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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0255800 |
| Transcript ID | LotjaGi1g1v0255800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G31830.1 transmembrane protein; Swiss-Prot: sp|Q02485|CAC1S_RAT Voltage-dependent L-type calcium channel subunit alpha-1S; TrEMBL-Plants: tr|A0A1J7H9F5|A0A1J7H9F5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0255800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:61696514..61697458) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCCACGTTCCGGCTACAACAACGCGTAGCAACTACGTGTTGGAAACATACAAGGCATGGTGAGACGTGGCTAAACAA CAACATGAACTATAGTTTCATCATTTTCTTTCTTTCTGCATGCATGTTTTGAGGCAATTGAAGTGGTGTAAGCAACTATT AAGTTATAAAAAACCAGTCTCTTTAAGGCTCCATTATCATCATCATGGGTGGTGGAGACGAAGATCAGTGGAGAAAAATG GCAGACACACACAAATTGAGTCCAGAGCAAGTGAAAGCAGCAGGGGTAGAAGCGTCAAAGAGACCTCCAGGTCATGGTCC TGGTCCTGCTGGTGGAACCCTTCACCAGACAAAATCACTTCCTTTCAGCTTCACAACCATGGCTCTAGCAGGTTTGCTTA TTACAGGTGCTGTGGGATATGGTGTCTTGTATGCAAAGAAGAAGCCTGAGGCCAGTGCTATGGATGTAGCAAAAGTAGAA GTGGGAGTTGCAAAGCCAGAGGAGACTCGCCCTAGGAAATAGCTATCAATATGCCTGCCATATATATGAGTTCTTGTGAA TTTTTTAGTTCAGGGCCGGGGTTGGTTTCTTTAATTTTTTCATTTTAAAAATTTCACTTTTTGTGTTTTAAGGGGAGTTG TTGAACGGTGGGGGGCTGAAGGTTTTTACCAGTAATCCAATTTCACCACACTGGATATGAACTAATGACTTGTTCTTCTT CATTCGTACATGCTAATATTATAAAGCCAGCTAGTGCCTAGTTTGGCATTTTGATATTTTTAAATGCAGTTTCTTGCTTA GTGGCTTTTAGGATAAATTGTATTTATTTATTTATTTATACTCTTACATTAATTGTGTTTATTCTAGTTAGGTTGAATGG AAAATGTGACGACAAGAACTGCAATTTTACAAGGATGTTAAACTGAAAATATTTTTCAAGGATGA
CDS sequence (LotjaGi1g1v0255800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTGGAGACGAAGATCAGTGGAGAAAAATGGCAGACACACACAAATTGAGTCCAGAGCAAGTGAAAGCAGCAGG GGTAGAAGCGTCAAAGAGACCTCCAGGTCATGGTCCTGGTCCTGCTGGTGGAACCCTTCACCAGACAAAATCACTTCCTT TCAGCTTCACAACCATGGCTCTAGCAGGTTTGCTTATTACAGGTGCTGTGGGATATGGTGTCTTGTATGCAAAGAAGAAG CCTGAGGCCAGTGCTATGGATGTAGCAAAAGTAGAAGTGGGAGTTGCAAAGCCAGAGGAGACTCGCCCTAGGAAATAG
Protein sequence (LotjaGi1g1v0255800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGDEDQWRKMADTHKLSPEQVKAAGVEASKRPPGHGPGPAGGTLHQTKSLPFSFTTMALAGLLITGAVGYGVLYAKKK PEASAMDVAKVEVGVAKPEETRPRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 48 | 48 | - | – | |
| Phobius | 1 | 53 | 53 | - | – | |
| PANTHER | 4 | 103 | 100 | 1.1E-48 | – | |
| PANTHER | 4 | 103 | 100 | 1.1E-48 | – | |
| Phobius | 54 | 77 | 24 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 78 | 105 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0255800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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