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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0261100 |
| Transcript ID | LotjaGi1g1v0261100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT1G01720.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q39013|NAC2_ARATH NAC domain-containing protein 2; TrEMBL-Plants: tr|C7AFG2|C7AFG2_CICAR NAC family transcription factor 5; Found in the gene: LotjaGi1g1v0261100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:63933817..63936090) extracted from Lotus japonicus Gifu genome v1.2.
AACATAATACTAGAATAAATTAATTAACCTACTCTATGGCCCATTTACGAGGCCCACCCCACTCACGCTTATCAGCACAG TACTACTACCGAAACGTTACCCTTCACGTTTATTCTAGAACACGATGGCTTCTCCGCCACGTGTAACAAATGGTGCCTAT AAATACGAGTCTCACCCTCACGTATTAAGTTTCAAGCGCCGCCACCGTTGTTCTTCTTAGTCTTCTTCAATCTTCATCAG AGAGAGCCACCAAACCAATCTCAGTTGAAAAATGGCATCAGAGCTTCAATTGCCACCGGGTTTCCGATTCCATCCAACGG ATGAGGAGCTCGTGCTGCACTATCTCTGCCGCAAATGCGCGTCGCAGCCGATCGCTGTTCCGATCATCGCTGAAATCGAT CTCTACAAATACGATCCTTGGGACCTTCCTGGTAATCAAATAATCAATCTTCTTTCTCTGAATCTCTGTTCACTTTTACA AAAATGAAGATGTGATTCATTATTTTTTATCATTTAAACAATGTTTGCTCTAATTTGACTTTCATTTCTTTTATTATTTG TTTATTATTTTATAGGTTTGGCTTCGTACGGAGAGAAAGAGTGGTACTTCTTTTCACCTCGGGACCGGAAATATCCAAAC GGTTCAAGGCCGAACCGGGCTGCGGGAACCGGGTACTGGAAGGCAACCGGGGCGGATAAGCCCATTGGTCACCCTAAACC GGTTGGGATCAAGAAAGCCTTAGTGTTTTATGCTGGGAAAGCACCCAAAGGTGACAAAACCAATTGGATCATGCATGAGT ATCGTCTTGCCGACGTAGATCGCTCCATTCGCAAAAAGAACAGTCTAAGGGTAATTTTTTAATTCATGATTAGATCTAAT AATTATATTTTAATATTATAGTTTTAAATAAAAGAGTATGTTTTATAAAATACATTTTATTTATATGTATTGGTGGTCCT ATTGATCTAGGTTTGTGGCCACTCATTTTTCTATTGTGTGAAATTTCCCATGGCCAAAAAAATGATCATATGATGTAACA ACTCATTACTAGTTGAACCCTTTTGGCTCAAGCGTTATCAAAACAATAATTGGTGTGAAAAAAATATCTTCCTGATTTCC ACTTTCCATTTATGGAACGATTCCTACTTATCTATGTGACATGCATTTGTATTCAATTATTAGGAATGATTAATATTTTT TTTTCTATTGAAAAAAAAGAGATTAATTGAACGGTTCTGATTTTGCAGCTGGATGACTGGGTGCTGTGCCGCATTTACAA CAAGAAGGGCTCGATCGAGAGACAACCAAGCGGCGCCGTTTACAGCGTCAAGACGGAGTCATCGGAACTGGAAAAGCGGA AGCCGGAGATTCTGACCCGCGCTGCCGGGTGCCTTCCACCGCCGCATCCGCCGCAAGCGCCGGCGGCGGGCGTGACGGAT TACATGTATTTTGACGCGTCGGATTCGGTCCCGAAGCTGCATACTGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGA GTTCGCGACGGAGGTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAAAAGAGCCTCGAGTTTCCTTATAATTACGTGGATG CCACTCTCAGCAATAACAACAGCAACAACAACGGATTTGGGTCCCAGTTTCAGAGTGGTAATCAGCTGTCGCCGCTGCAG GATATGTTCCTGTACATGCCCAAGCCGTTCTAAGCATTGAAAATTTGAAACTCAGAACACAATCTATGCCGCAAGATGCA TCGCACGGTAGCACGAGACTGGAGGTCCATGAGTGTGCCTGTGCGAGTGTGTAGGTGATAAATTTAGATAAGGCAAAGGA GGAGAAAGAAAGAAAATGAAGATGAAAATGCACATGTTGGTCCACCGTTTAGCACCGATGGGTTTGGTTGGTGGCGGTAG GATGAGGGATCCAGCGGTGCATGTTGGATCTGTCTGTGTCTAGGATTTACATGTGTATAGCTAGCTTAGCTTAGCTACTG TAGAATGTAGATAAGGTACAAAACACTATGTCATGTCATCAGATCTAAGTCCGACTTTCTAATTAATATTTGTTGAATTG AATTAATACTAGTGTTTGTTCCATCTTATTGATCGTAGTTTTTTTTTCTTTTTAATTTTCTTTGTTTCTTTTTTCTTGTG ATCAATCACTTTGATATGAAAATTTTGATTCACCCTAGCAGAATATGATATAAATTATTTTTCTACGTTTTTTTTTTGTC ATAAAAAAAATTATAGAAATTTTAAATTCTCTCT
CDS sequence (LotjaGi1g1v0261100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAGAGCTTCAATTGCCACCGGGTTTCCGATTCCATCCAACGGATGAGGAGCTCGTGCTGCACTATCTCTGCCG CAAATGCGCGTCGCAGCCGATCGCTGTTCCGATCATCGCTGAAATCGATCTCTACAAATACGATCCTTGGGACCTTCCTG GTTTGGCTTCGTACGGAGAGAAAGAGTGGTACTTCTTTTCACCTCGGGACCGGAAATATCCAAACGGTTCAAGGCCGAAC CGGGCTGCGGGAACCGGGTACTGGAAGGCAACCGGGGCGGATAAGCCCATTGGTCACCCTAAACCGGTTGGGATCAAGAA AGCCTTAGTGTTTTATGCTGGGAAAGCACCCAAAGGTGACAAAACCAATTGGATCATGCATGAGTATCGTCTTGCCGACG TAGATCGCTCCATTCGCAAAAAGAACAGTCTAAGGCTGGATGACTGGGTGCTGTGCCGCATTTACAACAAGAAGGGCTCG ATCGAGAGACAACCAAGCGGCGCCGTTTACAGCGTCAAGACGGAGTCATCGGAACTGGAAAAGCGGAAGCCGGAGATTCT GACCCGCGCTGCCGGGTGCCTTCCACCGCCGCATCCGCCGCAAGCGCCGGCGGCGGGCGTGACGGATTACATGTATTTTG ACGCGTCGGATTCGGTCCCGAAGCTGCATACTGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCGCGACGGAG GTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAAAAGAGCCTCGAGTTTCCTTATAATTACGTGGATGCCACTCTCAGCAA TAACAACAGCAACAACAACGGATTTGGGTCCCAGTTTCAGAGTGGTAATCAGCTGTCGCCGCTGCAGGATATGTTCCTGT ACATGCCCAAGCCGTTCTAA
Protein sequence (LotjaGi1g1v0261100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASELQLPPGFRFHPTDEELVLHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPN RAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGS IERQPSGAVYSVKTESSELEKRKPEILTRAAGCLPPPHPPQAPAAGVTDYMYFDASDSVPKLHTDSSCSEQVVSPEFATE VQSEPKWNEWEKSLEFPYNYVDATLSNNNSNNNGFGSQFQSGNQLSPLQDMFLYMPKPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 299 | 298 | 9.2E-147 | – | |
| PANTHER | 2 | 299 | 298 | 9.2E-147 | – | |
| SUPERFAMILY | 4 | 157 | 154 | 1.44E-62 | ||
| ProSiteProfiles | 7 | 157 | 151 | 60.827 | ||
| Pfam | 8 | 131 | 124 | 2.7E-39 | ||
| Gene3D | 16 | 163 | 148 | 5.5E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0261100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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