Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0260100 |
Transcript ID | LotjaGi1g1v0260100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT3G52680.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0260100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:63004033..63009263) extracted from Lotus japonicus Gifu genome v1.2.
TATGGATTATTTGTAGAATGGACCAGGAGGCTGGCCCAAGTGGTGATACCTAAACTAAAATGAAACCCTAATCAATAGAA AGAGTTTCCTTCCTTCACCGAGAAAAAACGGCGCGGCGCTACACTCACAGCTGGGCAGCCATGTTGATCTCCTTTTGTAG ATCTGATATGCGGCGATTTAGACATCGGATCGATGAACGACGCATGTGAGTTCTGTTTCTCTGATCAACAAGCGCATTAA CTGACTCCATATCAAAATAATGGACGATGATACGATTAGCAGCTTACCGGACGCGATCCTGTGCCGCATACTCTCTTTTC TCCCAACCAAACAAGCCGTTGCAACCAGCGTTCTCTCCAAGCGGTGGATCCCACTATGGCGTTCAGTCTCTACTCTCGAC TTTGATGACACCTGCTACGTCAGCATCGACGACTTTACTGGCGACTACTTCCACACAAGCAGAGCCTCTTATTCTCGCTT TCTTCAGTGCGTGTATGCTGCCCTGCTCTATCGAGATCTCCGGCAACCCATCCATACATTCCGCCTTCACTGCGCTTCTT TTGATTATTACGATCCTACCAATGTAACCATATGGGTTAATGCTGCAGTCCAGCGCAGAGTTCAGCATCTCGATATCTCC TTAGGCTTTCGTCCGTGTGATATTAACAGACGACCCACCAACTTGTCTTCCATCTTCACTTGCACCACTCTTGTGGTTCT CAAGTTGCGCCAGATGGATTTCATTCCGTTTTCGTCGGATGTTCATTTGCCCTCACTCAAAGTCCTGCATCTACAAGATT TGATTTTCTTAGAACGCGAATCTCTCGCAAAGCTTCTTTCTGGATCTCCAAATCTCCAGGATTTCAAGGCAAGGGGATTG CGTTTTGATAATTATAACACTGATAGAGAGTTTAAAACCTTACCCAAGTTGCTCAGAGCAGATATTTCAGCCACTCAGAC TTGTTTTTTGTTCACAGAAGTCGTTAACAATGTCCAGTTTTTGCACTTAGACAAGGTAGGTAGTAACGTATCCATCATTC TTTTTCACTCTATTTCAAAATGTGGATTTTTTATTTCTTTAAATTGTAACTAATGCAGATTCCTTCTAGACTCTTACTCG AGCCTCAATGGATTGACTTGGACTACAGCTACATTTTCCCCATGTTTCACAATTTAACACATGTTGAGCTTGTCTATCAA CCCTATAATTCTGATTGGTCTCAGGTAGTGGAATTCCTCCATCATTGCCCTAAGCTTCAAGTTCTCCTCATAAACCAGGT TTGCTTTATTAGAGGATTAGCTAGGAGAATGATTTTTTTGTCAGGTGTTTTCCTTTATTTATTTTGTCTTGTTTAATGTT CACAGCCAAATTTTCATAGCTTTGACTCTGAGCAAATTGGAAAAATAGGAGATTGGCAATTCCCATCAACCATTCCTGAA TGCATTCTATTACACCTTAGAAGATGCTATCTAAATGATTATAGAGGCACCAAACCGGAGTTTCAATTTGCAAAATATAT TATGCAGAAAGCAAGATTTTTAAAGAGCATGGCCATATCCACTGGCATTGCCAAAAATCTAAAGTCTAAGATGTTGAAAG AATTATCCTCATGCAAGAGGCACTCCGCAACTTGTAGACTTTCCTTTAAATGATAGGAAACAAGATTTGGTAGCTGCAAG TATTCAAGAGGCACTCTGCAACTTTTAGACTTTCCTTTCATTTCTGATGAATAATTGCAAATTTAAGATATAGTGCTCTA GTGTAAGGCAATTGTATGTTAAATTCTTATCTTATGTTAACCTCCATGATACGAAAGTGTAAACCCTCTCTCAGACAGGT GCTGTCACTCACATAATCAAACATTTAGTTGTTTGTTAAAAATTAACTCTCTTTTCTCTTTTGACATAATTAATTTTTGG TATTATTTTGAATCAATTTTGATGAATTTGGTCAGAATTAAATTTTTAGATAAGATGATTCTATCTTTTCAATAAGAAAG GGTTATGACTTGTACCCCTGGAGTAAGTCCAATTCTCCATTCCCCCTAGACACATTAAAAGTAATGTGATAAACCCTCTA TTCAGACCACAAGTACTATCTATTCCTTTCAATGTATTTTGCCTTTTCTTTTTCTTATCCTAAATATTGCATCTTTTATT TGAGTCACACCCTCTCTTTTTCACACGTATTCCAAGTGTAACATTGTTGCAGATATTTTCCTTGCACTCTCCAAATGAAC TTCGTGCTTATTCTCCTCCGTGTCTATCTCTATTCTTCAATTCACACACCTCCATCTTCAAGCTCCTATGATTATTACAG AGGGTTTAGCAATCTTTGAAGTTGTGGGGAGTGGGGACATAAGAACATTGGTTTTCCTTTCTGGGGATAAAATCACCCAA ATGGTGTGACCACTCTCTGCTGCAATTCACTTGCCAAGGGAAGTGATGTCAGGCACAAGGTTTTGGAGGCAAACCCAATG AACAGACTGAGACTTACACGAGTTGCCTACTTGTAAGGACTGTGCCCATCAAGATCTGTTAACACCACCCTTGACACTAC TGAGCTCTTTGTTTATGGATTTGAGTATAAGAATATGTCTATGCTCAGTTTGAGTCTATTGGGAATCGTTTGTTTTGCAA ACAAAGTGTTGTTGTTCCTGTTCCTGGGGTATTCTTTGATATTATTGATATCAACAAAACAATACAGGCAATCAGAGATG GTCTTTGGTGAATTGGATAGCCGAAGTTCAAGAATGTGAGGAGTGTAGAAAATCAGGTGGAGTGTGTGGTTATGACTCAA ATAAACCCCAAATTATTATTGCAGAGATCAACCTTGTCCTAATTTCATACCTAATGCCAAAGAGCTTCCACCTTCAGGTT TGTTTTCTAAATTGAGAACTTATGATCAATCCCAACTGCATTTTTTGTTCTATGTGAAGGCCAAATGACCATCTAATTAA TATGATCACTTAATTTAGTTTGTCGACATTGTAATTTACTTAGTCCTTGTTCATAAATAAGAGCATTTAGTTTCCTTATG TCTTTGCTTGTTCATCTGGACCGACCAAACTGCTTGTTTTGTTGATTGAGCTTAACTATATTCCCAACACAAAAGTTATC TACTAGATGGCTAATTCAAAGTATATCTTAATATTATCACTTTGGCTTTAACATTTTTTTATTTGACGGGTGTATATCCG TTTAGGAAATTGTGTCTTGTCTCTCCTAATATGAGTTTTTTTTTGTGTTTGAACTTGTGTCATCACTCTTATTCCTCCTT CTTTTGTGCGATCTGGAATCCCTTCTCAACCAGGAAATTTCTCTTGAATTGACGACCTTCTTTTTTCCCATGACCGGTCT TATCTTTAATCCGTGAATGTTGAGGAGATTGCAGATGTGACTGGCACAGAGAATTTGAAATCCTTTTGGTCAAAAGAATT TGAAATCCTTGACTATCAGACTTAAAAGAGACTTTGTGTTTTTGTAAGGCCCAACAAGCCCAATACAACCCAACAATCGT TCTTATCCTTCCAATATTATTGGACTTCGGGTTTTTCTGCCGACTTTAAGATTTAGGGTCAATTTTAGGGTTGGGCTGAT TTTAAGATGAAGTGCGTCTTTATCTCGACAGCCGCATGTACTCCTTGTTTGTCCCGAGAGATCTTAATTAGGTTAAGAAA GAGGTTGCGAAAATTTCATCCATTTTCACCACCACGTCTTCAATCTCATGAGACTTAGGTCTGATCTTACTTTCTCTCAT GATGCCTATGATGACCAAATGATCATCAAACCTTGCCGCCCGCGAGGATGAACTTGTTTATCTCCACTGATCCTAGTGGT TTGTAGCTTGAGTTTCCTTACACGTATAACCTTCTTGAAGGCACTTGAGATTAGAATATGCCTTTTTCAACTTATGAATG TTCTCTTCTACAAGTGCTCAATGTTTTCCCGACTCAGCTTCACCCCAATAGTTTGTCCTTCATTAGATCCTTCATCCTTC TTTATGATGCCTTTAATATTACTCCCAGATTGAGTTTGTTTAGGGATCAAATCAAGGTCGGTTGGGTTTTATAAATAGAA TCCCTAGGATAACGTCTCTACTTTATACTTAAAATCCTATAAATGTTTTAAGAGTATGTCTCTGCTAGGACAACGTCGAG TGAGAGGTAGTGAAAACTTTCCATACCTATTAGTTGATGTTGATGGGAGTCCTAAGTTTCTTTTGTACTAGACAACCTAT TCAACGTTTATTCAGTGGGTAAAGTTAATCTTGAATTTCTGACTAATGAAGATGTAGTTTGACGTAGAATTTCTTGAAAG TATTCCCTTATTAAATAGTAAAGAACAATCGAGAGCTAAGTGAGTATGAAACTTAGAATAAGGTCTATGGTCAAATCATA TGATTATTAGAGTTGTGGATTTATTTTGCAATTAAAAGAATTTATGTACCTCTCATGAGGAGAAATTTGATTTCTTTGTC TAAAGATTCATGATTATGGTTTTCTTTTAGTTTCAATAAATAGATAAATAGATAAATCATTCGTGAAGGGAATGTTGTTT CTGATTACTTGACCAAGTTTGGAACCTATACTGCGAGTACTATTTTATTTTGGGATACACTTATGGCGGTGTTTCCTCTT TGTTGCTGGTGAATGCTCTTGGAGTGGCATTCTTGAGGCGTTAGTTTCTTTTGCTGTTTTTTCTTTCTTTTTGCTCTTGG TATAAAAAAATAGATAAAAAGATTTTGTGATTTGTCATGTAATCATCAAGTTATTGAGAAAGTAGTCAAAATGTGATGGC GAGGGGGAGGACTTCCTCGACGACAATGACCACCGGCCAAGCGTCTCAAGCTCCGATGCGTAATCGGGTTTGACGACCCG CTTAGGAACTGTCTTCCTGCTCCGCAATGGCATCAGAAACGGCGAGAAGAAACAACTCGATGACACAATCTTGGATCGGG CAAGAAGGGGCCGCTTAACTGACCCTTCGGGGTTGACCGGAAGGATCGGGTCCGGGGCTCAACCGGAGATAATAGGTACG ATCCGGCTGGCGGCGGTGGCTTGAGCTTAACTGACGGCGATTCCGGTACTTGTCGCACGATTTTCGACTTCCTTTTATTC AACCAGCACTACTGTATTGTGACAGCCAGCAACCAGCAGTCTTCAAAGGGGAAGTTTTTTATAAGGGGCGAGTTTTTATG GGATACAACATAAATCCTGGCTTTGGCTCAC
CDS sequence (LotjaGi1g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATGATACGATTAGCAGCTTACCGGACGCGATCCTGTGCCGCATACTCTCTTTTCTCCCAACCAAACAAGCCGT TGCAACCAGCGTTCTCTCCAAGCGGTGGATCCCACTATGGCGTTCAGTCTCTACTCTCGACTTTGATGACACCTGCTACG TCAGCATCGACGACTTTACTGGCGACTACTTCCACACAAGCAGAGCCTCTTATTCTCGCTTTCTTCAGTGCGTGTATGCT GCCCTGCTCTATCGAGATCTCCGGCAACCCATCCATACATTCCGCCTTCACTGCGCTTCTTTTGATTATTACGATCCTAC CAATGTAACCATATGGGTTAATGCTGCAGTCCAGCGCAGAGTTCAGCATCTCGATATCTCCTTAGGCTTTCGTCCGTGTG ATATTAACAGACGACCCACCAACTTGTCTTCCATCTTCACTTGCACCACTCTTGTGGTTCTCAAGTTGCGCCAGATGGAT TTCATTCCGTTTTCGTCGGATGTTCATTTGCCCTCACTCAAAGTCCTGCATCTACAAGATTTGATTTTCTTAGAACGCGA ATCTCTCGCAAAGCTTCTTTCTGGATCTCCAAATCTCCAGGATTTCAAGGCAAGGGGATTGCGTTTTGATAATTATAACA CTGATAGAGAGTTTAAAACCTTACCCAAGTTGCTCAGAGCAGATATTTCAGCCACTCAGACTTGTTTTTTGTTCACAGAA GTCGTTAACAATGTCCAGTTTTTGCACTTAGACAAGATTCCTTCTAGACTCTTACTCGAGCCTCAATGGATTGACTTGGA CTACAGCTACATTTTCCCCATGTTTCACAATTTAACACATGTTGAGCTTGTCTATCAACCCTATAATTCTGATTGGTCTC AGGTAGTGGAATTCCTCCATCATTGCCCTAAGCTTCAAGTTCTCCTCATAAACCAGCCAAATTTTCATAGCTTTGACTCT GAGCAAATTGGAAAAATAGGAGATTGGCAATTCCCATCAACCATTCCTGAATGCATTCTATTACACCTTAGAAGATGCTA TCTAAATGATTATAGAGGCACCAAACCGGAGTTTCAATTTGCAAAATATATTATGCAGAAAGCAAGATTTTTAAAGAGCA TGGCCATATCCACTGGCATTGCCAAAAATCTAAAGTCTAAGATGTTGAAAGAATTATCCTCATGCAAGAGGCACTCCGCA ACTTGTAGACTTTCCTTTAAATGA
Protein sequence (LotjaGi1g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDTISSLPDAILCRILSFLPTKQAVATSVLSKRWIPLWRSVSTLDFDDTCYVSIDDFTGDYFHTSRASYSRFLQCVYA ALLYRDLRQPIHTFRLHCASFDYYDPTNVTIWVNAAVQRRVQHLDISLGFRPCDINRRPTNLSSIFTCTTLVVLKLRQMD FIPFSSDVHLPSLKVLHLQDLIFLERESLAKLLSGSPNLQDFKARGLRFDNYNTDREFKTLPKLLRADISATQTCFLFTE VVNNVQFLHLDKIPSRLLLEPQWIDLDYSYIFPMFHNLTHVELVYQPYNSDWSQVVEFLHHCPKLQVLLINQPNFHSFDS EQIGKIGDWQFPSTIPECILLHLRRCYLNDYRGTKPEFQFAKYIMQKARFLKSMAISTGIAKNLKSKMLKELSSCKRHSA TCRLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 404 | 402 | 8.5E-76 | – | |
PANTHER | 3 | 404 | 402 | 8.5E-76 | – | |
ProSiteProfiles | 3 | 56 | 54 | 9.391 | ||
SUPERFAMILY | 3 | 78 | 76 | 4.84E-13 | ||
Pfam | 5 | 36 | 32 | 7.2E-7 | ||
SUPERFAMILY | 120 | 348 | 229 | 3.14E-10 | – | |
Pfam | 172 | 197 | 26 | 3.3E-4 | ||
Pfam | 332 | 376 | 45 | 4.7E-11 | ||
SMART | 337 | 407 | 71 | 6.5E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0260100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…