi|502097376|ref|XP_004490979.1| chr2 36322884 36323852 -
4 domain predictions
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Lj2g3v2736570.1
n.a. PREDICTED: pleckstrin homology domain-containing protein 1-like [Cicer arietinum] gi|502097376|ref|XP_004490979.1| chr2 36323077 36323852 -
4 domain predictions
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Lj2g3v3022930.1
n.a. PREDICTED: platelet binding protein GspB-like isoform X1 [Cicer arietinum] gi|502098400|ref|XP_004491226.1| chr2 39102194 39115034 +
4 domain predictions
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Lj2g3v3022930.2
n.a. PREDICTED: platelet binding protein GspB-like isoform X2 [Cicer arietinum] gi|502098404|ref|XP_004491227.1| chr2 39102194 39113823 +
4 domain predictions
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Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
2 domain predictions
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Lj2g3v3084310.1
n.a. PREDICTED: differentially expressed in FDCP 6 homolog [Cicer arietinum] gi|502098779|ref|XP_004491315.1| chr2 39645803 39651835 -
3 domain predictions
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Lj3g3v0462040.1
n.a. dynamin homolog [Astragalus sinicus] gi|6625788|gb|AAF19398.1|AF203882_1 chr3 5059703 5071377 -
4 domain predictions
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Lj3g3v0462310.1
n.a. dynamin homolog [Astragalus sinicus] gi|6625788|gb|AAF19398.1|AF203882_1 chr3 5186739 5195972 -
4 domain predictions
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Lj3g3v1086330.1
n.a. Pleckstrin (PH) and lipid-binding START domains-containing protein isoform 1 [Theobroma cacao] gi|508787129|gb|EOY34385.1| chr3 14559445 14567068 -
4 domain predictions
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Lj3g3v3500220.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD2-like [Glycine max] gi|356544659|ref|XP_003540765.1| chr3 42585629 42595505 -
4 domain predictions
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Lj4g3v0000080.1
n.a. PREDICTED: dynamin-2B-like [Glycine max] gi|356563206|ref|XP_003549855.1| chr4 61734 98073 +
4 domain predictions
 –
Lj4g3v3003930.1
n.a. Pleckstrin (PH) domain-containing protein isoform 1 [Theobroma cacao] gi|508777776|gb|EOY25032.1| chr4 39843642 39850717 -
3 domain predictions
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Lj5g3v0444870.1
n.a. PREDICTED: oxysterol-binding protein-related protein 1C-like isoform 1 [Glycine max] gi|356552835|ref|XP_003544768.1| chr5 4391941 4399091 +
3 domain predictions
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Lj5g3v0444870.3
n.a. PREDICTED: oxysterol-binding protein-related protein 1C-like isoform 1 [Glycine max] gi|356552835|ref|XP_003544768.1| chr5 4391941 4397743 +
3 domain predictions
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Lj5g3v1500430.1
n.a. PREDICTED: phospholipase D p1-like, partial [Cicer arietinum] gi|502117952|ref|XP_004496027.1| chr5 21963524 21975239 +
3 domain predictions
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Lj5g3v1811660.1
n.a. Pleckstrin (PH) and lipid-binding START domains-containing protein [Theobroma cacao] gi|508726768|gb|EOY18665.1| chr5 25946483 25954658 +
4 domain predictions
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Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
2 domain predictions
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Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
3 domain predictions
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Lj6g3v0391170.1
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357460713|ref|XP_003600638.1| chr6 3588296 3593342 +
2 domain predictions
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Lj6g3v0948300.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gi|508785674|gb|EOY32930.1| chr6 10706009 10713387 -
2 domain predictions
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Lj6g3v1491480.1
n.a. PREDICTED: phospholipase D p1-like [Glycine max] gi|356556110|ref|XP_003546370.1| chr6 17337626 17345778 +
2 domain predictions
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Lj6g3v1602960.1
n.a. Kinase-START [Medicago truncatula] gi|357484695|ref|XP_003612635.1| chr6 18053161 18065008 +
3 domain predictions
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LotjaGi1g1v0044400.1
n.a. Pleckstrin-like (PH) domain protein; TAIR: AT2G30880.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|Q7SYB5|DEFI6_DANRE Differentially expressed in FDCP 6 homolog; TrEMBL-Plants: tr|I1JJ22|I1JJ22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0044400 LjG1.1_chr1 6036794 6047528 +
3 domain predictions
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LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
2 domain predictions
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LotjaGi1g1v0049200.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7K368|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833926 -
2 domain predictions
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LotjaGi1g1v0050600.1
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7221625 7235220 -
4 domain predictions
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LotjaGi1g1v0078500.1
n.a. Pleckstrin homology domain-containing protein 1; TAIR: AT5G05710.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9ST43|PH1_ARATH Pleckstrin homology domain-containing protein 1; TrEMBL-Plants: tr|T2DN45|T2DN45_PHAVU Pleckstrin homology domain-containing protein; Found in the gene: LotjaGi1g1v0078500 LjG1.1_chr1 11323656 11324098 +
4 domain predictions
 –
LotjaGi1g1v0180400.1
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|K7M7F8|K7M7F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180400 LjG1.1_chr1 35000212 35008342 +
3 domain predictions
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LotjaGi1g1v0180400.2
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|K7M7F8|K7M7F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180400 LjG1.1_chr1 35000505 35007135 +
3 domain predictions
 –
LotjaGi1g1v0180400.3
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|K7M7F8|K7M7F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180400 LjG1.1_chr1 35000505 35007135 +
2 domain predictions
 –
LotjaGi1g1v0180400.4
n.a. Oxysterol-binding protein; TAIR: AT4G08180.2 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|K7M7F8|K7M7F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180400 LjG1.1_chr1 35000505 35007135 +
2 domain predictions
 –
LotjaGi1g1v0180400.5
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|K7M7F8|K7M7F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180400 LjG1.1_chr1 35000505 35007135 +
3 domain predictions
 –
LotjaGi1g1v0180400.6
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|K7M7F8|K7M7F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180400 LjG1.1_chr1 35000505 35007183 +
3 domain predictions
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LotjaGi1g1v0254300.1
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|A9ZM29|A9ZM29_SOYBN Oxysterol-binding protein; Found in the gene: LotjaGi1g1v0254300 LjG1.1_chr1 61225194 61231988 +
3 domain predictions
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LotjaGi1g1v0254300.2
n.a. Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|A9ZM29|A9ZM29_SOYBN Oxysterol-binding protein; Found in the gene: LotjaGi1g1v0254300 LjG1.1_chr1 61225415 61231136 +
3 domain predictions
 –