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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0263000 |
Transcript ID | LotjaGi1g1v0263000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Acyl-CoA N-acyltransferases (NAT) superfamily protein; TAIR: AT1G21770.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein; Swiss-Prot: sp|Q9CAQ2|Y1754_ARATH Acetyltransferase At1g77540; TrEMBL-Plants: tr|A0A1J7GC32|A0A1J7GC32_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64439171..64441243) extracted from Lotus japonicus Gifu genome v1.2.
CTAGGGATTTAAGTTCTATTAAGATCAATCTTGGTTTTATTTTGTGTCGTCGTCTCAGTGCGTTGAATCAAGCGAAATGG CAAAAACAAGCGAAGGGAAAGAAGCAGAGGTTATTGTTCCAAAGATCGTGTGGAACGAACAACAAAAGCGTTTCGAGACA GAGGACAAAGAAGCGTACTTGGAGTATGTCCTCAGAGAGAATGGGAAGGTCATGGATTTGATCCACACCTTCGTTCCTTC TTCCAAGCGAGGTCAAGGCATGGCTTCCCATCTCTCCGTCGCTGCGTTTCGTCACGCCGCATCGCATTCCTTATCGATCA TCCCCACCTGTTCCTACATCTCTGTGAGTTCTTCTAATCCCCTCATTGTTTCGTTTCTGGGTCTGAGACCATGTTATTCT TTGCGGCATTTTTACAAACACCTTCACTGCATGACTGTAACTCTTATGTTAGGAGCATCTTAGAAGATTTATATGCATCT TTTACCTATCTGTTCAAGCTCTTAGTTAGTGACATTTACCATTTATACTACTTAGAAATCTTAGGTCAATCCACTAGGGA TTAGAGGCCTCCCATGAATTTAATGGGAATTTTTTATTTTTTTAAATAAAAAATTTAAAGGATTAGCTTACCTGAAAATT CCCCCAGAATCTTTTTAATTTTGTGGAACTAGGTTGATGTTTTGACATGAAAGTCTGTTGATATTGCACTCAAGTGATGT CTTAATACAAGATATAATGACTGTGCTTGGAAAGAATTTACTTCAATAAATGGTTTGTTTAGGTGTCAAAGTATAAGACT CCATCTGAAATAGGAACCTGATTTTGGTTATCACCTGAAGTACAAAAGTTTAGATGCTCAAATTTTCTAAGAATGTTGTC TCTGATTTTTTGTCCACCTTGACCAAGTTTACTGACAACATTTGGATACTTCTCCATCTCAATAACCATCAATTACAAAG GTTTGTAATCGTCGAATTTATTGAGACTTGAAGTTTCGAGTAAGGAATAAAAATAAATATAGAATATATAAGTGATAGGA CTCGTACACTCAATGTCTTAGGGTTTTGGGTGAAAGATGTGGTGACTTTCACTAGTTCAATGTGGTGTATAAAAAGATAT ATACATCCCCTCTCTTATGCTATAACAATGAGAGATAATCTCACACCATAACAACTGGTATTAGAACTGATGGTTACAAC CCTGATTGCCCTACAACCTTCCGTTAAGGGGGTAAGCGTGGTAATATTTGTGAGGACTCACACTTGAGAGAGAGATTTTT TAGACCTAAGTATTAGTAAGAAATAAAAAAATTTAAAAAAATCTCACATTTACTGAAAAAGAAAGTGTTAAGCAACATAT AAGTGAAAAGACTCATGCACCCAATGTCTTAGGGTTTTTCACTAGTTAAATGTGTTTATAAAAAGGTATATTTATGCTTC TTTCATGCTATAACAGTAAGGAGGGATAACCTCACACCATAACAAAATCAAGCCCCTTGAATCTTACTCATATACTACTT TACACTAGGCTTATCAAAAAAAAAATATATACTACTTTACACTAGTGTCTACAAAGTTTTGGGTAAATCCCTATTTTAAC TTCTGTTGTAAGCAACTTTTAACCTTTTGCAGTTAGTTACCTTTTTCAGTGCTTTTCTCATTGGTGAAGTTTTCTTCATG TTCAGTTTTACTTTTCCTCATGTTTCATTTTCTGTTGTTGGCAGGAAACATTTGTTCCTCGGAACCCATCTTGGAATTCT GTCTTGTACACAGAGGGTGGCAAATCTAATATGTAAAAATTACATGGTACCTACCTGTGCTTCTAATTAAACGCCTGTAT GTTTTTGCTTTAAAATCTGGCCATGTTTTGTTGAGGGGCTCTGCTGTTCAGAAGTACTTAATGATTGTACTTGTACTAAT TAATAATCTCTCCTCAAATCAATGAAATATGCTTTACTGCTGAGATGTTTGCATCTTATTACAAGGTTTTCGGAATATCC TTAAGATTAATCAAATTCAAACATGTTTATATCCTAAATGGTTCCATAGTTTGGCTTCTTATTATTATCATGG
CDS sequence (LotjaGi1g1v0263000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAAACAAGCGAAGGGAAAGAAGCAGAGGTTATTGTTCCAAAGATCGTGTGGAACGAACAACAAAAGCGTTTCGA GACAGAGGACAAAGAAGCGTACTTGGAGTATGTCCTCAGAGAGAATGGGAAGGTCATGGATTTGATCCACACCTTCGTTC CTTCTTCCAAGCGAGGTCAAGGCATGGCTTCCCATCTCTCCGTCGCTGCGTTTCGTCACGCCGCATCGCATTCCTTATCG ATCATCCCCACCTGTTCCTACATCTCTGAAACATTTGTTCCTCGGAACCCATCTTGGAATTCTGTCTTGTACACAGAGGG TGGCAAATCTAATATGTAA
Protein sequence (LotjaGi1g1v0263000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTSEGKEAEVIVPKIVWNEQQKRFETEDKEAYLEYVLRENGKVMDLIHTFVPSSKRGQGMASHLSVAAFRHAASHSLS IIPTCSYISETFVPRNPSWNSVLYTEGGKSNM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 10 | 107 | 98 | 4.1E-47 | – | |
PANTHER | 10 | 107 | 98 | 4.1E-47 | – | |
Gene3D | 11 | 112 | 102 | 1.9E-40 | – | |
SUPERFAMILY | 16 | 104 | 89 | 2.24E-25 | ||
ProSiteProfiles | 16 | 104 | 89 | 22.331 | ||
Pfam | 26 | 101 | 76 | 5.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0263000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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